TCONS_00065642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065642
Unique NameTCONS_00065642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065642 ID=TCONS_00065642|Name=TCONS_00065642|organism=Clytia hemisphaerica|type=transcript|length=271bp
CAATGTTTGAAACAAATTCCAACGTAACCGCATAGGGAATAGATCATTTA
ATGTTTAGTATCAATCTATTTATAAAACAAGATACTTGTGTCAATTAAAA
GGACACTATTGTCCACACGAAAACACAAATTGCTGACCGATGTATAAAGA
TTACGAAAGTTTTTGATGTATGAGCTTTTTGTGTGGAAAGGAACTTTCTG
ATATCAGCCCACAAGTTTATCGAGTGAAAGGAAAGTACAATTTGGTTTTG
AATTACATAATTATGATTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_440:473093..473363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065642 ID=TCONS_00065642|Name=TCONS_00065642|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at scaffold_440:473093..473363 (Clytia hemisphaerica)
CACAATCATAATTATGTAATTCAAAACCAAATTGTACTTTCCTTTCACTC
GATAAACTTGTGGGCTGATATCAGAAAGTTCCTTTCCACACAAAAAGCTC
ATACATCAAAAACTTTCGTAATCTTTATACATCGGTCAGCAATTTGTGTT
TTCGTGTGGACAATAGTGTCCTTTTAATTGACACAAGTATCTTGTTTTAT
AAATAGATTGATACTAAACATTAAATGATCTATTCCCTATGCGGTTACGT
TGGAATTTGTTTCAAACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041130XLOC_041130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065642-exon-scaffold_440-1491911889:473093..473363TCONS_00065642-exon-scaffold_440-1491911889:473093..473363Clytia hemisphaericaexon
TCONS_00065642-exon-scaffold_440-1510915933:473093..473363TCONS_00065642-exon-scaffold_440-1510915933:473093..473363Clytia hemisphaericaexon
TCONS_00065642-exon-scaffold_440-1575043694:473093..473363TCONS_00065642-exon-scaffold_440-1575043694:473093..473363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:473093..473363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.544879	0	0	2.26056	0.595441	0.718374	2.0176	0.941713	4.08262	1.1322	0	0.371614	0	0	0	0	0	0	0.621551	2.16096	0	0	0	0.599916	0	3.83086	4.08839	0.62018	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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