|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065630 ID=TCONS_00065630|Name=TCONS_00065630|organism=Clytia hemisphaerica|type=transcript|length=1073bp
TTTAGACATCCATGGAAGGCCATTGATCCAATtggaattttgagaaattt
cttCAATCTGCACACCTTTCCTTGTGCCAAGAACAATACGACTAGCTTCT
GGGAATTCATCTGATGACATCTCAGCAACTTTCCTCAGACCATACTCTGC
CTGGTTTCCGCTAGGCTTAACACCGTATATCAACGTTCTAATGACCTTTT
CCTCAGGTGGTTTGGAAGGATCAAGGCTGTCGTGCCACAAATATCTTTGA
AGACACCAATCTCTCTCATCCAGACAGATTGTGTTATACATTTTAGATAT
GTCAGTATGTAGTCCGACAGAATGGGTGGACCATCGAATAACGATTTCTT
GAAGCTTGTTCAATCCGTTTTTTCCCTTCGCGAGAATGTCGTTCAAACTT
GAACCGGATGGTGTGGGCATGGATGCGTCAAATACAATACGACAAGGGGT
TGAAAGTGAAGACGGTTTCCAAACAGCCCTCCACGGGATATAATTTTGAA
CTGGATTGCCTTTGAGGTCGGATTGAATGTGCTGGGGTAAATCTTTGATG
TAAGCTACGTAACCGAGCTTTTGCAGCTTTGCTTCCGATTCTAAAACATC
GGATTTATCTTTGGTGTTTTCGGGTTTGTTCAGCTTTCGGATTTGCTGTT
CATAGACTTTTAACGCAACCGGTTTGTTGGGTGCTAGCCGTTTGGCGGGG
TTGTATAGCACGGGTAAGCGGGCGGTAGTGATATGGGATTCAATATCGAT
TGAAACGGAAGATTCGATAAGGGCTTGTTCGGCCTCTTCCTTTAGACTGA
TTGATTCAATGGAATCATGAGTTTTGCAATCTTTGCATTCACGGCAAGAT
ACACAACGATAACTGATTTGGGAACCTGCATTCTCAGCATTTTCGAACGA
TTTGAGTGGATTTGCTTTGAATGAGGAATGAACAAAATCAGACTCTGACA
GAGCAGAAACCATCATGATATTGGACATACCACTGACGAATGATGGTGAA
GAAAAGTGAGATTGGAAGCGAATCTTGGAAAACGATTCGTGTGGACCACC
AATGATGCCAGTGGTTCCGTCGN Run BLAST on NCBI protein sequence of TCONS_00065630-protein >TCONS_00065630-protein ID=TCONS_00065630-protein|Name=TCONS_00065630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
DGTTGIIGGPHESFSKIRFQSHFSSPSFVSGMSNIMMVSALSESDFVHSS
FKANPLKSFENAENAGSQISYRCVSCRECKDCKTHDSIESISLKEEAEQA
LIESSVSIDIESHITTARLPVLYNPAKRLAPNKPVALKVYEQQIRKLNKP
ENTKDKSDVLESEAKLQKLGYVAYIKDLPQHIQSDLKGNPVQNYIPWRAV
WKPSSLSTPCRIVFDASMPTPSGSSLNDILAKGKNGLNKLQEIVIRWSTH
SVGLHTDISKMYNTICLDERDWCLQRYLWHDSLDPSKPPEEKVIRTLIYG
VKPSGNQAEYGLRKVAEMSSDEFPEASRIVLGTRKGVQIEEISQNSNWIN
GLPWMSK Run BLAST on NCBI transcript from alignment at scaffold_440:161137..162209 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065630 ID=TCONS_00065630|Name=TCONS_00065630|organism=Clytia hemisphaerica|type=transcript|length=1073bp|location=Sequence derived from alignment at scaffold_440:161137..162209 (Clytia hemisphaerica)
NCGACGGAACCACTGGCATCATTGGTGGTCCACACGAATCGTTTTCCAAG
ATTCGCTTCCAATCTCACTTTTCTTCACCATCATTCGTCAGTGGTATGTC
CAATATCATGATGGTTTCTGCTCTGTCAGAGTCTGATTTTGTTCATTCCT
CATTCAAAGCAAATCCACTCAAATCGTTCGAAAATGCTGAGAATGCAGGT
TCCCAAATCAGTTATCGTTGTGTATCTTGCCGTGAATGCAAAGATTGCAA
AACTCATGATTCCATTGAATCAATCAGTCTAAAGGAAGAGGCCGAACAAG
CCCTTATCGAATCTTCCGTTTCAATCGATATTGAATCCCATATCACTACC
GCCCGCTTACCCGTGCTATACAACCCCGCCAAACGGCTAGCACCCAACAA
ACCGGTTGCGTTAAAAGTCTATGAACAGCAAATCCGAAAGCTGAACAAAC
CCGAAAACACCAAAGATAAATCCGATGTTTTAGAATCGGAAGCAAAGCTG
CAAAAGCTCGGTTACGTAGCTTACATCAAAGATTTACCCCAGCACATTCA
ATCCGACCTCAAAGGCAATCCAGTTCAAAATTATATCCCGTGGAGGGCTG
TTTGGAAACCGTCTTCACTTTCAACCCCTTGTCGTATTGTATTTGACGCA
TCCATGCCCACACCATCCGGTTCAAGTTTGAACGACATTCTCGCGAAGGG
AAAAAACGGATTGAACAAGCTTCAAGAAATCGTTATTCGATGGTCCACCC
ATTCTGTCGGACTACATACTGACATATCTAAAATGTATAACACAATCTGT
CTGGATGAGAGAGATTGGTGTCTTCAAAGATATTTGTGGCACGACAGCCT
TGATCCTTCCAAACCACCTGAGGAAAAGGTCATTAGAACGTTGATATACG
GTGTTAAGCCTAGCGGAAACCAGGCAGAGTATGGTCTGAGGAAAGTTGCT
GAGATGTCATCAGATGAATTCCCAGAAGCTAGTCGTATTGTTCTTGGCAC
AAGGAAAGGTGTGCAGATTGaagaaatttctcaaaattccaATTGGATCA
ATGGCCTTCCATGGATGTCTAAA Coding sequence (CDS) from alignment at scaffold_440:161137..162209 >TCONS_00065630 ID=TCONS_00065630|Name=TCONS_00065630|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_440:161137..162209 (Clytia hemisphaerica)
GACGGAACCACTGGCATCATTGGTGGTCCACACGAATCGTTTTCCAAGAT
TCGCTTCCAATCTCACTTTTCTTCACCATCATTCGTCAGTGGTATGTCCA
ATATCATGATGGTTTCTGCTCTGTCAGAGTCTGATTTTGTTCATTCCTCA
TTCAAAGCAAATCCACTCAAATCGTTCGAAAATGCTGAGAATGCAGGTTC
CCAAATCAGTTATCGTTGTGTATCTTGCCGTGAATGCAAAGATTGCAAAA
CTCATGATTCCATTGAATCAATCAGTCTAAAGGAAGAGGCCGAACAAGCC
CTTATCGAATCTTCCGTTTCAATCGATATTGAATCCCATATCACTACCGC
CCGCTTACCCGTGCTATACAACCCCGCCAAACGGCTAGCACCCAACAAAC
CGGTTGCGTTAAAAGTCTATGAACAGCAAATCCGAAAGCTGAACAAACCC
GAAAACACCAAAGATAAATCCGATGTTTTAGAATCGGAAGCAAAGCTGCA
AAAGCTCGGTTACGTAGCTTACATCAAAGATTTACCCCAGCACATTCAAT
CCGACCTCAAAGGCAATCCAGTTCAAAATTATATCCCGTGGAGGGCTGTT
TGGAAACCGTCTTCACTTTCAACCCCTTGTCGTATTGTATTTGACGCATC
CATGCCCACACCATCCGGTTCAAGTTTGAACGACATTCTCGCGAAGGGAA
AAAACGGATTGAACAAGCTTCAAGAAATCGTTATTCGATGGTCCACCCAT
TCTGTCGGACTACATACTGACATATCTAAAATGTATAACACAATCTGTCT
GGATGAGAGAGATTGGTGTCTTCAAAGATATTTGTGGCACGACAGCCTTG
ATCCTTCCAAACCACCTGAGGAAAAGGTCATTAGAACGTTGATATACGGT
GTTAAGCCTAGCGGAAACCAGGCAGAGTATGGTCTGAGGAAAGTTGCTGA
GATGTCATCAGATGAATTCCCAGAAGCTAGTCGTATTGTTCTTGGCACAA
GGAAAGGTGTGCAGATTGaagaaatttctcaaaattccaATTGGATCAAT
GGCCTTCCATGGATGTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065630-exon-scaffold_440-1491911889:161137..162209 | TCONS_00065630-exon-scaffold_440-1491911889:161137..162209 | Clytia hemisphaerica | exon |
| TCONS_00065630-exon-scaffold_440-1510915933:161137..162209 | TCONS_00065630-exon-scaffold_440-1510915933:161137..162209 | Clytia hemisphaerica | exon |
| TCONS_00065630-exon-scaffold_440-1575043694:161137..162209 | TCONS_00065630-exon-scaffold_440-1575043694:161137..162209 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:161137..162209 . |
Blast
The following BLAST results are available for this feature:
|
