TCONS_00065608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065608
Unique NameTCONS_00065608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065608 ID=TCONS_00065608|Name=TCONS_00065608|organism=Clytia hemisphaerica|type=transcript|length=1530bp
ATTGGGTTGGTCTGGCCAATGGAATTCGAAGCATTAAGTTATCACCAAAT
TTTCCAgattacaaaataaacaaagatgcAGCATAACTACGCCCGTAAAC
AATATCCATCCATACAGCAACCGCCTAATTCAAATAACGCCCATTGGTCG
AACAGTACAGGTAGAAAAATACGCTATCACGAAGCTCCAACATACGCCCA
AGAACCACCTGCACCTTATACAAGCAATAACAACTTTGGGGGCGGTGGAG
GCGGGATTGACAATGGAAAAAGGATCGAGATTACAAGAGAGATTTTCAAA
GTACAAAGGAGATTCGATTTAGTGAAATGGTTTAAACGACACCCAAAGAC
CGTCATGTGTTTCTCTTATTTCTGTGTTCTCATCATTGGTATTACACTTG
GATTTGTACCTTACATCACAATGTATATGAACGCTTGTCAATCTGATAGG
AAACTGTTGACAGATTTCCAAGGCTTAATAGAACGTTACAATGATACAAA
CATTGTCACTAATACTGGAGCAAGCAGTGGTGGAATGCCGTTGACTGcAC
CTGTTTACGGTATGCTTCCACATAGAGCATCTGCAAGAGGGAATCAAGAA
ATTGAGCTTACATGTCAAGGGGCCATCCACATCTCAGATATTACGTATAA
CGGTGTCCGTGGCACCACCGACGAcgtcaaaaatttgaataaatactGCG
CTAAGCAGATTATCCAATCACGAGACACCAAACGTTGCGTGGTCAGTTTA
CAATTGGTGTATAAGAGGGGAATGTACGGTGAAGACACTGTCACGGATAT
TTATTACCGTTGCGTGAAACCGTGATATTGAAGGAAAGAAAATACAGTTT
ACGCTTTCTAATCCGATTTTCAAGAGAACTTAGATTTCAAGGGAGTGTAT
AGAATAGTAAAGCGTCGTTTACAAGAGTTCTTGATGGCGTTGACTTACAT
TATCATCGAATAATTGGAATAATAGAGCGTACcgaataccttaagggaaa
gaaattttagcggaaagaaaatttggcggatttgaccaaaatccgccaaa
ttaagttccaatcaaaattatttttcccgCCATCTGCCAAATTTGAATTA
TTGTATTCATTCCccgttttttggccaaaaatattcttcatcctccaaat
tttatttttcaagctatccgccaaattaaattcccgccaaaatctCTTCC
CTTTAGTAGCACGTCGAATTGGAGAGTGCCAACTGTATTCGATGcttgaa
aattgatgaaaacaTTGAATTTAGAATACAGCTACGTGTGAGTGATATTT
CGTAATTAAGTAATATTTTGAAGATTGTAAATAgtgaagaaaaattaaaa
taaaatatttgaggAAAGGATCCTATGTATGCTACAGAAAGGATGGGATG
CCTTAGGAtgtggtttgcgtgaatgcgtgagttaaaataaaaaattgcgt
GAACGTAAAAATCCACCGATTATCCGCAAACTCTCCGATTTTTCCCGAAA
CAAATTCAGAAAATCGGGTTTGCGTGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00065608-protein

>TCONS_00065608-protein ID=TCONS_00065608-protein|Name=TCONS_00065608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MQHNYARKQYPSIQQPPNSNNAHWSNSTGRKIRYHEAPTYAQEPPAPYTS
NNNFGGGGGGIDNGKRIEITREIFKVQRRFDLVKWFKRHPKTVMCFSYFC
VLIIGITLGFVPYITMYMNACQSDRKLLTDFQGLIERYNDTNIVTNTGAS
SGGMPLTAPVYGMLPHRASARGNQEIELTCQGAIHISDITYNGVRGTTDD
VKNLNKYCAKQIIQSRDTKRCVVSLQLVYKRGMYGEDTVTDIYYRCVKP
Run BLAST on NCBI

transcript from alignment at scaffold_440:443618..447868-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065608 ID=TCONS_00065608|Name=TCONS_00065608|organism=Clytia hemisphaerica|type=transcript|length=4251bp|location=Sequence derived from alignment at scaffold_440:443618..447868- (Clytia hemisphaerica)
ATTGGGTTGGTCTGGCCAATGGAATTCGAAGCATTAAGTTATCACCAAAT
TTTCCAGATTACAAAATAAACAAAGATGCAGCATAACTACGCCCGTAAAC
AATATCCATCCATACAGCAACCGCCTAATTCAAATAACGCCCATTGGTCG
AACAGTACAGGTAGAAAAATACGCTATCACGAAGCTCCAACATACGCCCA
AGAACCACCTGCACCTTATACAAGCAATAACAACTTTGGGGGCGGTGGAG
GCGGGATTGACAATGGAAAAAGGATCGAGATTACAAGAGAGATTTTCAAA
GTACAAAGGGTGAGAAATATTGAATTAAAAAAATGATGAAAATTTCCAAA
TTTCAAGGAAATTACTTTTAATTGTACTTTGATTACACACTCAGACTCGA
ATCCAGTCCCTTAGCCCGCTTTTTTATGATTCTGATAGCGCTCAGAAGAG
GTTTGTATCACGTCCATCAGTAAAATTAAAAAGTGGTTCAAGTGACTCAA
AAATGAAACTCGTCTAAACTTGATGTATTAGTCTGACACTAGTACCCATT
CTCTTGAGCTGGTCGTGACTTCTAGTATTTACCAAAAACATCTTCCTTGG
TCCTATTTGCAGGCCCTCTCTCAAAAAAGTCTCAAAATCCTATCTACTTT
CGAACCAATCAGATACGGTTGCATCCCACAAAAAATACTACGCATCCTAA
GGTTGGTTTCTTAAAACACCTTTTCGACCGTAGACGCCAATTGCGGCGTG
GGCATTTTTTTGTCCGTTTTTCCACCCTAAGACCGTACTAATCTTTTTTT
CGCACCTAAAGACAATAGAAAAAATTGGATTGGAGCGAATTTACGGTGGT
AAATCAAATATTGAAGTGGCACGCACCTGACCGCGCGACTACAGTCGAAA
AGGCGTATACGCTATTACTAATGTTTTTCAATCTTCATTTTCGTCTTCCT
TTAGAGATTCGATTTAGTGAAATGGTTTAAACGACACCCAAAGACCGTCA
TGTGTTTCTCTTATTTCTGTGTTCTCATCATTGGTATTACACTTGGATTT
GTACCTTACATCACAATGTATATGAACGCTTGTCAATGTAAGGAATTCTT
TAATGTTTTCGAAAAAAATAAACTGTTTTCAATGTACCTAACTTTTTCCG
CTGGGACCCCATCCCCACTGGCCGAAATCTGGAATGAAAAATGGAATTTC
AGCCCCATAGGGAAATTGACTTTGATTTCATCTTCGCTAGAAATCAAATG
CTCAGAAATTGCACTCCAAAACCACCCCACTGAATTTTTCAACCTTGGAA
CAAAATAATTTCCATCCCTATTAGGATTTCAATAGGAATTTCTATCCCCA
CTGAGAAAAAAGTTTCACCGGGGCTGTGAGACAGAGGTGTATTTGTCTAT
TAATTCAAAAATAAGATTAGAATTGGCAATCGATTTCGAGCCATCCAATC
ACTGTATTTCTTTCTGTTGTCAATATTAAACCTTGCTGCTGACGAAATTT
GATTGCAATTTAATTGGGGAGTTAAGAGTTACCTCCGTCAAACTCTGTTA
GGCCGTCAGGAACCAAAATTCCACCATTGAAAGTATTTTTTGAGATTCAA
GAATTTTGTCAATAATTTCGGAAATATTGAATATTCTTTTACAAATTTCG
AAATTTCAACCAAATTTTGGCGAAATTCTAAGGCTAACCTATTTTTCGAA
CCACCGTCGTCCTGATTTTGCTCAATATCCGCCAAACCGTTCAAAAAAGA
GCCAATTCTGCTCATCGATCAACTTTGAAACCATCCCATAGAATTCGTAA
AAATACCCTACACCCCTTTCTCACAGCCTCGGTGAAACTTTTTTTTTACA
GCGGGGATAAAAATTTCAATTGAAATCTCAATGGGGATAAAAATTCTATT
ATTTCATCAAGGTTAAAAAATCCAGTAGGGATGGTTTTGGAGTGCAATTT
CTAAACAATGAATTTCAAATGGGGATGAAATCAAAGTCATTTTCTCAGTG
GGGCTGAAATTCTAGGGTACCTTTCCTACCAGGGACGAAATTTTTGCCAA
AATTTCCAGTGAGGCTGGGGCCCCAGCTGGTCTGTGACAGAACGGTGTTA
CCATGCTCAAAATGAATTTTATTAAAGAAAAATATGTTAAAAAAAAACAT
TAAATATTAATTTTCCTTCGATTATAATCTTTTCTTTTCTCGCCATAGCT
GATAGGAAACTGTTGACAGATTTCCAAGGCTTAATAGAACGTTACAATGA
TACAAACATTGTCACTAATACTGGAGCAAGCAGTGGTGGAATGCCGTTGA
CTGGTAAGACATCTCCAGAGTTTGCTATGATATAACCCTAAAAAAACTCA
AGAATGATAAAGAAGGAGTTACTAAAAACACAATGGACTATCAAACCTTT
GATCTTATCTGAAATTTCATGCTATTTCCAAGCTCCAATGGTATTTGATA
GTTCAATGGGAGGAACTCTTTGGAGGGTCTTATAGTTTGTCCTTTTATCG
GCTTCCTAGCAGCCATACACTCTTGCGTAGGAGAGCAGAGTAAGGAAGCT
GTAAGAGTTATACTTTTGAGCCCCGAGGTTTTGTCAAGAGCTCTTATATG
ATACACCTTTTTGTCCGTAGCCGCCAATTACCGCGCGGGCATTTCTTTGT
TCGTTTTACCACCCTAAAACCGTTCCAGTCTTTTTTTTCGTACCAAGAGA
CAATAGAAAAAGGCGTAAAAAAGGATTGGATCGAGTTAGGAGGATAATTA
AATAATAAAGTGACACGCGCCTGACTGCGCGACTGCGGTCGAAAAGGTGT
ATTTAAGACGAATTTTGTTAGTACTAAGCTGTCCATCCAAAACTCTTTTA
AATTACCATATGAATACTTTTTCGAAAATATCTCCTTTTATTTTGTTTCA
GCACCTGTTTACGGTATGCTTCCACATAGAGGTATGCTCAAGATTTTTTT
AACATAGATTTCATGCTCTTCTAACATTCTAGTAATTCTAACCGCAGCTC
TTTTAGCATCCTCGACAGCTTATCACTCAATATGACACCAAACCTGCAAG
CCTGAAAACTTAGATAAAGTAGAGGATAATATAAATAAAGAGTTCTAATC
TTAACAAACCTGTGGCGACCAAGAGATATTTTCACTCCTCTCAAAATTCT
TTAAACTAATATGACACTTTGGAAAATGGTGACTTTTGATGGACTTATTC
CTCGATCTAGATGCCTTTCTACCCTTATTCAATGATCGGCTTTGTCAGTC
CTTTATTGAATTTTAAAGGTTCCTTACTGCAGTCATTTTCTTTTCTAGCA
TCTGCAAGAGGGAATCAAGAAATTGAGCTTACATGTCAAGGGGCCATCCA
CATCTCAGATATTACGTATAACGGTGTCCGTGGCACCACCGACGACGTCA
AAAATTTGAATAAATACTGCGCTAAGCAGATTATCCAATCACGAGACACC
AAACGTTGCGTGGTCAGTTTACAATTGGTGTATAAGAGGGGAATGTACGG
TGAAGACACTGTCACGGATATTTATTACCGTTGCGTGAAACCGTGATATT
GAAGGAAAGAAAATACAGTTTACGCTTTCTAATCCGATTTTCAAGAGAAC
TTAGATTTCAAGGGAGTGTATAGAATAGTAAAGCGTCGTTTACAAGAGTT
CTTGATGGCGTTGACTTACATTATCATCGAATAATTGGAATAATAGAGCG
TACCGAATACCTTAAGGGAAAGAAATTTTAGCGGAAAGAAAATTTGGCGG
ATTTGACCAAAATCCGCCAAATTAAGTTCCAATCAAAATTATTTTTCCCG
CCATCTGCCAAATTTGAATTATTGTATTCATTCCCCGTTTTTTGGCCAAA
AATATTCTTCATCCTCCAAATTTTATTTTTCAAGCTATCCGCCAAATTAA
ATTCCCGCCAAAATCTCTTCCCTTTAGTAGCACGTCGAATTGGAGAGTGC
CAACTGTATTCGATGCTTGAAAATTGATGAAAACATTGAATTTAGAATAC
AGCTACGTGTGAGTGATATTTCGTAATTAAGTAATATTTTGAAGATTGTA
AATAGTGAAGAAAAATTAAAATAAAATATTTGAGGAAAGGATCCTATGTA
TGCTACAGAAAGGATGGGATGCCTTAGGATGTGGTTTGCGTGAATGCGTG
AGTTAAAATAAAAAATTGCGTGAACGTAAAAATCCACCGATTATCCGCAA
ACTCTCCGATTTTTCCCGAAACAAATTCAGAAAATCGGGTTTGCGTGAAA
T

Coding sequence (CDS) from alignment at scaffold_440:443618..447868-

>TCONS_00065608 ID=TCONS_00065608|Name=TCONS_00065608|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_440:443618..447868- (Clytia hemisphaerica)
ATGCAGCATAACTACGCCCGTAAACAATATCCATCCATACAGCAACCGCC
TAATTCAAATAACGCCCATTGGTCGAACAGTACAGGTAGAAAAATACGCT
ATCACGAAGCTCCAACATACGCCCAAGAACCACCTGCACCTTATACAAGC
AATAACAACTTTGGGGGCGGTGGAGGCGGGATTGACAATGGAAAAAGGAT
CGAGATTACAAGAGAGATTTTCAAAGTACAAAGGAGATTCGATTTAGTGA
AATGGTTTAAACGACACCCAAAGACCGTCATGTGTTTCTCTTATTTCTGT
GTTCTCATCATTGGTATTACACTTGGATTTGTACCTTACATCACAATGTA
TATGAACGCTTGTCAATCTGATAGGAAACTGTTGACAGATTTCCAAGGCT
TAATAGAACGTTACAATGATACAAACATTGTCACTAATACTGGAGCAAGC
AGTGGTGGAATGCCGTTGACTGCACCTGTTTACGGTATGCTTCCACATAG
AGCATCTGCAAGAGGGAATCAAGAAATTGAGCTTACATGTCAAGGGGCCA
TCCACATCTCAGATATTACGTATAACGGTGTCCGTGGCACCACCGACGAC
GTCAAAAATTTGAATAAATACTGCGCTAAGCAGATTATCCAATCACGAGA
CACCAAACGTTGCGTGGTCAGTTTACAATTGGTGTATAAGAGGGGAATGT
ACGGTGAAGACACTGTCACGGATATTTATTACCGTTGCGTGAAACCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041102XLOC_041102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065608-exon-scaffold_440-1575043694:447560..447868TCONS_00065608-exon-scaffold_440-1575043694:447560..447868Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1575043694:446782..446914TCONS_00065608-exon-scaffold_440-1575043694:446782..446914Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1575043694:445566..445670TCONS_00065608-exon-scaffold_440-1575043694:445566..445670Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1575043694:444938..444967TCONS_00065608-exon-scaffold_440-1575043694:444938..444967Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1575043694:443618..444570TCONS_00065608-exon-scaffold_440-1575043694:443618..444570Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1510915933:447560..447868TCONS_00065608-exon-scaffold_440-1510915933:447560..447868Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1510915933:446782..446914TCONS_00065608-exon-scaffold_440-1510915933:446782..446914Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1510915933:445566..445670TCONS_00065608-exon-scaffold_440-1510915933:445566..445670Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1510915933:444938..444967TCONS_00065608-exon-scaffold_440-1510915933:444938..444967Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1510915933:443618..444570TCONS_00065608-exon-scaffold_440-1510915933:443618..444570Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1491911889:447560..447868TCONS_00065608-exon-scaffold_440-1491911889:447560..447868Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1491911889:446782..446914TCONS_00065608-exon-scaffold_440-1491911889:446782..446914Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1491911889:445566..445670TCONS_00065608-exon-scaffold_440-1491911889:445566..445670Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1491911889:444938..444967TCONS_00065608-exon-scaffold_440-1491911889:444938..444967Clytia hemisphaericaexon
TCONS_00065608-exon-scaffold_440-1491911889:443618..444570TCONS_00065608-exon-scaffold_440-1491911889:443618..444570Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065608-proteinTCONS_00065608-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:443618..447868 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0956771	0.0950997	0.211598	0.0873191	0.610245	0.467266	1.72491	2.50962	2.11451	2.91882	1.77003	1.80141	2.33662	1.90936	0.321262	0.823868	2.38349	2.82297	3.35129	3.25475	3.46368	2.41837	0.84571	1.83847	12.8273	11.1841	1.0479	0.699327	0.41139	0.356658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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