TCONS_00065643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065643
Unique NameTCONS_00065643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065643 ID=TCONS_00065643|Name=TCONS_00065643|organism=Clytia hemisphaerica|type=transcript|length=861bp
TGATAATCAGGTCATATCAGTATTAATTGGTAGTGTGATTCTATTTGGGG
AtttcttatagaaaattttgagttccATTGTGTTTTTTAGTTTAATTAGC
ACTGCATATCAATTCAAAGACGTTAGTTCTGAACAGGCTATGGTCTGATA
AAGATTTCGATTCCAAAGACTAACTATCACTtacgaaagaagaaaaaaaa
gaagctaGCAAGTGAACGTGAAAAATATCACTTTTTCAAATTCGAAACTT
TTTggggattttgagaaaaatcttctttttggtGGTGCCTTACTTAATTA
GAGGAAGGTTTCGTCTGTTTAACAGGGGGACAGAtaagtgaagaaaattt
tgaaaaatgtcttcATTCACTTTCTTCGTTGTATTGTTGTTAACATTGGT
GGCAGCTTGTCATAGTATGGATTTCTGTGTAGAAGATGCTGATTATAATT
GTAGACGACAATCGAAAGATCACCAGTATTTCAAAACATGTGTTGAAAAT
TATATGAAAGATGTATGCAGTACACGATTACATAACCGAAGTCCTGGAGA
TTGTCGAAACACCAAAGTGGTGGATGAGTATCGTGTTCAGAGGTTTTGTT
ATGGTTCGTGCTTCACTGTCAGATATTTAGTCAAAGTTGTTGTTTGTGCT
TAATGAAGACTATGAACTGAAACTTGATCATTTTTGGAGGCAAATGTAAA
CAAGACGATACCACCAGTTTGTTGTTGTTTAAAAGTATACACGAAATCTT
AATTACCTAAAATTatagtaaaatttctttgtcgTATTATCTTCTATGTA
TTGTAACGTAATGTAttggtccgaaaaaaaaatcaacaatttcTGAAATT
AAGAAAAAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_440:526088..526948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065643 ID=TCONS_00065643|Name=TCONS_00065643|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at scaffold_440:526088..526948 (Clytia hemisphaerica)
ATCTTTTTCTTAATTTCAgaaattgttgatttttttttcggaccaaTACA
TTACGTTACAATACATAGAAGATAATAcgacaaagaaattttactatAAT
TTTAGGTAATTAAGATTTCGTGTATACTTTTAAACAACAACAAACTGGTG
GTATCGTCTTGTTTACATTTGCCTCCAAAAATGATCAAGTTTCAGTTCAT
AGTCTTCATTAAGCACAAACAACAACTTTGACTAAATATCTGACAGTGAA
GCACGAACCATAACAAAACCTCTGAACACGATACTCATCCACCACTTTGG
TGTTTCGACAATCTCCAGGACTTCGGTTATGTAATCGTGTACTGCATACA
TCTTTCATATAATTTTCAACACATGTTTTGAAATACTGGTGATCTTTCGA
TTGTCGTCTACAATTATAATCAGCATCTTCTACACAGAAATCCATACTAT
GACAAGCTGCCACCAATGTTAACAACAATACAACGAAGAAAGTGAATgaa
gacatttttcaaaattttcttcacttaTCTGTCCCCCTGTTAAACAGACG
AAACCTTCCTCTAATTAAGTAAGGCACCaccaaaaagaagatttttctca
aaatccccAAAAAGTTTCGAATTTGAAAAAGTGATATTTTTCACGTTCAC
TTGCtagcttcttttttttcttctttcgtaAGTGATAGTTAGTCTTTGGA
ATCGAAATCTTTATCAGACCATAGCCTGTTCAGAACTAACGTCTTTGAAT
TGATATGCAGTGCTAATTAAACTAAAAAACACAATggaactcaaaatttt
ctataagaaaTCCCCAAATAGAATCACACTACCAATTAATACTGATATGA
CCTGATTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041131XLOC_041131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065643-exon-scaffold_440-1491911889:526088..526948TCONS_00065643-exon-scaffold_440-1491911889:526088..526948Clytia hemisphaericaexon
TCONS_00065643-exon-scaffold_440-1510915933:526088..526948TCONS_00065643-exon-scaffold_440-1510915933:526088..526948Clytia hemisphaericaexon
TCONS_00065643-exon-scaffold_440-1575043694:526088..526948TCONS_00065643-exon-scaffold_440-1575043694:526088..526948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:526088..526948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108827	0	0	0	0	0.0579858	0.349787	0.130987	0.366827	0.397578	0	0.217435	13.8603	9.35804	0	0	0.735267	0.628021	67.2135	70.0315	1.99919	2.30953	1.68452	2.38229	1.3437	1.61634	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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