TCONS_00065624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065624
Unique NameTCONS_00065624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065624 ID=TCONS_00065624|Name=TCONS_00065624|organism=Clytia hemisphaerica|type=transcript|length=315bp
ACTACAATCAGTTCTGTAATATTTGGCAGTAAACAgtgattttcatgttt
tttgaaGTCAAACCCCTCCCCCCCAACTTCAATGGTTGGATTGGGCTCTC
TGGGGCTTATCAACCATTgaagttgggggggggggggagggggcttagaa
aattaaaacatagcTGAGGGGTTGTTTTGAGGCTTACTGCCAAAATATTA
CAGACTTTTGTTTACTATTTTCAACTCAGTTTTGAGCTAAGTTTGGTAAT
TTATGACAAGCCTATGTGTCTTTTGTTGGAAATATATTAGTTTAGAAAAC
TGGTTTGGGGGGAGC
Run BLAST on NCBI

transcript from alignment at scaffold_440:105730..106044

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065624 ID=TCONS_00065624|Name=TCONS_00065624|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at scaffold_440:105730..106044 (Clytia hemisphaerica)
GCTCCCCCCAAACCAGTTTTCTAAACTAATATATTTCCAACAAAAGACAC
ATAGGCTTGTCATAAATTACCAAACTTAGCTCAAAACTGAGTTGAAAATA
GTAAACAAAAGTCTGTAATATTTTGGCAGTAAGCCTCAAAACAACCCCTC
AgctatgttttaattttctaagccccctcccccccccccccaacttcAAT
GGTTGATAAGCCCCAGAGAGCCCAATCCAACCATTGAAGTTGGGGGGGAG
GGGTTTGACttcaaaaaacatgaaaatcacTGTTTACTGCCAAATATTAC
AGAACTGATTGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041112XLOC_041112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065624-exon-scaffold_440-1491911889:105730..106044TCONS_00065624-exon-scaffold_440-1491911889:105730..106044Clytia hemisphaericaexon
TCONS_00065624-exon-scaffold_440-1510915933:105730..106044TCONS_00065624-exon-scaffold_440-1510915933:105730..106044Clytia hemisphaericaexon
TCONS_00065624-exon-scaffold_440-1575043694:105730..106044TCONS_00065624-exon-scaffold_440-1575043694:105730..106044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:105730..106044 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334618	0	0.757743	1.48267	1.805	1.78292	2.58122	5.23577	1.1279	1.39709	0	0.668561	0.667631	0.693342	0.760028	1.01953	0.753589	1.28734	1.42282	1.48888	2.26469	1.89366	4.60399	3.48808	2.87411	4.80952	1.83531	2.93804	31.1976	14.3791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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