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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065581 ID=TCONS_00065581|Name=TCONS_00065581|organism=Clytia hemisphaerica|type=transcript|length=1884bp
ACCATGTTACATAAATTTTGACTTTACACAGcaaataaaatatattaatc
TGAGAAAAATATCATCTGGGCTAAGGCTAAAATGACGACTCAAAATAAAA
GTATTTCTCCTTGGAAGAATCCTTGCCTTTTTGGAGTTTTCAGTATCGAG
GGATAAATTTCAGCTTTAATAACCCGTTTAGCTATGAAGATCCAACTTGT
TCTCCTTCTATCAACATTGTTGCTACTACCCACAATAATGGCGCTTGTTG
TTgttgagaaaacttttgaagaGAGACTCACTGATTATAGCAAGACAGTT
CCTTACATACCGCATAGAAATACAGAGGAGTCATTACTCGAGTGCGAAAG
ATTTGTCACACGTTTATGTCGTGATAAAATGTATCGAAATGTCGATCATT
TCAACAGCTGTTGTGCTGTGGAATACCAGTTTTGCTTGGAAAGAAAAACA
CGAATTTCAGACGGCCTCCCTTGTGAAAACACACTGGTACCTGTCGTTTT
TTGTTATACTCCTGACAACTGCTTCACATGCTACGTTGAAACTATTTTAT
GCACTCATGTATAGTAATTGAAAATGATTATCTTACAATCCAAAAGTCTG
GTCAACAACCAAAACTATTTGTGAATGCTGGTTGGTTGACATTTGGCTCA
GTTACATTATAATTTGTCGCTAACCAATTGGATTTTTCGAGAAGAGATAG
AGTTTTTACAAgcccttatttgatttggttggttgttaaccagtattaaa
acaatttttgttactttttctaaaagaacacgtaatttttattacttcaa
atgaccaattattgaagtatcttataaaaactccatcttatCTGCTTATT
TCACAATTTATTGATTTATCTTATTTGTTGTATGTGAATATTCAGGCCTG
GGGTTTGAATAAAACAAATTCAGTTATATGATTTCACGCAAACCCGATTT
TCTGAATTTGTTTCGGGAAAAATCGGAGAGTTTGCGGATAATCGGTGGAT
TTTTACGTTCacgcaattttttattttaactcacgcattcacgcaaacca
caTCCTAAGGCATCCCATCCTTTCTGTAGCATACATAGGATCCTTTcctc
aaatattttattttaatttttcttcacTATTTACAATCTTCAAAATATTA
CTTAATTACGAAATATCACTCACACGTAGCTGTATTCTAAATTCAAtgtt
ttcatcaattttcaagCATCGAATACAGTTGGCACTCTCCAATTCGACGT
GCTACTAAAGGGAAGagattttggcgggaatttaatttggcggatagctt
gaaaaataaaatttggaggatgaagaatatttttggccaaaaaacggGGA
ATGAATACAATAATTCAAATTTGGCAGATGGcgggaaaaataattttgat
tggaacttaatttggcggattttggtcaaatccgccaaattttctttccg
ctaaaatttctttcccttaaggtattcgGTACGCTCTATTATTCCAATTA
TTCGATGATAATGTAAGTCAACGCCATCAAGAACTCTTGTAAACGACGCT
TTACTATTCTATACACTCCCTTGAAATCTAAGTTCTCTTGAAAATCGGAT
TAGAAAGCGTAAACTGTATTTTCTTTCCTTCAATATCACGGTTTCACGCA
ACGGTAATAAATATCCGTGACAGTGTCTTCACCGTACATTCCCCTCTTAT
ACACCAATTGTAAACTGACCACGCAACGTTTGGTGTCTCGTGATTGGATA
ATCTGCTTAGCGCagtatttattcaaatttttgacgTCGTCGGTGGTGCC
ACGGACACCGTTATACGTAATATCTGAGATGTGGATGGCCCCTTGACATG
TAAGCTCAATTTCTTGATTCCCTCTTGCAGATGC Run BLAST on NCBI transcript from alignment at scaffold_440:441874..444571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065581 ID=TCONS_00065581|Name=TCONS_00065581|organism=Clytia hemisphaerica|type=transcript|length=2698bp|location=Sequence derived from alignment at scaffold_440:441874..444571+ (Clytia hemisphaerica)
ACCATGTTACATAAATTTTGACTTTACACAGcaaataaaatatattaatc
TGAGAAAAATATCATCTGGGCTAAGGCTAAAATGACGACTCAAAATAAAA
GTATTTCTCCTTGGAAGAATCCTTGCCTTTTTGGAGTTTTCAGTATCGAG
GGATAAAGTGAGTACAGtattttataaatatatttttaaactcAAGGATA
TAAGAAGATAATTTCTCGTCTCAACTAGGTTAGAAATGGGCTGTTTTACA
TTTTCATTACATAAAATTGGaggcattttgaaaaattacaaaatcaattt
tcaatctGACACTGAAATTctgctttgttttgaaaataattcctCTCGGC
AACTGTATTATAAAACTCATTTCTTTCTAGTTTCAGCTTTAATAACCCGT
TTAGCTATGAAGATCCAACTTGTTCTCCTTCTATCAACATTGTTGCTACT
ACCCACAATAATGGCGCTTGTTGTTgttgagaaaacttttgaagaGAGAC
TCACTGATTATAGCAAGACAGTTCCTTACATACCGCATAGAAATACAGAG
GAGTCATTACTCGAGTGCGAAAGATTTGTCACACGTTTATGTCGTGATAA
AATGTATCGAAATGTCGATCATTTCAACAGGTATGTTTCTAATCATAAGT
TCCTTCACGTCCCACCAGCGAAATTTTGTTCTCTCAGGAACGATATTTTC
GGTAGCCGGTAGTTTTGATTAAGAGTTTAGCTATTGCTAAAGCCGAAATA
ATTCGATTCAAAGTTTACGCATTGaagaatttttagttttttgagaaCGT
CAAGTTAAACTTTCTTATCCCCGGTAAATGTTTCAAATCGTACTAGGTGG
TCATTCTCAACGTCGTTGCGTGTTTTCAACGCATTTGTTGGTATGCCAGG
AAAAAAACAGCGGAAATTCATCCggaatgagaaagtttagcCATCATGCA
GTATAATATTTACTCTAAAGAACAAAAAGGTATACAGATGACGATGTTTG
CTAATATGATTTTTTCCCAAATGATTTGCAGTCGGTGCAATTTTGAGGTA
TGATGATTGCTAGTATAATTACTTGCTGGAAAGACAATTTCAAGTTGATT
ATAGGTTAAaacccttttttttttaaatttgggaATCTTAATAAGTTAAT
TCGAAATTATATGGGCCTTGtgtttagaaaatttaaaaacattttaacgt
ataatttctatcaatttcTAGCTGTTGTGCTGTGGAATACCAGTTTTGCT
TGGAAAGAAAAACACGAATTTCAGACGGCCTCCCTTGTGAAAACACACTG
GTACCTGTCGTTTTTTGTTATACTCCTGACAACTGCTTCACATGCTACGT
TGAAACTATTTTATGCACTCATGTATAGTAATTGAAAATGATTATCTTAC
AATCCAAAAGTCTGGTCAACAACCAAAACTATTTGTGAATGCTGGTTGGT
TGACATTTGGCTCAGTTACATTATAATTTGTCGCTAACCAATTGGATTTT
TCGAGAAGAGATAGAGTTTTTACAAgcccttatttgatttggttggttgt
taaccagtattaaaacaatttttgttactttttctaaaagaacacgtaat
ttttattacttcaaatgaccaattattgaagtatcttataaaaactccat
cttatCTGCTTATTTCACAATTTATTGATTTATCTTATTTGTTGTATGTG
AATATTCAGGCCTGGGGTTTGAATAAAACAAATTCAGTTATATGATTTCA
CGCAAACCCGATTTTCTGAATTTGTTTCGGGAAAAATCGGAGAGTTTGCG
GATAATCGGTGGATTTTTACGTTCacgcaattttttattttaactcacgc
attcacgcaaaccacaTCCTAAGGCATCCCATCCTTTCTGTAGCATACAT
AGGATCCTTTcctcaaatattttattttaatttttcttcacTATTTACAA
TCTTCAAAATATTACTTAATTACGAAATATCACTCACACGTAGCTGTATT
CTAAATTCAAtgttttcatcaattttcaagCATCGAATACAGTTGGCACT
CTCCAATTCGACGTGCTACTAAAGGGAAGagattttggcgggaatttaat
ttggcggatagcttgaaaaataaaatttggaggatgaagaatatttttgg
ccaaaaaacggGGAATGAATACAATAATTCAAATTTGGCAGATGGcggga
aaaataattttgattggaacttaatttggcggattttggtcaaatccgcc
aaattttctttccgctaaaatttctttcccttaaggtattcgGTACGCTC
TATTATTCCAATTATTCGATGATAATGTAAGTCAACGCCATCAAGAACTC
TTGTAAACGACGCTTTACTATTCTATACACTCCCTTGAAATCTAAGTTCT
CTTGAAAATCGGATTAGAAAGCGTAAACTGTATTTTCTTTCCTTCAATAT
CACGGTTTCACGCAACGGTAATAAATATCCGTGACAGTGTCTTCACCGTA
CATTCCCCTCTTATACACCAATTGTAAACTGACCACGCAACGTTTGGTGT
CTCGTGATTGGATAATCTGCTTAGCGCagtatttattcaaatttttgacg
TCGTCGGTGGTGCCACGGACACCGTTATACGTAATATCTGAGATGTGGAT
GGCCCCTTGACATGTAAGCTCAATTTCTTGATTCCCTCTTGCAGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065581-exon-scaffold_440-1491911889:441874..442030 | TCONS_00065581-exon-scaffold_440-1491911889:441874..442030 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1510915933:441874..442030 | TCONS_00065581-exon-scaffold_440-1510915933:441874..442030 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1575043694:441874..442030 | TCONS_00065581-exon-scaffold_440-1575043694:441874..442030 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1491911889:442254..442503 | TCONS_00065581-exon-scaffold_440-1491911889:442254..442503 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1510915933:442254..442503 | TCONS_00065581-exon-scaffold_440-1510915933:442254..442503 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1575043694:442254..442503 | TCONS_00065581-exon-scaffold_440-1575043694:442254..442503 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1491911889:443095..444571 | TCONS_00065581-exon-scaffold_440-1491911889:443095..444571 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1510915933:443095..444571 | TCONS_00065581-exon-scaffold_440-1510915933:443095..444571 | Clytia hemisphaerica | exon |
| TCONS_00065581-exon-scaffold_440-1575043694:443095..444571 | TCONS_00065581-exon-scaffold_440-1575043694:443095..444571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:441874..444571 + |
Blast
The following BLAST results are available for this feature:
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