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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065632 ID=TCONS_00065632|Name=TCONS_00065632|organism=Clytia hemisphaerica|type=transcript|length=1336bp
GCCAATCGTcgtccaaaaattcaaaacctttTCGAGAAACGTTCAGCAGA
AATCTGCTTGTCGTCAAAATGTTCCTGTATTAGCTCTCAGTGCCACAATT
GATTTAGACCTTCAGAGCCTTGTGAAGAGTAGCTGTAATTTGTCCAAGTC
TGTAAAGATTATTTCAACGTGCAGCAACAGAGACAATATTTTCCTTGGAG
TTAAAAAGGTACCAAAACAAGAAAACATTGAGTGTCTTCAATGGATTGTC
AATCTTTTATCTGTGAAAGGGTTCGACACTCCAAAAATCGTTGTCTTTTG
TCGTTCAGTTGATACTGCTGGCTTGGTGTACAATGAACTGAAGAGATTCT
TGTCAAAAAGGAATTCCGAAATTGACCCAAAGGAATTAATTGGTATCTTC
CATTCAAACACAAAGCCCAAAAAGAAGGAAGTAGTAATGACAACCTTGAC
AACATTGGATTGTCCGATGCGTGTTGTTGTGGCTACAAGCAGCTTGGGAT
GTGGCATTAATATGAAAAACGTCAAATATATTGTTCACTTTGGTTTGGCT
TACCATTTGGTCGACTACTGTCAACAGATTGGTTGAGCTGGGAGAGGAAA
AACTTCAATCTCACACGCTATCCTGTACAATTTTCCCCAAGGAGGTACAA
CTATCAGTAGGTCAATGAGAAAGTACTCCTTAAAAGCAAATGAAAGTTGT
CTACGAACAGTACTTTTCACACCGTTTAATGACAATAATGAACAAGTAAG
CCCAAAACAGCCAAGTCATTTGTGTTGCACTTTTTGTGCCACTAATTGTT
AATGTGGAGAACCATGTTGTGAAGGTCTCAAAGTACCAGATGTTATGGAT
TGCGAGTCCTCtgaaccaaaatttcctgttcGAAACGTGACCCCAGATGA
TAAAAAGCTTATTCGAAATCTTCTTATTGAGTCTCACGAAAGTCAGTGTT
CTTTTCTACCACTTCTGACTCCACCTGAATTAGTTACTGGTTTGAATGAG
CAAATCATCTCTAAAGTTGTTGAAAATCTTGAATATATTGATTCAGTAGA
TTACATTCTTAAAAATTTACACGTGATTAATCTCAAATGTGCTCGAGAAA
TTGCTGTTATTGTCAAAGAAGtttttattgatgttgatgatgATGAGAAA
GTATTTTCAGACTTGAAATTTGATGATGGGCACACTGAATTGTTGAATTC
TAGTCGTGGGCCAATTATGTTTGATGAATATTCAGACTTTTCTGCAAGCT
CAGAAGGGGAAAGTTTGGATGATAGTAATAGTGACTATGACtaaataata
taatatacatttttgtacttttttaaatttttttgt Run BLAST on NCBI protein sequence of TCONS_00065632-protein >TCONS_00065632-protein ID=TCONS_00065632-protein|Name=TCONS_00065632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
PIVVQKFKTFSRNVQQKSACRQNVPVLALSATIDLDLQSLVKSSCNLSKS
VKIISTCSNRDNIFLGVKKVPKQENIECLQWIVNLLSVKGFDTPKIVVFC
RSVDTAGLVYNELKRFLSKRNSEIDPKELIGIFHSNTKPKKKEVVMTTLT
TLDCPMRVVVATSSLGCGINMKNVKYIVHFGLAYHLVDYCQQIG Run BLAST on NCBI transcript from alignment at scaffold_440:177842..179177 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065632 ID=TCONS_00065632|Name=TCONS_00065632|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at scaffold_440:177842..179177 (Clytia hemisphaerica)
acaaaaaaatttaaaaaagtacaaaaatgtatattatattatttaGTCAT
AGTCACTATTACTATCATCCAAACTTTCCCCTTCTGAGCTTGCAGAAAAG
TCTGAATATTCATCAAACATAATTGGCCCACGACTAGAATTCAACAATTC
AGTGTGCCCATCATCAAATTTCAAGTCTGAAAATACTTTCTCATcatcat
caacatcaataaaaaCTTCTTTGACAATAACAGCAATTTCTCGAGCACAT
TTGAGATTAATCACGTGTAAATTTTTAAGAATGTAATCTACTGAATCAAT
ATATTCAAGATTTTCAACAACTTTAGAGATGATTTGCTCATTCAAACCAG
TAACTAATTCAGGTGGAGTCAGAAGTGGTAGAAAAGAACACTGACTTTCG
TGAGACTCAATAAGAAGATTTCGAATAAGCTTTTTATCATCTGGGGTCAC
GTTTCgaacaggaaattttggttcaGAGGACTCGCAATCCATAACATCTG
GTACTTTGAGACCTTCACAACATGGTTCTCCACATTAACAATTAGTGGCA
CAAAAAGTGCAACACAAATGACTTGGCTGTTTTGGGCTTACTTGTTCATT
ATTGTCATTAAACGGTGTGAAAAGTACTGTTCGTAGACAACTTTCATTTG
CTTTTAAGGAGTACTTTCTCATTGACCTACTGATAGTTGTACCTCCTTGG
GGAAAATTGTACAGGATAGCGTGTGAGATTGAAGTTTTTCCTCTCCCAGC
TCAACCAATCTGTTGACAGTAGTCGACCAAATGGTAAGCCAAACCAAAGT
GAACAATATATTTGACGTTTTTCATATTAATGCCACATCCCAAGCTGCTT
GTAGCCACAACAACACGCATCGGACAATCCAATGTTGTCAAGGTTGTCAT
TACTACTTCCTTCTTTTTGGGCTTTGTGTTTGAATGGAAGATACCAATTA
ATTCCTTTGGGTCAATTTCGGAATTCCTTTTTGACAAGAATCTCTTCAGT
TCATTGTACACCAAGCCAGCAGTATCAACTGAACGACAAAAGACAACGAT
TTTTGGAGTGTCGAACCCTTTCACAGATAAAAGATTGACAATCCATTGAA
GACACTCAATGTTTTCTTGTTTTGGTACCTTTTTAACTCCAAGGAAAATA
TTGTCTCTGTTGCTGCACGTTGAAATAATCTTTACAGACTTGGACAAATT
ACAGCTACTCTTCACAAGGCTCTGAAGGTCTAAATCAATTGTGGCACTGA
GAGCTAATACAGGAACATTTTGACGACAAGCAGATTTCTGCTGAACGTTT
CTCGAaaaggttttgaatttttggacgACGATTGGC Coding sequence (CDS) from alignment at scaffold_440:177842..179177 >TCONS_00065632 ID=TCONS_00065632|Name=TCONS_00065632|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_440:177842..179177 (Clytia hemisphaerica)
TCAACCAATCTGTTGACAGTAGTCGACCAAATGGTAAGCCAAACCAAAGT
GAACAATATATTTGACGTTTTTCATATTAATGCCACATCCCAAGCTGCTT
GTAGCCACAACAACACGCATCGGACAATCCAATGTTGTCAAGGTTGTCAT
TACTACTTCCTTCTTTTTGGGCTTTGTGTTTGAATGGAAGATACCAATTA
ATTCCTTTGGGTCAATTTCGGAATTCCTTTTTGACAAGAATCTCTTCAGT
TCATTGTACACCAAGCCAGCAGTATCAACTGAACGACAAAAGACAACGAT
TTTTGGAGTGTCGAACCCTTTCACAGATAAAAGATTGACAATCCATTGAA
GACACTCAATGTTTTCTTGTTTTGGTACCTTTTTAACTCCAAGGAAAATA
TTGTCTCTGTTGCTGCACGTTGAAATAATCTTTACAGACTTGGACAAATT
ACAGCTACTCTTCACAAGGCTCTGAAGGTCTAAATCAATTGTGGCACTGA
GAGCTAATACAGGAACATTTTGACGACAAGCAGATTTCTGCTGAACGTTT
CTCGAaaaggttttgaatttttggacgACGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065632-exon-scaffold_440-1491911889:177842..179177 | TCONS_00065632-exon-scaffold_440-1491911889:177842..179177 | Clytia hemisphaerica | exon |
| TCONS_00065632-exon-scaffold_440-1510915933:177842..179177 | TCONS_00065632-exon-scaffold_440-1510915933:177842..179177 | Clytia hemisphaerica | exon |
| TCONS_00065632-exon-scaffold_440-1575043694:177842..179177 | TCONS_00065632-exon-scaffold_440-1575043694:177842..179177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:177842..179177 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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