TCONS_00065647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065647
Unique NameTCONS_00065647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065647 ID=TCONS_00065647|Name=TCONS_00065647|organism=Clytia hemisphaerica|type=transcript|length=595bp
cccaggtctagcgcaaatagaaaaggggatagactccctcactcccggct
ccgccgacagccaccagatgaatatacttttTACTACCTAAAAACTtagt
ttaaaattaaaaaatccttGATAAGAATAATATCTACGAGCACCTCCTGC
GATGAATAAATAacacttaaattaatgtaaattcAACCTCATATTTAAGA
CCACCGTTACCAGACAATCTTGATAGTGCAATGGTACACAAATAACGCAT
GGAGTTTGGTCTTGCTATCCCTTTACATTCTCCATCATTCATAggtttca
tattttcaaaatcggTGAAAACAATTTTCACATCGTAAGTTCTATCCGAA
GAGTAATTGATCAACTCAAACGTCGTTGATCGGTGATCATTTAAAACCCC
CGTCTTTTCCTTTTTATTCTCGTAAACGATTCGTCTCAACAGTCCAATAT
GGTTTTCATCAATATGTGTGATCTCCTCCCTCAGATAGAATTTATCGTTT
TGGATACGGTAGATGTAGTCAGTCCGAACTGGATACAAATCCaacatttt
cattaatttcgGAGATGATTTTAATCTTTTACCGTTTTTGCCAAG
Run BLAST on NCBI

protein sequence of TCONS_00065647-protein

>TCONS_00065647-protein ID=TCONS_00065647-protein|Name=TCONS_00065647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
LGKNGKRLKSSPKLMKMLDLYPVRTDYIYRIQNDKFYLREEITHIDENHI
GLLRRIVYENKKEKTGVLNDHRSTTFELINYSSDRTYDVKIVFTDFENMK
PMNDGECKGIARPNSMRYLCTIALSRLSGNGGLKYEVEFTLI
Run BLAST on NCBI

transcript from alignment at scaffold_440:620652..621246

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065647 ID=TCONS_00065647|Name=TCONS_00065647|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at scaffold_440:620652..621246 (Clytia hemisphaerica)
CTTGGCAAAAACGGTAAAAGATTAAAATCATCTCcgaaattaatgaaaat
gttGGATTTGTATCCAGTTCGGACTGACTACATCTACCGTATCCAAAACG
ATAAATTCTATCTGAGGGAGGAGATCACACATATTGATGAAAACCATATT
GGACTGTTGAGACGAATCGTTTACGAGAATAAAAAGGAAAAGACGGGGGT
TTTAAATGATCACCGATCAACGACGTTTGAGTTGATCAATTACTCTTCGG
ATAGAACTTACGATGTGAAAATTGTTTTCAccgattttgaaaatatgaaa
ccTATGAATGATGGAGAATGTAAAGGGATAGCAAGACCAAACTCCATGCG
TTATTTGTGTACCATTGCACTATCAAGATTGTCTGGTAACGGTGGTCTTA
AATATGAGGTTgaatttacattaatttaagtgtTATTTATTCATCGCAGG
AGGTGCTCGTAGATATTATTCTTATCaaggattttttaattttaaactaA
GTTTTTAGGTAGTAaaaagtatattcatctggtggctgtcggcggagccg
ggagtgagggagtctatccccttttctatttgcgctagacctggg

Coding sequence (CDS) from alignment at scaffold_440:620652..621246

>TCONS_00065647 ID=TCONS_00065647|Name=TCONS_00065647|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_440:620652..621246 (Clytia hemisphaerica)
CTTGGCAAAAACGGTAAAAGATTAAAATCATCTCcgaaattaatgaaaat
gttGGATTTGTATCCAGTTCGGACTGACTACATCTACCGTATCCAAAACG
ATAAATTCTATCTGAGGGAGGAGATCACACATATTGATGAAAACCATATT
GGACTGTTGAGACGAATCGTTTACGAGAATAAAAAGGAAAAGACGGGGGT
TTTAAATGATCACCGATCAACGACGTTTGAGTTGATCAATTACTCTTCGG
ATAGAACTTACGATGTGAAAATTGTTTTCAccgattttgaaaatatgaaa
ccTATGAATGATGGAGAATGTAAAGGGATAGCAAGACCAAACTCCATGCG
TTATTTGTGTACCATTGCACTATCAAGATTGTCTGGTAACGGTGGTCTTA
AATATGAGGTTgaatttacattaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041135XLOC_041135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065647-exon-scaffold_440-1491911889:620652..621246TCONS_00065647-exon-scaffold_440-1491911889:620652..621246Clytia hemisphaericaexon
TCONS_00065647-exon-scaffold_440-1510915933:620652..621246TCONS_00065647-exon-scaffold_440-1510915933:620652..621246Clytia hemisphaericaexon
TCONS_00065647-exon-scaffold_440-1575043694:620652..621246TCONS_00065647-exon-scaffold_440-1575043694:620652..621246Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065647-proteinTCONS_00065647-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:620652..621246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19639	0.189076	0.119364	0	0	0.969263	1.70782	1.19177	0.555811	1.28494	1.34045	0.204639	0.313948	0.279545	0	0.21081	0.144339	1.1272	0.935957	0.183393	0	0.294567	0.235232	0.701892	0.222016	0	0.273974	0.104847	0.106235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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