TCONS_00065560 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065560
Unique Name	TCONS_00065560
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2229

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_440:344757..350687+

transcript sequence

>TCONS_00065560 ID=TCONS_00065560|Name=TCONS_00065560|organism=Clytia hemisphaerica|type=transcript|length=2229bp
agATGTTATAAAAAAGTACATGAAGTTTTAAGAAATGGTTACTGAGAAAA
ATGATTTATTTGAAACCTATGGTGCTAGTCAAAGGTACTATTATGACTTG
AAAGATGAAGAAACCAATCATATTCAACATTATAATCAAAAGGAAAAACA
CAAGGGATTTGCGAACAAAATAAAGGAGACTTTCAAGAGTGGATTTCTAC
CTCAAGGCTACCCAACAAGTGTTAGTGAGGATTATTTAGAATACCAATTA
TGGGACACAGTACAGgctttttgttcctccattacTGGAATGTTGGCAAC
ACAAGCTATCCTCAAAGGTTATGGTGTAGGAAATGAGAAAGCAACTGTGA
TGGCTGCCTCAATTACCTGGATGCTGAAAGATGGAGCTGGTATGATAGGC
AGAATCATGTTCGCTTGGTTGAAAGGAACTCAACTAGATTGTGATGCTAA
ACGGTGGAGGTTATGTGCTGATGTTCTGAATGATACAGCTATATTCCTTG
ATCTTCTGGCACCCATCTTCAAGAGTTACTTCATTTTTATTGCATGCTTA
TCAAGTATCACTAGGTCAATCGTAGGTGTGGCTGGAGGGGCGACAAGAGC
AGCTTTAACACTTCATCAAGCGAGAAGAAATAATATGGCTGATGTCTCTG
CCAAGGATGGTAGTCAGGAAACACTGGTCAACTTGATGGCTTTGATAGCA
AGTTTCATCCTAACACCAATTGTCGCCGATCGTCCAATATTAGTCTGGTT
CTTATTTATTCTCTTCACTTTCTTTCACCTGTTTGCTAATTATCGTGCTG
TCAGTTGTGTTGTCATGGAAACGCTGAATATGAATAGACTGTACATTGTC
ATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGTCAA
CAAACTAGACCCAGTGCTAAGAAGGCACTGTAATTTCAAAGACATTTGTA
TTGGTTCGAAGTTGGGAAGTATAATTAGGACGTTAGTAAAGTAGTTTTGT
TTATAACAGAGCTGTAAGCTGTTGAGCTGTAAGCCTTAGGTCTATCTTAA
TTCAGGAGCTACTGTGTAGTATTACAAGCATCAAGGTTGTAACAAGAATC
CCTTTTTTACTTTCTCTAATCAACAAAGTCAAGTATGATTTTCTATAGAA
TAATCCATTGATCCACTTTTTCGTTCTACCCGCATAGTATTGATTATTTT
TATGCTATCCTTCTTTACAATATTCCTCCAATCCTACAATTCAGGTATAA
AATCCACAATAGTGATTTagaagaaattttgaagaatgaaAGAAATCAAT
ACATTGTTTCATTTGACCAAGGGAAAGTCTATGTTGCATTGCGCCATGGA
GTTGACGATAGTATTATCTTGCAAAGTAGCATAATGGCAATCCTGTTGGA
TATTGCTTTACGTAGTAGTGATATTAATTCCCAATATCTAAATAGTATCA
GGAGCTGTATAGATAAAGGAAACCCACACTCAACATTTCAAAGATTAAAA
CCCTACGTTGAAGATTTGAATGTCAAACTTGTGAAAGGTTTATCCGCAAA
CGGTTGGGATTTAACAAAATACCATTTAAATGCTGACGAATGGCGATATC
AATGGCCTGATAAAGCTCTTTAGTCTTGTTTATGGTAGATTATTATTTAA
AGTCTTTTAAAAACGGTGAATGTAAAAgaatatttattattttctgtttt
ctgtttttcttagtattttaaTTAATGATTAATTTTGAGGTTTTCCTTCG
AAAAGTAATTGGGTTTTGAAGTCGGAAgatattttttagcattttggcaa
atattttatactttttttagtATTCTCGCCAccaatatataaaattttag
catacagtatatggcccccaaaacggaggttttcattaaaatgaagattc
tgacttgtagatttatcagaattaaacgatttttgtttattttgaaagaa
tgatgaaattgattttgaaaaaataggcatgtttttgctggtttgagacg
gattcacaataacatatttgcgtctaaaggaaatactttaacaccaaaat
tagataaaaattgcatataactcactctagctccttggatattgaaaata
agttatgaaaacggggtatagggaactttctacacctaatgccgttcaga
gaatgcaaatacatctgtgactttagaggctagGTAAAAGATATACCGGG
TGctccacaaaaaagtttctctctttaaa

Run BLAST on NCBI

transcript from alignment at scaffold_440:344757..350687+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065560 ID=TCONS_00065560|Name=TCONS_00065560|organism=Clytia hemisphaerica|type=transcript|length=5931bp|location=Sequence derived from alignment at scaffold_440:344757..350687+ (Clytia hemisphaerica)
agATGTTATAAAAAAGTACATGAAGTTTTAAGAAATGGTTACTGAGAAAA
ATGATTTATTTGAAACCTATGGTGCTAGTCAAAGGTACTATTATGACTTG
AAAGATGAAGAAACCAATCATATTCAACATTATAATCAAAAGGAAAAACA
CAAGGGATTTGCGAACAAAATAAAGGAGACTTTCAAGGTGATTATTATAT
GTGAAATTATTATAAAGATTCATAAGTTTGAAAAGTTACGATTCTGATTC
TAAGAGCTCTGATTCTTGAGCTGACTTCTCATATTATCTCAAGCCAAAAT
CTCTATTAGACATTTGTTTATTAGCCCTTTTGGAAACATTATTttaagct
tcaaaattttttgtcacGTGTTCGTAttgattcattttatttttctactT
ATCTATAGAGTGGATTTCTACCTCAAGGCTACCCAACAAGTGTTAGTGAG
GATTATTTAGAATACCAATTATGGGACACAGTACAGGTTTGATATTCTTG
TTATCATATAGTGATAAACACTTTAcagtttgtttatttattttcattct
tttgaTAAGCGATAGTAAACATTTCAAACTACTTTTACGAGTTGTAAGTG
ATCGTTTGTTTCAAATgcaatgaaatgaaatgaaatgaaaaaccaaaaaa
tcatTGTGTATCATTTGATGTGTATATCACTCGAAGAAATGAACTTATCT
GTTGTATCAATGTTTTATTTAATCATTGACACATCCTTCCACGAGATACA
CCCAAGCATGAAAgctattttatctttttttaggctttttgttcctccat
tacTGGAATGTTGGCAACACAAGCTATCCTCAAAGGTTATGGTGTAGGAA
ATGAGAAAGCAACTGTGATGGCTGCCTCAATTACCTGGATGCTGAAAGAT
GGAGCTGGTATGATAGGCAGAATCATGTTCGCTTGGTTGAAAGGGTAAAA
CAATAAGAAATCAGAATAACTGAGCCATTCTAGATTAAAAACGCTATATA
ATACTACTTTAGTAAAATACTTTCTTGCAATTAACAAGTCGCTCTTAATT
TATTAGATGTTAGTTTGATTATTAAATCTTGAAGTCATAAAGAAGgatca
atgataatttttttgtattcaTAAAATTCTTTTTAACCTATTGTATGTAC
AAGTAAAAAGAGTTATAAGGGGTCGGTTccattttctttctattttagAA
CTCAACTAGATTGTGATGCTAAACGGTGGAGGTATGATTTTGAACAATCT
AAAAACTTAACGACGATAAAAAGATCTTGCCCTTGCCTCCTTGTCAATTT
GTGAGctagatttccaaaaaaagagAACCCTGGGTTTgctaaatgtttat
tttttggaTAGCTTTTTGAAATACTATTTTAGTACACttgactagccgtc
acccggcgtcgcactcgccgaggagtagataagctgaatgcatcataagc
cctttggatTGTTGAGAGGTTATGTACTGTTTTATTGTTTTAGGTTATGT
GCTGATGTTCTGAATGATACAGCTATATTCCTTGATCTTCTGGCACCCAT
CTTCAAGAGTTACTTCATTTTTATTGCATGCTTATCAAGTATCACTAGGG
TAAAAATTCAACAGCTTCATGCTGAACATGAATGATAAAGATAAATTAGC
AAACCCATTTGATTTATTCAAAGAGTTTCTTTTGGCTTTCTGTAAAAATG
AGAAACCAATAGAAACCAACTCTTTTATTATCATTATGCTATAGTTACTT
CTACTACTCTAAGTGTGATCTCTTTACAACCACCATTTGGAAAGCATCAG
AATAATTAGATTAATCCCCTTGAGAGTTGTTTCCACATGTATTGAAAAAG
AGTCCACACTTAAGTAATGTTTACTACAAAATTTCTTAGCCCAAGCTAAT
GGTTTTGATCAGCCAAGCTAGCCAACCTTGATGTTGGTAAACATTATCTC
ACTTTAATAAAATAATCTCTTTTCACAGTCAATCGTAGGTGTGGCTGGAG
GGGCGACAAGAGCAGCTTTAACACTTCATCAAGCGAGAAGAAATAATATG
GCTGATGTCTCTGCCAAGGATGGTAGTCAGGTATTTTATGAGAATGGAAT
CcctgattttttctgaaatttctcaGGAGATGAAACAGGCTCTTTCTTTT
GTTACTGGAGCTATTATTACAATGAACAATGATATTAACGAGGTTAAgaa
gcaagtgtttatttagaccgtTTAATGCGATATCGTAGGCTTttgtacat
aagatttcacttgcatggtttgctttggtaatttatgtacaggcctaccg
TATCACACTTTACGGTGAAAATAAACcgttgcttaacctcgctattgcCG
GCTAGGTGGCTGTTCAGTTGGTACAGTATTACCTCTCAATCAAAGGGTAG
TTCTAGCTCAGCAATTTATCTTTCATGTCTAGTGCAGCAAGCAAATAGTA
AAGAATTTTATAATGCTTTCAGGAAACACTGGTCAACTTGATGGCTTTGA
TAGCAAGTTTCATCCTAACACCAATTGTCGCCGATCGTCCAATGTAAAGT
AtctcattttttttcaactttcattttATCTGGGGTTGTTTTTGAATGTA
AAATTGAGATTATGGCCACAGAGAGGTGTATTATAAGTTGTTTTATacaa
aaaagagttttttgaaCTTCCAATTAAGTTTTGTACAAATAATTCTATCA
TtacataaaaaaacattttccagaTAGAATTTCTAAGTTTGTATTGTTGA
TAGTTTTGCATTGACCAACTTCTTGTTGTTAGAATACTCCACTTGGGAAT
TGATCATAATCTAATGATTATTTTTGCTTTTCATTTATAGATTAGTCTGG
TTCTTATTTATTCTCTTCACTTTCTTTCACCTGTTTGCTAATTATCGTGC
TGTCAGTTGTGTTGTCATGGAAACGCTGAATATGAATAGACTGTACATTG
TCATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGTC
AACAAACTAGACCCAGTGCTAAGAAGTATNCTGTACATTGTCATGCAGCA
TTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGTCAACAAACTAG
AACCAGTGCTAAGAAGTATGCTCTTTTTCACTTGCTTGCTTGGTGTTCTG
TAATCTCATAAAACGGTTTCAAAATGACCAATGACCAAACTTACTTTTGC
TACAACTTTTATTTACCACAACGGGTTTtctgttttaaaaatttctttgt
ttagttttcttgaaataaattGACCACATTACCCAGTAGTGTATTTCCTA
TAGAGTAAAGGAATAATGGACTTTTTCAGGCCTGATTGAATATGATTTGC
TATCACGCATTGTACTCCGCTTATACTATACCTTTTGAGCCTGTATACTT
ATCAAAAAAGCCTTTTGCTTTGGGATATCTCTTTAATGATCTTACCGAAT
GACCCGTTAATTCAAGCCCTAAACAGCTTGGGCCAATGAAATTTAGGAAT
TAGATATGCATAGTCTTAATTCAAAATTTaggtattactttttaaatttg
actccttaatctttaaaaaatgtgaaaaactaattttcttacATTCCTTT
TGTTTCTCAGGGCACTGTAATTTCAAAGACATTTGTATTGGTTCGAAGTT
GGGAAGTATAATTAGGACGTTAGTAAAGTAGTTTTGTTTATAACAGAGCT
GTAAGCTGTTGAGCTGTAAGCCTTAGGTCTATCTTAATTCAGGAGCTACT
GTGTAGTATTACAAGCATCAAGGTTGTAACAAGAATCCCTTTTTTACTTT
CTCTAATCAACAAAGTCAAGTATGATTTTCTATAGAATAATCCATTGATC
CACTTTTTCGTTCTACCCGCATAGTATTGATTATTTTTATGCTATCCTTC
TTTACAATATTCCTCCAATCCTACAATTCAGGTATAAAATCCACAATAGT
GATTTagaagaaattttgaagaatgaaAGAAATCAATACATTGTTTCATT
TGACCAAGGTAAGCTTAACACATTGCCAAAATACTATAATTTGCATGTGT
ACTTCAAATATGAAAACAAAGTAGCCTAATAATATCATAAGCATCTTATA
GGCACATATTCTATTTTAATTAACACACTCACTGCATAGGTGATATGACT
TACTCTCCCTACATTTAAGTTTCTAAAGTTTATTAGATCCTGGACCACTG
TACCTTTCTATTGCCTTTCGGTGTTGAAGAGAAATTATCTCTTTTTCTTG
CAAATACCCTATTTGTAACTTTGGCACACTTTTAGATTATGTTCCCTTCA
GGGAATTCGAATATAATTCTTTTGTATCTTAGGGAAAGTCTATGTTGCAT
TGCGCCATGGAGTTGACGATAGTATTATCTTGCAAAGTAGCATAATGGCA
ATCCTGTTGGATATTGCTTTACGTAGTAGTGATATTGTAAGAAATCATAC
TTCTCAAATTGTAATTCATACTGTATTTCGTACGTTTATCTGACAGGTGA
CGGCTCATAGCATATACAAAGTACCAATAAAAGCTTGGCATTTAAGCTTT
CAAGAGATTGGTTTTCGAGCATCTGTCACACTCCTAATGATCATTCTAAG
GAAAAAAGAccgcttattaattttgaaaaaatttcaatcgTCACAAGCTG
AactgctctaaatagcctggtttTAGCTTATAATTACTTTTTTTTCGGTA
ATTGCAGCTGTAATAGTTAAACCATTTTCTTTTAGAATTCCCAATATCTA
AATAGTATCAGGAGCTGTATAGGTAaggattttcatttttgcaAGTTCGG
CCTCTAAGAGTTCCTAAGGAGCTTGTGCTCGAGTTTTTCAGGGCTGAATG
ATAACTAGCAATATGTTTAGCAATATGTTACAGTcattttaatgatattt
ttttcaatcattgaTCCCCTTTCTTACAGCTTTTGACGCAAGAGCTAATT
AGGTGTATTAAAGGACCaggaaatgagaaaattttatatttcttCATGAT
CAAAACCCTGATATGGTGATTACCCGTGATGCACTCTTCTGTTAGTAGAG
CACGGAGGTGCGTCGCTTTTTTCGCACTTACTTTTACCCCAAAATACTAT
CTTTAAAATCAAGGAATTGCGTATTATGAAATGGTATTGTTGATATGCTG
ATTTTCAATTGCAGATAAAGGAAACCCACACTCAACATTTCAAAGATTAA
AACCCTACGTTGAAGATTTGAATGTCAAACTTGTGAAAGGTTTATCCGCA
AACGGTTGGGATTTAACAAAATACCATTTAAATGCTGACGAATGGCGATA
TCAATGGCCTGATAAAGCTCTTTAGTCTTGTTTATGGTAGATTATTATTT
AAAGTCTTTTAAAAACGGTGAATGTAAAAgaatatttattattttctgtt
ttctgtttttcttagtattttaaTTAATGATTAATTTTGAGGTTTTCCTT
CGAAAAGTAATTGGGTTTTGAAGTCGGAAgatattttttagcattttggc
aaatattttatactttttttagtATTCTCGCCAccaatatataaaatttt
agcatacagtatatggcccccaaaacggaggttttcattaaaatgaagat
tctgacttgtagatttatcagaattaaacgatttttgtttattttgaaag
aatgatgaaattgattttgaaaaaataggcatgtttttgctggtttgaga
cggattcacaataacatatttgcgtctaaaggaaatactttaacaccaaa
attagataaaaattgcatataactcactctagctccttggatattgaaaa
taagttatgaaaacggggtatagggaactttctacacctaatgccgttca
gagaatgcaaatacatctgtgactttagaggctagGTAAAAGATATACCG
GGTGctccacaaaaaagtttctctctttaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041087	XLOC_041087	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_440	supercontig	scaffold_440:344757..350687 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.319807	0.514158	0.234198	0	0.604204	1.22523	0.434901	0.956288	1.03742	1.32181	2.53823	0.221421	1.43331	0.834224	0.962832	1.26506	1.04841	1.42408	0.616843	0.697113	1.29398	0.81439	0.23504	0.791899	0.739174	0.266378	1.22401	2.1111	1.70268	0.849006

Blast

[Close]

BLAST of TCONS_00065560 vs. Swiss-Prot (Human)
Match: RUS1 (RUS1 family protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 2.768e-84
Identity = 141/266 (53.01%), Postives = 191/266 (71.80%), Query Frame = 2

Query:  194 FLPQGYPTSVSEDYLEYQLWDTVQAFCSSITGMLATQAILKGYGVGNEKATVMAASITWMLKDGAGMIGRIMFAWLKGTQLDCDAKRWRLCADVLNDTAIFLDLLAPIFKSYFIFIACLSSITRSIVGVAGGATRAALTLHQARRNNMADVSAKDGSQETLVNLMALIASFILTPIVADRPIXXXXXXXXXXXXXXXANYRAVSCVVMETLNMNRLYIVMQHFIEHEAFLSPKQVNKLDPVLRRHCNFKDICIGSKLGSIIRTLVK 991
            FLPQG+P SVS DYL YQLWD+VQAF SS++G LATQA+L G GVGN KATV AA+ TW++KD  GM+GRI+FAW KG++LDC+AK+WRL AD+LND A+FL+++AP++   F      S++ + IV VAGGATRAALT+HQARRNNMADVSAKD SQETLVNL  L+ S ++ P+V+  P      F   T  H++ANYRAV  +VMETLN  RL +V++H+++    L P   N+++P+         + +G  L  ++ ++ +
Sbjct:   77 FLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLDPTAANRMEPLWTGFWPAPSLSLGVPLHRLVSSVFE 342

The following BLAST results are available for this feature:

BLAST of TCONS_00065560 vs. Swiss-Prot (Human)

BLAST of TCONS_00065560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RUS1	2.768e-84	53.01	RUS1 family protein C16orf58 OS=Homo sapiens GN=C1...	[more]

You are here

TCONS_00065560 (transcript) - C. hemisphaerica