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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065609 ID=TCONS_00065609|Name=TCONS_00065609|organism=Clytia hemisphaerica|type=transcript|length=1183bp
ATCCACGTGCATAACTAAAGGCTATTACAAaatttaatgaaaaaacaaga
aaagaaaacaacacaATATAAAGAGCATCGAAgacgaatctgattggtta
ataaTATTGACAAACATCTTAATGGCACCCGACCATAACATCTCTACTAT
TCCATTACGATTACAAGCATTAAATGAAGACTTAGCTATGGCAGACACTC
ACACATTCCCTTTAAATGATTACGTAGTGATCCATCAGTGCGATCCACCT
TGTACCGATTGCGAATTCATTAAAGTCTCAAATAAAGAAGCTCTGCAACT
AAGCTTGAAAGAggagaaaaagaagaacgaaAAATATAGAGAACGCTTAA
ATGATATTTTAAAGAAATACGGACAGTCGTTACGTCAGATTGAATATCAA
AAAGCAAGAATCGAAGTTTTGACGCGACAATTGTCCGACGAACGTCGGGA
TGTAGGGAATATTAGCGACTTTAAATTGGTAGCAAAAGACGAATATACCG
TCATCGAGCATTCTGACGACAGTCTGACGGATGATGACTTGGTTTGTTTT
AACAATAAAgttaaacttgaaatttttactGATTGAGACTTGCAAGTCTG
GATGTGAAACCCGAAATGTGTGCCCGAATCCCGTATCGGATATCGGATTT
GAGAGATCGAATTTCAAGATTCGAACAAATAGCACACTGTTGCTGTAATA
GTAagaaagaaaagtgaaaatattcaATACGGCTCTACAGTATTACGAAA
CTTCAGGTATATATTCTATATTATCAATCTCATCAAATATCGCTATCGGT
GCATCAAAGACATAATACCCATCTTTCGGAATTTTGTTTCATGATTTCTG
GAGACACTTATTTTGCCGTGTATATCAATTTTAAGGCAAATTTTAACCCT
GGTTGTATTCCAAGTTCGTGATAATTTTAGAACTATATCCATACTTTTCC
CCTGTCGTTATCCCCCCCGTCCCCATCTTTGTGATTACCCTTTTAAATTT
GGTACCATAACCCTCCCGAAAATGCTTTAACAAGATATATAACTTATCTT
AGAGAGCTATAGACCAATCTCTAATAGaatttaacttttatttagtaATG
TACATTGGTTTATAATTTTGAGGtgtaaataataaaatttgttatgtatt
ttatagaaaaaagtaATATCAATGAAACCATAC Run BLAST on NCBI transcript from alignment at scaffold_440:471289..479496- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065609 ID=TCONS_00065609|Name=TCONS_00065609|organism=Clytia hemisphaerica|type=transcript|length=8208bp|location=Sequence derived from alignment at scaffold_440:471289..479496- (Clytia hemisphaerica)
ATCCACGTGCATAACTAAAGGCTATTACAAGTACTTACAGTATACACGTT
TTTTTTTATAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATA
AGAACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAAACTAAGAACA
TCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAAACGTGTATA
ATTTATTCTTTGACTTTTTTACTATTTTGTAAGTCCTGCATTGATTTGAT
GAAGGAATACACCTTTTCGACCATAGCCGCCAATTACCGCGCGGGTATTT
TTTGTCCGTTTTACCACCCTATAACCGTCCGAGTCTTTTATTCTCACCTA
AAGACAATAGAAAAAAGTGTTGAAAAAGAATTGGATCGACTTTAGGGTAG
TAAATTAAATAATAAAGCGCGACTACAGTCGAAAAGGTGTATTAAATGAG
GATTTTAAAATTCCCTCTATGCGTCACTTATTGCTTTTTAGTCTTGACTA
TTTTGAAACGTTTGGTGTCGTGATAGAATGTGAATGGGGTATTAAGTTGA
GGGGGGTTTTATCACAGTTGTTTGTTTACGCACTCGCATACACGGTAAAA
AGGTATTTATTAATCATCCATCCCTTAGATAGAAATTCATTTAGGATTGA
GTGCTCTTTAGATCAGAGTGGATTGTTCGATGAGTTGGTGTCATTTCTTA
AATTCTATATGGTCATATTTTTTACGGATTTTTTAGTAATAGAACATTTC
GAAAGATTATTTCATATGATGTAGACTCTCAAAACTTGCAACGGACTGAA
AAACAAAATAAAAGTTTAAAGGTTTTGTTTTTAAATAAGAGTGATATCGT
TTGCTTACTCATCAATTATAATTCACAATCTTTTTCACATTGGATTGACA
CGGATATGGGGCAATATTGGTTAGAAAGAGGAAATGAAAAATATGTTTTT
GCTTATATCAGCATAATATAACAATAGGCAGATACTGTCCAGAAATGAAA
TATGTATCTGATATGAAACGGGAACACTTATGTAAAAATAAAACCTTTAA
GAAGAGAGACCTGAAGTAGTTAAAATTTTACCTATACAGTTATAAATCTG
AGATATATATGTCCAAGTTAGAAAAAAATCAGATTGGTACTCGAAAGAGA
GAGTATGTCCAAAATTATACAGCTTCTTAGCTTGAATTCATTTATTCTCT
TTAGACTCCATCAACGGAAAGGCTCTTTGGTTTTTGCTGAATATCCTTCT
GGTAGTACAGAGACAGTTTAAAAATTTACAAGATTGAAGATAGATAGTCG
TTTAGTTTTAGAGAATTGACATTTCACTGGCGAGGATTTCAGTTGATTAA
AATCTATAACAGAGCAGAGACTATAAGACGTTAACCCATCAAGATCAAAT
TTAAGATAATATATTTTTACTAGTATATAAGCAAGCAAAAGAATAGGACA
AAGTTTAGTGTAGACTTTCTGATCAAGATGCAAGTCTTAAGCTTTACGTC
TTTGGTTTTTTGAAGGGTGCTGTTTGTTGGATAAAAATAGTTTTGTGGTG
ATTCATTTATATAAAAGACTCGTTGGGAAGTTCTCTATCAAATAGAATTG
CCTCCAGCTGACACCACGTCATTTTTATTTTACTTAAGAAACGTTATTTA
TGGACGCGTTATGGGCGTTGGTGGGTGTTATGGCGTTATTTTTTGAAAGA
ACAGGGATAGTTACTTCTACAAAGTTAAGTTTTCAGATGCGGACACCGTT
ACAAAATTGCACTGCAAGGCACCGATCAACAAAGTAACTATCGAATAACG
TTATAACAACGTTGTGTTCTAGCTGGGTAGACTACAGGTTGTTAGTTATT
GTTACATAAGTCAACGCGAGTTAAGCATCTATCATTTTCAAGAAGCTGCA
AGTCTCGTGTGTGTAGAGTTGTTTGTCGAAAGCTTAAAGCACAAATACCA
GTACTTAAAAGCTTAACGAAACATGTACAGAAACAAATATTATATCATCT
AGGATGGTGTCTGTTTTTTGCTTATTCGTGAAAGTTTTTTTGATACTTGC
TGGTGTAGGCTGTATTCTTACTGTTGCAAAATGAATCATGAAGGTCGAAA
CTAGACATCCTTAAAATCTTAGATGTTTAATTTTAAAGATGTTTTTTACG
TTAGATCGGCGTTCCTTCACGCAGATGGACGTTGCTTGCCTTAAATGGGT
GTTGTTCACGTAGATGGACGTTGCTTGCCTTATAAGTGGGTGTTGCTTAC
GTTATAAAGACGTTGATTGCGTTAAATGAGTGTCGCTTTATACGTTATAA
GGACGTTGCTTGCGTTAAATTGGCGCTGATTGCGTCATAAAGACGTATTG
GAAACGCTAGATATACGTTGTGGACTTTTTTACCAGCTGGGGCAATTGTT
TCTTACTACTCAAAGAAGGGCCACACAAGAGAGGACTTTTTAATTTTACT
GACCCAAGAATTTGAAATTTAAAGCTTTTACAAACTCGTGCTATTTTGGA
GTATTTTATTTCAGTTCTAGACTATTTTACTATGGATTTGAACATAGGTG
TTAATTCTGATTGATTTCGTAAGAATTTTTGGGACAGTATTGTTCAGTTT
CAATGGAGACTGAAACGCACAGGATGCACGAAGTTGACCTTTTTTTTACT
CTTACATAGTTTTATTTGACAGAGAAGTTGGTCCTGTCATTGAAAAACTG
TATCCAGTTGTTGGTGCTTTATAAGGATAAAGAGTATTGCACTAATTTAT
GTAGTAAGCTATAAACTCCCTTCAATCAGACCGGCCGATGGTGTTCGCAT
AACAGCAGAGCCTCCATAACTCGAACAGGAGTTTGTTCGAATTATGGAAA
CTTGGAGTTATGGAGATTGGTTTAAAAGACATTTTTCACTGAAGGGCTGG
TCCCATGTTTGAGTTTTAGTATAAGGAGACATTCGAGTTGTAGAGGTTAG
AGTTATGAAGAATCCACTGTATTTTGATCTCGAGTTAAGTTTAGCCTCGT
TTATCATTCAGGATTTCTTTACTGTTTATTATAAAACTTAGTAAATAATT
TTTTTGTTCTTAAATGTTGTCTAGCTTTTCTACTAATATGCTTATGCCAG
CAAGTTCAAATTCTTGTCAGCGTTTTTGGCTAACCATACTTCAAATATTG
ACTTTTTTTAATTATGCAAAGTCGCATGAATTATGACTCACAAAGAACAA
TATAAATTAGGATAAATTACATTCCACTTTGTTGACAATCCTCAGGAGAT
TCATGATGACGTCATCAGTGCTGTGAGCACAATTTTCTTAACAAACGTTA
ATGATTAAAACGGGAAAATGGATGAGTTCATTGATAAGATCATTAGACGA
TAATGACTCTTTGATTTTTCATAAGAATGGAGTAATCTGAAAGCAAAGAT
TAAAGCTCTAACAATAACTCTTGGTTCTCCATTTCTGGATAGTTTTTTTT
CACTTTCAAGTAATTTCTGAAAATAAATGGGATCAATGATGGAAACGCTG
ATGAAAAAGCCTTGATTTTTTTATGGACATTATGAATTTAAGAGCTAACT
TCTATATTATTCTTTCCAAAATATTCTTATAAAAAGTTTTAAAGTCATTA
ATAAGAACAACAATTGTCGAAATGATCATATGATGATGATGACGCAATGA
GTAGAGTTCAGAAGATAAATGGATGATAATTTTTATTGTGTGGAAAGTTT
GTACACACAATAATAAGATCAGTCTGGAGAGGTACGTGTGGTGTGATGTG
CTGGTATTGAAGTTAGTGATTCGTTGTTTGTGGTTTTTTTTTCGATTCGG
ATTAGATTATTTGTCTGCATTGAGGAAAACTACAGACAGAAGCGTTTGTT
AACCTACATATCCAACCTGTAAATTTTTTGCTATTTTGAGTTTCTGCCAT
TTACAGCTTGGTTTACACTGGGTTGGAAATATTTTACCTTTGTGCGATAA
TTTACAGCCTGGTCTACACTGGGTTGGAAATATTTTAGTTTTGTGCGATA
ATTTACAGCCTGGATATCGTTAAAATCTTAGAAAAACTTCTGCGTGTATT
TGCAGAAAACTCAGAGACACTAGAAGCTTATGAGTAAGGTTTTAATAGAA
AAGGAAACTTTTCTAACATAGTATGATACCATCAGTTAATCGTCAGTGGT
ACGATATGAACATTCGTAATTCTGTATAATTTCCTCGCCTTATATGGAAA
GTAAATTAGCAAGTCGCAATTAGTGGTGACAATTAAATCCTTTTGTTATC
AAACACAGGACAAATCAAAAGGTCGTTAAAAAGTTCAGCAACTGCAATTA
AACTTGGAATGATAATTTGTCCCTGACAAAAGTTTGTCCACATGTTTCAT
TTTATCAAAAAAGTGTGACGCAATGTTTGAAACAAATTCCAACGTAACCG
CATAGGGAATAGATCATTTAATTTTAGTATCAATCTATTTATAAAACAAG
ATACTCGTGTTAGNGTTATGAAGAATCCACTGTATTTTGATCTCGAGTTA
AGTTTAGCCTCGTTTATCATTCAGGATTTCTTTACTGTTTATTATAAAAC
TTAGTAAATAATTTTTTTGTTCTTAAATGTTGTCTAGCTTTTCTACTAAT
ATGCTTATGCCAGCAAGTTCAAATTCTTGTCAGCGTTTTTGGCTAACCAT
ACTTCAAATATTGACTTTTTTTAATTATGCAATGTCGCATGAATTATGAC
TCACAAAGAACAATATAAATTAGGATAAATTACATTCCACTTTGTTGACA
ATCCTCAGGAGATTCATGATGACGTCATCAGTGCTGTGAGCACAATTTTC
TTAACAAACGTTAATGATTAAAACGGGAAAATGGATGAGTTCATTGATAA
GATCATTAGACGATAATGACTCTTTGATTTTTCATAAGAATGGAGTAATC
TGAAAGCAAAGATTAAAGCTCTAACAATAACTCTTGGTTCTCCATTTCTG
GATAGTTTTTTTTCACTTTCAAGTAATTTCTGAAAATAAATGGGATCAAT
GATGGAAACGCTGATGAAAAAGCCTTGATTTCTTTATGGACATTATGAAT
TTAAGAGCTAACTTCTATATTATTCTTTCCAAAATATTCTTATAAAAAGT
TTTAAAGTCATTAATGAGAACAACAATTGTCGAAATGATCATATGATGAT
GATGACGCAATGAGTAGAGTTCAGAAGATAAATGGATGATAATTTTTATT
GTGTGGAAAGTTTGTACACACAATAATAAGATCAGTCTGGAGAGGTACGT
GTGGTGTGATGTGCTGGTATTGAAGTTAGTGATTCGTTGTTTGTGGTTTT
TTTTTCGATTCGGATTAGATTATTTGTCTGCATTGAGGAAAACTACAGAC
AGAAGCGTTTGTTAACCTACATATCCAACCTGTAAATTTTTTGCTATTTT
GAGTTTCTGCCATTTACAGCTTGGTCTACACTGGGTTGGAAATATTTTAC
CTTTGTGCGATAATTTACAGCCTGGTCTACACTGGGTTGGAAATATTTTA
GTTTTGTGCGATAATTTACAGCCTGGATATCGTTAAAATCTTAGAAAAAC
TTCTGCGTGTATTTGCAGAAAACTCAGAGACACTAGAAGCTTATGAGTAA
GGTTTTAATAGAAAAGGAAACTTTTCTAACATAGTATGATACCATCAGTT
AATCGTCAGTGGTACGATATGAACATTCGTAATTCTGTATAATTTCCTCG
CCTTATATGGAAAGTAAATTAGCAAGTCGCAATTAGTGGTGACAATTAAA
TCCTTTTGTTATCAAACACAGGACAAATCAAAAGGTCGTTAAAAAGTTCA
ACAACCATAATTAAACTTGGAATGATAATTTGTCCCTGACAAAAGTTTGT
CCACATGTTTCAATTTATCAAAAAAGTGTGACGCAATGTTTGAAACAAAT
TCCAACGTAACCGCATAGGGAATAGATCATTTAATGTTTAGTATCAATCT
ATTTATAAAACAAGATACTTGTGTCAATTAAAAGGACACTATTGTCCACA
CGAAAACACAAATTGCTGACCGATGTATAAAGATTACGAAAGTTTTTGAT
GTATGAGCTTTTTGTGTGGAAAGGAACTTTCTGATATCAGCCCACAAGTT
TATCGAGTGAAAGGAAAGTACAATTTGGTTTTGAATTACATAATTATGAT
TGTGGGCTGTTTTGTTCAAGAGGGTTGCCTCCTTCTTGAGAAATATTATT
CGGGTACACCATTTGTGTGCTTGATTCTGTGGGATTTTAATATTTGTTTT
GGGTTTGTGTTGTTAGTCATGAATATTTATGAATGATACTGTTTGTATGT
TATAAAATTGACTCTTCCAGCCTTGAAAGGTTGCATTGGCTATTCGTGTC
TCTTTTCAAGCGCTTAGGCTTCGTTTTAGAACACCCGACAACTGCGTTCT
GGATAGAAAGAAATTCAGTACAACACCTGACTTTTGCTTCGGGGCTTAGA
TGGCTAACCTGAGATCAGATTGTGAATGTTTTCTGCACACCAAGCTGGAG
CTCTAAAGGGATGTGTGAAAACAAACAATCTGACGAAAATGCAATCTCGA
AATCGTAATGACCGCGTTCGTCTAAAAGGACTAAGAACGACAACAAATTT
GCGTGATTGTTTTCACGAATAGGGCGCCGTACCAGTTTTTAACTTTCCGG
CGCACAACAAGATTCTTGTTGTAGAATTTTCCGCGTGAGGACTTTTTTCC
TCAGATGTATAATTTTCAAGCGCCAATAAGTGTTGATGGGTCCTTCTCTA
TATTTTTTAAATGTAATTCAATAAAAACTATAATCGTTTCAATCTTCTTT
TTCAGAATTTAATGAAAAAACAAGAAAAGAAAACAACACAATATAAAGAG
CATCGAAGACGAATCTGATTGGTTAATAATATTGACAAACATCTTAATGG
CACCCGACCATAACATCTCTACTATTCCATTACGATTACAAGCATTAAAT
GAAGACTTAGCTATGGCAGACACTCACACATTCCCTTTAAATGATTACGT
AGTGATCCATCAGTGCGATCCACCTTGTACCGATTGCGAATTCATTAAAG
TCTCAAATAAAGAAGCTCTGCAACTAAGCTTGAAAGAGGAGAAAAAGAAG
AACGAAAAATATAGAGAACGCTTAAATGATATTTTAAAGAAATACGGACA
GTCGTTACGTCAGATTGAATATCAAAAAGCAAGAATCGAAGTTTTGACGC
GACAATTGTCCGACGAACGTCGGGATGTAGGGAATATTAGCGACTTTAAA
TTGGTAGCAAAAGACGAATATACCGTCATCGAGCATTCTGACGACAGTCT
GACGGATGATGACTTGGTTTGTTTTAACAATAAAGTTAAACTTGAAATTT
TTACTGATTGAGACTTGCAAGTCTGGATGTGAAACCCGAAATGTGTGCCC
GAATCCCGTATCGGATATCGGATTTGAGAGATCGAATTTCAAGATTCGAA
CAAATAGCACACTGTTGCTGTAATAGTAAGAAAGAAAAGTGAAAATATTC
AATACGGCTCTACAGTATTACGAAACTTCAGGTATATATTCTATATTATC
AATCTCATCAAATATCGCTATCGGTGCATCAAAGACATAATACCCATCTT
TCGGAATTTTGTTTCATGATTTCTGGAGACACTTATTTTGCCGTGTATAT
CAATTTTAAGGCAAATTTTAACCCTGGTTGTATTCCAAGTTCGTGATAAT
TTTAGAACTATATCCATACTTTTCCCCTGTCGTTATCCCCCCCGTCCCCA
TCTTTGTGATTACCCTTTTAAATTTGGTACCATAACCCTCCCGAAAATGC
TTTAACAAGATATATAACTTATCTTAGAGAGCTATAGACCAATCTCTAAT
AGAATTTAACTTTTATTTAGTAATGTACATTGGTTTATAATTTTGAGGTG
TAAATAATAAAATTTGTTATGTATTTTATAGAAAAAAGTAATATCAATGA
AACCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065609-exon-scaffold_440-1575043694:479467..479496 | TCONS_00065609-exon-scaffold_440-1575043694:479467..479496 | Clytia hemisphaerica | exon |
| TCONS_00065609-exon-scaffold_440-1575043694:471289..472441 | TCONS_00065609-exon-scaffold_440-1575043694:471289..472441 | Clytia hemisphaerica | exon |
| TCONS_00065609-exon-scaffold_440-1510915933:479467..479496 | TCONS_00065609-exon-scaffold_440-1510915933:479467..479496 | Clytia hemisphaerica | exon |
| TCONS_00065609-exon-scaffold_440-1510915933:471289..472441 | TCONS_00065609-exon-scaffold_440-1510915933:471289..472441 | Clytia hemisphaerica | exon |
| TCONS_00065609-exon-scaffold_440-1491911889:479467..479496 | TCONS_00065609-exon-scaffold_440-1491911889:479467..479496 | Clytia hemisphaerica | exon |
| TCONS_00065609-exon-scaffold_440-1491911889:471289..472441 | TCONS_00065609-exon-scaffold_440-1491911889:471289..472441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:471289..479496 - |
Blast
The following BLAST results are available for this feature:
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