TCONS_00065554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065554
Unique NameTCONS_00065554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065554 ID=TCONS_00065554|Name=TCONS_00065554|organism=Clytia hemisphaerica|type=transcript|length=691bp
aaaatgaCGAAAGATAAGATGAAAAAAGATAACGATATATAAAGTTAGGT
GAAGTAAGTTTTAAAGATAAAAGTTTGAGATAAACTGACCTTGAAATAAG
TGGGTACAGAAAATTAgagaaataagaacatttcgAAAATGAATTGTTTG
GTTTACCTAATTTGCTGGCTATTAGTTGGCAGTATATTTTGTAAATCGGA
TAAACAAGCACGAGACATTCTAAAAGAAATTGACGATTACATTGCTGCTG
AAGTGAAAGCCGAAAGCGCTGATATAGCCTCGAAGCCAAAGAAAGATTTC
CACACAGAGAAAGGCATTGAGCTAACAATCGAAGAACTAGAAAAGATGTT
GACAGAGGAAACTAAAAAGGAAACGCAAAAGAATTTTGACGAAGAAAAAA
GTAAAGATGATCTAatgaaaaaagaagatgaagaagagaaaagagatttt
aacgATGCTATCGAtatcgaaaaagaaattgaagccTTGGAAAATAAGGA
ATTCGAAGAAGCAATGGATAATTATGATTTCTTTCACGATTCTGGAAACA
TCACCAAAGCTGAAGAATCAACTATTGATGCTCTGTGGAAGAAATTTACA
AGTCAAAAGCAAGACGAATTTTTTGATATCGATGGAGaccaaaaagacaa
agaaagtttgaaaagagAATTAACCTTAGATGATAGCAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_440:246175..251846+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065554 ID=TCONS_00065554|Name=TCONS_00065554|organism=Clytia hemisphaerica|type=transcript|length=5672bp|location=Sequence derived from alignment at scaffold_440:246175..251846+ (Clytia hemisphaerica)
aaaatgaCGAAAGATAAGATGAAAAAAGATAACGATATATAAAGTTAGGT
GAAGTAAGTTTTAAAGATAAAAGTTTGAGATAAACTGACCTTGAAATAAG
TGGGTACAGAAAATTAgagaaataagaacatttcgAAAATGAATTGTTTG
GTTTACCTAATTTGCTGGCTATTAGTTGGCAGTATATTTTGTAGTAAGTA
TATTCAAAACTATTGTAACCTTATTCCTGAAGTCCATCCGCTTTAAATCT
TCTGTACTAaaataatttcatattttgtgtCTGTCACACTAAAATGGTAG
GCCAGTTGCGATTTCGTATGGTTTGTCAGAGGGTTGAtttcccggggggg
tactagggttgcgaccTGACGGGGGGttccgcccgactttcgaactttgg
acacttaccgggactaaaaaggagaaaaagaagggaaattttgggaattt
tacgacccttagcgggacaaatctgaccaattttgaccaaatttcgatct
ttcagggggtaaaaagttgaaattttcctatttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagta
cccccccccccccgggttaatTTGAATAGGAAAGAAGGATTTTGTGCAGC
GACAATTTAAACCGTCTAATTTGCACTCAATCTCAATTTTACTTCTGATT
GCTCAACCAAAGTTTCGATTCTAATAAACTATAAAataaaacccatattt
actacttgtaaGGGTTGATGCAAAAAGGCCCTTTTCGCCGCCGGACTAAT
TCGTTTTAAGTGTACAATAAATCAGCTTTCGAAATCAATGTTCAAAAAGT
ACTTGTAAACCGAAAATAacttgtttttttcaattttcatcttcattatt
tAAGATTTacgagttttttttatttgaacatTGTAATGctcggaaatatc
ttttcaacaatagaaattttgctgactcagcagaaaagggcaaaaaacgt
tgaaaaacgcttagtcagcaaaatttcaaactcaaatatctcatgatcta
gcctaggaaaccctataaatgacccctctaatcgatagtactcttcgagg
CGCATCTCGCATCTGTTAAAACTGGTATCTTtcgctgaaaattttctcaa
aaatgctgacgtcagcacaaaatattgcatttttgaagacgtatcgaCCA
ATTCCGGGTGACTAAGTCCACTAAATGAGACAAATGACCCCATTTTGGAG
Atctactcttcaagctctatctgatggcacaatcagttttagctaaatga
gaacttcaaaaatcgactttctaaggacccccaggctaaaatgaccctac
ccccttcaagcccccataaaaaattttccccagctttgtcagcttggcaa
aaactggattcggggtcccaagggaccatatgatgggaaaataaaataaa
aacccatatttactaattgtaagggtgatcctggatcgccgccggactaA
ATGGCGTTCGATAAAATCTTCGACAATTACTCAAAATCATACTGGCCGTT
TTGAAATACTGTTAGGATTctgtttcaatgtttttgttaaaAGGATATct
taatttataagaacatccaaaattttgaatcctTCGGATGATcttaactt
tctgagttttaattagcctaaaaatgttcttattttccccaatCTTGAGT
ATTTTTTCCTAAGAATTCGGGTGTTTCCAAGTCCCCAAAgtcataaaatg
ttcttaatttgttcttaacattttatccatttaagctttatgttcttata
tagtttgttcttataaaaagaaaacgtgtacctCTTGGACCTAAAATGAA
GAATGGCAGTAATGATTGACCATAATGATGTTTAATTATTATACATCCAT
GATCCTTATTTACAGAATCGGATAAACAAGCACGAGACATTCTAAAAGAA
ATTGACGATTACATTGCTGCTGAAGTGAAAGGTTTttttgaatacacctt
ttcgtccgtagccgccaattactgcgcgggcatttttttgtccattttaa
caccctaaactcgatccaatccttttttacacctattgtctataggtgca
aaacaaagactgggacggttttaggttggtaaaacggacaaaaaaatgcc
aactcggcaattggcggctacggtcgaaaaggtgtattgcatTCTTAcaa
ttttgatatttattatGAGGAAACCTGTTACGctgaattttgaatgtttt
atttCAATAGTGAATTTTATATTCTGCATCTGCAAATACGTTTCACTGCT
TAACACAAGAAATTAAGCCTTAGAAACCCGGTTTTTTACATCAAGTACAC
ATGAAATTTATTCTCAAATGTACCAATGCTCTTCAATAACCCCGGTGTGA
GGTTCTCAACCTCTTAAAGACTAGCAAACCTCGCCGTTGTATTTTACTAC
AAGCTCACTACATTCGCTGAATACAGCCAAAgactttatctgatattccg
atggcggattggcggccacccatgctaaagctctaaagaagtGGACcgat
ttcccatcggagagtgATATTCGGAAGGAAACGTCGCGAAGCATACTGAT
GCGTATTCCTTTGGTCCTTAATCATGTTCAGACGCTACGGTTTCtgttac
ggatcgagagtgttcatattggttttggAACTTtcttcggagcaagaaaa
cgaagCAGTttcgttccgatgaaaatagtggagcgaagCCGCTTCGATCT
GTTTTACTTTggaacgtcttcttttttgacctttcgaattttgacgttca
cactgtTTCGGAACGATACGGAACAGTAACATTTAAACATGGTCTTTAAC
CTAGCGTTATTCTATCTTAATCTACGTTATTGTGCTTGTATATTTATTTA
GCCGAAAGCGCTGATATAGCCTCGAAGCCAAAGAAAGATTTCCACACAGA
GAAAGGTAGTTTTGAAATCGTCTACATAGAGGCCGGTCCAGCTGGTGGCA
TACATCGTTGTTTTATTTAAACGTTAATTTAGAAGTTTGCGTTACGTAAC
GGACGTTAGATATATATTGCTTGAACTTGTATGGCAGCTGAATCATGCCT
TCATTTACCTAGCATATTTTCTCAATGTTCTGATGAATTTCAATATACAC
TCATCTTCTCTAAAATACCTCAAGTCTGTCAGTCAGATTTTAGATGTCAT
TAGGGTCGAGATTAGGGTAATTTATATGTAGACGGGTTGGCCCAGCTAGG
TAAGGTGGCATGGATTTTCGAACGTTACGTCACagttttcgaaaaatcaa
tagacgatatcggcttaacgtgaaatttcagatttgacctccgagaattc
cccacaatgctttgtgcagaaaaaaattcaccttgaacttttttccgcgc
aaagcattgtgggcaattctcggaggtcaaatctgagttttcacgctaag
ccgatatcgtctattggctAAAAATAGAGCAAGTGAGGTTCGAAAATCCA
TGCCACCTTACCTAGACGGGCCAGCCCGCCTCCATATGAACAGCCCCTTA
GAGTTAAAATCATTAAAtgaaaacggctaaaaaacttCTATCTTTATCTT
AGGCATTGAGCTAACAATCGAAGAACTAGAAAAGATGTTGACAGAGGAAA
CTAAAAAGGAAACGCAAAAGAATTTTGACGAAGAAAAAAGTAAAGATGAT
CTAatgaaaaaagaagatgaagaagagaaaagagattttaacgATGCTAT
CGAtatcgaaaaagaaattgaagccTTGGAAAATAAGGAATTCGGTTAGT
AGCAAATTGTTTTGGGTCGATAAACATAACCTGGTTTATGCTGCTTGTTG
TGATAACTCAAACTTGAAAACCTTTCGTGGATATACTAATAGAAATTAAA
ATGACATATCAATCTTTAGGGTCAAATTTGCCATAATAGAAGTGTCAATG
CATATAGTTACCTCAACAAAAAGGTTACTGTTGCGTCAGACTAATATAGC
TTCCAAGTGAAGCAAGTAAATAACTCAACAACCGCAATCGGAGAAGACCT
AGTCTGAATCGCAGACCTCTACAAAACCCCAGGTAGtataggtctgctta
atgatctaccaaccgctttccggttcgcaaagaaaatcttggcgagttaa
taatttgattgacattgatgtgcgcgcaaaaacgatcgtttcgaacgtaT
TTTTGTTAAAACACTTCGAAATTTTAAGGGTCTCTCAAGAATTCATATTT
ATATCTTTGTGCGAAATTTCAGGCAAATTTGATTAGTTGATCGAGAAATA
GGCTTAAAAAGAGTAACAGGATGTCTACAAGCAAACCTATAAATGCTAAG
AACGTTGCAAAGACTTTGTTTTAGACGTTGTTTGTCAATGTTAGCAGTTG
Aatactaccgtgaaaagcacaggtagaaatcatatatcgacgctgtgccg
accaattcagattctattcagcgcgcaatcaacgcagagaaaagtaacca
tgacgacctcCAAGATCTTGAATGAAgctcaaagttgatatttttgttcc
cgTCGTCGTTGAAAACTCATCAATGCTTTtgaaaaagagtcagtgataga
gaatcataacataaagttcgtctattatttcgattcaattaaagtgacat
ttccataattaagagtttagtaattactgttatacatttggggatcatgt
aaaagatttcttttgaaagaaacccATTCCAATTAcatttggaggtttct
gggggagttcgtaaatagtaaactgcatactgatacagtctgacATTAAT
GTGGTAATATTTGcttttcatctttgattttttctacagtgattagattg
acacatgcgcgataaaatttctattattggtcttcagaggttgaaatatt
ctcaacctctgatactcagggtagttgaatacaccttttctttttcaaaa
ctcgttttctttttctttttcaaaactcgttttctttttctttatagaAG
AAGCAATGGATAATTATGATTTCTTTCACGATTCTGGAAACATCACCAAA
GCTGAAGAATCAACTATTAATGCTTNACTCAGGGTagttgaatacacctt
ttctttttcatgatAGAAGAAGCAATGGATAATTATGATTTCTTTCACGA
TTCTGGAAACATCACCAAAGCTGAAGAATCAACTATTGATGCTCTGTGGA
AGAAATTTACAAGTCAAAAGCAAGACGAATTTTTTGATATCGATGGAGac
caaaaagacaaagaaagtttgaaaagaggtttgaaaatttcatttcaaga
tgatttcttttttttttttgaatattttctaaaCAGTTTTGAATCgcatt
tctcatagtttttatTCTTTAGATAAAAGCCTGGTTCAGTGACAAGAAAA
TAGATTTCGAAAACTTCTATCTAATTTTCTTATCTCCTTGCATTTCAGAA
TTAACCTTAGATGATAGCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041084XLOC_041084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065554-exon-scaffold_440-1491911889:246175..246367TCONS_00065554-exon-scaffold_440-1491911889:246175..246367Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1510915933:246175..246367TCONS_00065554-exon-scaffold_440-1510915933:246175..246367Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1575043694:246175..246367TCONS_00065554-exon-scaffold_440-1575043694:246175..246367Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1491911889:248290..248355TCONS_00065554-exon-scaffold_440-1491911889:248290..248355Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1510915933:248290..248355TCONS_00065554-exon-scaffold_440-1510915933:248290..248355Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1575043694:248290..248355TCONS_00065554-exon-scaffold_440-1575043694:248290..248355Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1491911889:249276..249329TCONS_00065554-exon-scaffold_440-1491911889:249276..249329Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1510915933:249276..249329TCONS_00065554-exon-scaffold_440-1510915933:249276..249329Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1575043694:249276..249329TCONS_00065554-exon-scaffold_440-1575043694:249276..249329Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1491911889:249977..250168TCONS_00065554-exon-scaffold_440-1491911889:249977..250168Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1510915933:249977..250168TCONS_00065554-exon-scaffold_440-1510915933:249977..250168Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1575043694:249977..250168TCONS_00065554-exon-scaffold_440-1575043694:249977..250168Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1491911889:251491..251652TCONS_00065554-exon-scaffold_440-1491911889:251491..251652Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1510915933:251491..251652TCONS_00065554-exon-scaffold_440-1510915933:251491..251652Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1575043694:251491..251652TCONS_00065554-exon-scaffold_440-1575043694:251491..251652Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1491911889:251823..251846TCONS_00065554-exon-scaffold_440-1491911889:251823..251846Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1510915933:251823..251846TCONS_00065554-exon-scaffold_440-1510915933:251823..251846Clytia hemisphaericaexon
TCONS_00065554-exon-scaffold_440-1575043694:251823..251846TCONS_00065554-exon-scaffold_440-1575043694:251823..251846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:246175..251846 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0736053	0.143553	0.0833397	0.0815348	0.0496304	0	0.0473156	0.132889	0	0	0	0.0245104	0	0	0	0	2.54174	3.02996	0	0	0.818406	0.572751	8.18625	11.8926	17.5044	30.9272	1.76623	2.42353	1.75647	1.78956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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