TCONS_00065672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065672
Unique NameTCONS_00065672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065672 ID=TCONS_00065672|Name=TCONS_00065672|organism=Clytia hemisphaerica|type=transcript|length=1612bp
gtggAAAAGCAGCTTCAAGAGAACAGCATTCAAGGTTTCGTCAATGCTGG
CCACGGAGAAGAGGAATTTTCGAAGTTGCGACAAGAGAATAGTTACTTGC
GATCGAAACTACGAAAATCAGAACAAGAACTGGACGAGGTGAAAACATCA
AACATCGCTTTTAAAGAAGAAAGAGAACGTCTTAAAAAGAAGACTCGATC
AATCCAAGAAAGTGCAGACTCGTTGGACCAAAAATCATCTTCAGACACTC
AATCCTCACCACACCATGGCCATCGCCGTTCCCATTCTACTCACATCGAC
CGGTCGCAATCCCCTGTCGCTCATCAACGCTCCTCTAGCGTGGCGGCCGA
TCGCTCAACTATGCCCGCGCATCGTTCGAACAGTATGACTTCAGGCTCTC
CTACGCTACACAAACGTTCACATTCAGAAGCGAGAAGTTCACCCAACAGC
AGTTTAGGGCGGCTTCCAACTCAATCGTCCTCTTCAGTTTTTGCTATGGT
CAACAATAAAGgCTACACGGTGAGTCCGGAGAATTCTCTACGCagacaac
aacaacagcagatGGATTCCAGTGATTTGGGATCCTCCATCGGTGACGAA
TCACAAAGAAACGTCCTCAATCAAGCACTGGTACGCAATGTGCGAGGGAA
GATTCCAGAAGAATTATTACAAACACTGATGGCTTACACTTCAGTTGATC
CCATCTTGAAACACTTGGCCAATCATTTTGTCGCCGAAATCGAAGAGAGA
ACTAAAGAAGgTTTGATAAACGTAGAGCGTCTGGAGAGTAAACTATCGCA
CTTGCAAGCACAAAAAAACTTAATCCATCTCAGCTTACAGGAAAGCAAAC
AAAATGCTGAAAACCTGAGTTTGCTGTGTGGGAAATACGAATCGAACAGC
ACAGCGTGGTCTTTAGCTCTACAGAACACTGAGGAACTGCTCGAAACTTA
CGAAGTCATGTTACAGTTGCAAGAGTCGGAAGCCGATATTTTCTCGCGTA
ATTGCCAAGCGATCGGAGTAGTCGGTAATTTCGATACGATTAAATCGATG
ACATCGACGAAATCTTCTCAATCGAACATTTCGATCGCATCATCGAGCTC
ACATATCGGGTTTGAAGATGAAGACATTTTGAAAAGTTATCATAGTAAAC
GGAAAGATTTGGAAACGCAagccaaaaatattttattacaactcGATAAA
AAATACGATAATGCTTCACAAAACCCCTCGATTGCTGACCACGATGAACT
AAGCTACAAAAGTCGTACGAGTACGGGTAGCTCGATGAACTCGACATGTA
CCGATACTTTATCGAAAGACGAGGAGCATCGATTACGCGATTATATAAAA
CGATTAAAATCGGAACGGAACACGTATAAAGCGACGGTAAACGAAAAACT
GGAGTCGGTGAACGAATATTTTGATCCACCTCAAAACACAAGTGGTCTTC
CGTCGACAGACCGTTCAGAAAAACGTAATTTTAACATGAACCTGGAAATG
GCAGTCATCTTAGAAGATATGGAGGCATTGAAGGAAGAACGTGCTGAACT
CAAACACAATATTTATCTTCTGGAGAAGGAGAAACGAGCTCTTGAACTGA
AAATGAATGCAN
Run BLAST on NCBI

transcript from alignment at scaffold_442:160473..166854+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065672 ID=TCONS_00065672|Name=TCONS_00065672|organism=Clytia hemisphaerica|type=transcript|length=6382bp|location=Sequence derived from alignment at scaffold_442:160473..166854+ (Clytia hemisphaerica)
gtggAAAAGCAGCTTCAAGAGAACAGCATTCAAGGTTTCGTCAATGCTGG
CCACGGAGAAGAGGTATGTGATACTACTAATCTCATTTTTCTTTAACCTT
CATTTGAAATAGACCATTTTCCGAAAAAGGATTCGAATCGGGTTATCGAT
CTTTAACTACTTACAGTCTGAGTCTGTGTGTTTTGAGACTGAATGTTACA
TGGTGGATGGTATTACATTGTGAAGTAACCAGGCTGATCTCAAACACATA
TACGAAGAGGCTTTATATGTCATTTTCATAAATAGATTACACTGTAATAG
AAAGGGATTTATCTTTGAGGGTGAGATTTGGAGAGAGAGGCAATCGACGT
aaaccaaaataaataaacCTTGCTCTTGTGTTGTATAAGTGTCGTGTTGT
TTTCTCATGATCAGAAAATCCCTTATTTCTAATCTTGACTTCCTTCCTCG
CGTGAGCTTTTAAAACAGCAAATTCTTTGGATGACTTTCTAATCTTTTGT
AAAATAGTTATTATGTAAATGAAGAGGGTACAAAAATTCTCCCATNATTG
TCTCCCTTCTACAACCATTCAAATTCACTCACTTCGATATTCGAGTTACG
GAATAGAAGTTGACTTATTGAAACTAAACGATCTATTTTGTATTAAAATT
TACCTAGTTTGTAATAGATTAAATAAATAGTTTTGATATAGAAATGTCGG
TAAAGAGCTATGTGCCATTTTAATTTGGCTAAACAATGATTGCTACAATC
Agttccaaaatacttggcacaaaagggaaatttcccacgaaattttataa
ccacGAACAATTttgaagcgctctaaattaggttggaagggtagtcttaa
atctgagttttaacgctagacttaagacttggaAGACCTtgggatctgag
gatccaaaagttcaaaaatggtccagtagaataaatccctcccagatcga
aatattcgataaaatcaagttgaaggcccaaaattgacattctcgctcga
acttttcgaaaagtggtaaaatagccaaaattgccaatatgttatggcac
taaTTGTAGTTTCTAAAGcagtgaaattttctttttgttttaaaggaaTT
CGTGAATCCGTCCTCGTTGCTCAGCCCAGACTCCATGATGAGCGGTGGAC
CACAAATCACGGAGATGCTGAAGCAAATCGACAACCTTCGCAAAGAGAAA
CGAGATTGTAAGTTTTATTATCCACCATAAGAATGATTAGATTCGTCTCT
CACCCCTTTTATACACGTGTCTTTTTACTTAACTAATACCCTAACGGCTA
TTAAGTGGNCACTGTAATAGAAAGGGATTTATCTTTGAGGGTGAGATTTG
GAGAGAGAGGCAATCGACGTaaaccaaaataaataaacCTTGCTCTTGTG
TTGTATAAGTGTCGTGTTGTTTTCTCATAATCAGAAAATCCCTTATTTCT
AATCTTGACTTCCTTCCTCGCGTGAGCTTTTAAAACAGCAAATTCTATGG
ATGACTTTCTAATCTTTTGTAAAATAGTTATTATGTAAATGAAGAGGGTA
CAAAAATTCTCCCATTAACTATTTTATCCCTTTTAACCTTGTTAACATCG
GTGATGTATTTGTTCCCATTTCGAATCGACAAATCACGCTCTGTTTATAT
TTTGGCAGCAACTGACGAAGGCttaaatatgtttttgaatACTTTGATTG
TGCACAATCGTGATTTGGTTCAATACTATATCAAGGATCAGTTTTGATTC
AAGAATGGTGCCACAAAAATGAATCCTATATTCTGACTTGTTTCAACTTG
TTTCATATAGTATCGCTATTGGTGTCAGCGAAAATCCTAACTTCTGATTT
TCACTTTACAGGACAAAAGATAGAGATAGCCCATGAAAAACTATTTCTTA
GTCTGTCTTCCTTCAAATCTAAAGACGACATCATCGCAgctatgaaattg
aaaaatatttaaaaagatatCATGGGAAATTCTCACGGTATCTCACGCTC
AGACGCACAGTTGACCTTTTGTTGTGCATTCTTCAATCTCCTTTACATAT
CAACAACATTGCTAATCCTTTCTGGTATTCTCCTTTCGTGTTTGTTATTG
TTTACTTAATGACTGATATCTTTATATCCGTATACCTGAGAcatcaattt
tcttcttttcattttgCCTCCTTTCATTTGACATGATTATCTTGTTTTCT
TTGTACGAGTGTGTCCAATGGATTGGTTGGCAAACCCTCTTTTTGTCTCT
TTACTTAGTTCATTCTTTCCTTGTTGTTCATCACTTTTAGAAGCACATAT
TTTCATGGACACAGTTGACAATCCTCTTTCTGTCACTTACTTTTTACTCT
TAGTGAAGTAAGGGTTTTATCATAAACCAAATTAATATCACCTGTTATTT
TACTGgagttgttttttcattttggtcaGAACTGTTGttgataaatacaa
attaattGGCATTGATCATTCTATGGTTTTCATTTAATTTAATCGTCGGT
GTGAGAATTGAACATCGTAACATTTGGAAGATTTGAGCCTCACTTGACGT
AAAGGTTACAATATGTTATCGCTCTTTTGTGGAGCATCAAAATCtcgaag
aaagaagaagaactcGTTTTCCGAGTACTCTTCAAGCAGTGGAAGCAGTT
GTTACCATTCCGCTTTAGATTCTTATGGTCAAGCTATCTCCAATTCGGCT
CTTTCCGGCCATTTGGCTCTATCGGCCCGACAATCGATAACCGATGTCAA
CGAGAATCGAATCGTTCGAGCTGAATCGAGTTTATCGAATTTCTATAGTG
ATGAGTGTGGATCTTCTTCGAATTTGAGCGTTATCGAGAGGATCAACAAA
CTAACGAATCCTCGTCCCAAATCGATGATGTCATCAACAAAGAATTCAAA
TGCTAGCGATGAAAAATGTCCCTTGAAACGATCTCATTCGGTTAGGTTCA
AAACAGAGAAACCATTGAGTTTTATCGAGGATGATGACGAAGGATCTACC
ATgaacatttttgagaaattactTTTGATCGGTGAAACACGAGATACACC
GGAAACGAAATGTAAACTACGCCGAACTCGATCCGGTGTGTCTACTCGCT
CTACGAGACGTAATTTCGGATCGACAACTAATTTAAGCGCTGTTGAAAAA
CTCTCTGTAAGTTCTGGTTATGGAAGTAGAAATGATCTATTTGTCACAAT
TGAAGATTCTCTAAAAACTTTACCTATGCAGGTTTTGACAAAGCCGTCAT
GGAAGAGAAGGATATACCgttaaatcaaagaaatttagtTTAGGTTTAGA
AAAAATCGTCAATTCTAACCTCCAAACTCTTCCATTTCTTTCTGTAGGAA
TTTTCGAAGTTGCGACAAGAGAATAGTTACTTGCGATCGAAACTACGAAA
ATCAGAACAAGAACTGGACGAGGTGAAAACATCAAACATCGCTTTTAAAG
AAGAAAGAGAACGTCTTAAAAAGAAGGTGAAATATTATCATGatcataat
tttcttttgatctCTGGACAGTGACACTATCTTCAGATTTAACTGATATG
AGCGTTTTTTGAGTGCCCTTAAGGGAACAATTCTTTGTGTCGGtatcatt
tttcaacttttccacTCTTTGTCACAAAGTGATGAAAAGTTACCCTAAAA
AGATTCCATAATATCAATGTTGTTATTCAAAATCTATTTTTACAATCAGT
AACAATAATTCAATCATATCTCTTACAGACTCGATCAATCCAAGAAAGTG
CAGACTCGTTGGACCAAAAATCATCTTCAGACACTCAATCCTCACCACAC
CATGGCCATCGCCGTTCCCATTCTACTCACATCGACCGGTCGCAATCCCC
TGTCGCTCATCAACGCTCCTCTAGCGTGGCGGCCGATCGCTCAACTATGC
CCGCGCATCGTTCGAACAGTATGACTTCAGGCTCTCCTACGCTACACAAA
CGTTCACATTCAGAAGCGAGAAGTTCACCCAACAGCAGTTTAGGGCGGCT
TCCAACTCAATCGTCCTCTTCAGTTTTTGCTATGGTCAACAATAAAGGTA
CTTGATGATAAACAGTCTCATTTCATAGTCCCCGCATTAGAATTTCCAAG
GAATACTTACCTTGTTGATAATGTCCCTAATGTAACTTTGCTGAATACTA
TACCCCATTTCCAACCTGACCTAGAACTAAACTacgtcttttatgtttta
aagaAAGCTGATTATCTCTTAGAGCTGCTAAGGGTGTCATAGTCGGCttg
attttggaatttttcgattttttaggCTACACGGTGAGTCCGGAGAATTC
TCTACGCagacaacaacaacagcagatGGATTCCAGTGATTTGGGATCCT
CCATCGGTGACGAATCACAAAGAAACGTCCTCAATCAAGCACTGGTAAGT
CAATCAGCTTGAAGCGACTTTATGAATGTAATCTTATAATCGACACCTGT
TTGGTCTGAAGCGATACTTCTGTTGAGTCTTAGTTGCCTCAACTTCTCGC
TTGCTCTCACCGGgacaaaaaactttataagaacatttaacaTCCATTAC
ACGtcatttttaacaaagaataaAACAACTACTCCCCCTTCCTACTCTGT
ATCAGAACGAGTCTTACGTTTCTCGTTTCGTAGTACCTCTACGCTGATGA
ATATTAAGACTATCCGTAGATGTCGGGTATTTGTACAGACTACCGGACGt
attattttgttaattctACTTTCTCAGCACAAATGTCatgaaaaagaata
tatttcaaaGGACTGAATTTTAAGCATTAGCAATGATACCCTTTTGTATG
TACAAGAGCCACATTCGATTTTGAGTAATATCTTTATACCACTCTTTGTA
CATAGGTACGCAATGTGCGAGGGAAGATTCCAGAAGAATTATTACAAACA
CTGATGGCTTACACTTCAGTTGATCCCATCTTGAAACACTTGGCCAATCA
TTTTGTCGCCGAAATCGAAGAGAGAACTAAAGAAGGTACCTGCAAACCAA
TGGTCTTGTGTGAACCAAAGATGTTTGAAAGCACATAATGCATGTTAAAT
GTCCCGACGTTTCTCTTATTGACATATAATATTTTATctacattttacat
ttttttgctttcacGTTCTCGAGTTTAGCAttctataccttatcggggaa
aacgtagtcggggaaaattttcgtcggggtaaaatattcgtcacttgctg
gttttgGTAAGTGCATTAAGGCCGGGTAAAATTTTcctcggggaaaaata
ttcgtcacttggccgaaatttcgtcacttttccccgacgaagttttcccc
gataaggtaccctATTTAAATGGAAAGCTTGAGTCTTCATTGCAATACAA
TTGAATTTCGATAAGTAGCACTGTGGATAAGTGGTGCGCGGCTAAGTAGT
ATCATTTTTCACCGATCTTCTAAGAGTACTTTTCGGGATTCAACCTGGTT
ATTGGATTGGGGGTAATATTTGATCTTTTACTGGCTAGATaacacaattt
ttgaaatacatcgtttttttttgctttcaggTTTGATAAACGTAGAGCGT
CTGGAGAGTAAACTATCGCACTTGCAAGCACAAAAAAACTTAATCCATCT
CAGCTTACAGGAAAGCAAACAAAATGCTGAAAACCTGAGTTTGCTGTGTG
GGAAATACGAATCGAACAGCACAGCGTGGTCTTTAGCTCTACAGAACACT
GAGGAACTGCTCGAAACTTACGAAGTCATGTTACAGTTGCAAGAGTCGGA
AGCCGATATTTTCTCGCGTAATTGCCAAGCGATCGGAGTAGTCGGTAATT
TCGATACGATTAAATCGATGACATCGACGAAATCTTCTCAATCGAACATT
TCGATCGCATCATCGAGCTCACATATCGGGTTTGAAGATGAAGACATTTT
GAAAAGTTATCATAGTAAACGGAAAGATTTGGAAACGCAagccaaaaata
ttttattacaactcGATAAAAAATACGATAATGCTTCACAAAACCCCTCG
ATTGCTGACCACGATGAACTAAGCTACAAAAGTCGTACGAGTACGGGTAG
CTCGATGAACTCGACATGTACCGATACTTTATCGAAAGACGAGGAGCATC
GATTACGCGATTATATAAAACGATTAAAATCGGAACGGAACACGTATAAA
GCGACGGTAAACGAAAAACTGGAGTCGGTGAACGAATATTTTGATCCACC
TCAAAACACAAGTGGTCTTCCGTCGACAGACCGTTCAGAAAAACGTAATT
TTAACATGAACCTGGAAATGGCAGTCATCTTAGAAGATATGGAGGCATTG
AAGGAAGAACGTGCTGAACTCAAACACAATATTTATCTTCTGGAGAAGGA
GAAACGAGCTCTTGAACTGAAAATGAATGCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041149XLOC_041149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065672-exon-scaffold_442-1491911889:160473..160535TCONS_00065672-exon-scaffold_442-1491911889:160473..160535Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1510915933:160473..160535TCONS_00065672-exon-scaffold_442-1510915933:160473..160535Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1575043694:160473..160535TCONS_00065672-exon-scaffold_442-1575043694:160473..160535Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1491911889:163820..163948TCONS_00065672-exon-scaffold_442-1491911889:163820..163948Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1510915933:163820..163948TCONS_00065672-exon-scaffold_442-1510915933:163820..163948Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1575043694:163820..163948TCONS_00065672-exon-scaffold_442-1575043694:163820..163948Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1491911889:164201..164519TCONS_00065672-exon-scaffold_442-1491911889:164201..164519Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1510915933:164201..164519TCONS_00065672-exon-scaffold_442-1510915933:164201..164519Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1575043694:164201..164519TCONS_00065672-exon-scaffold_442-1575043694:164201..164519Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1491911889:164748..164866TCONS_00065672-exon-scaffold_442-1491911889:164748..164866Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1510915933:164748..164866TCONS_00065672-exon-scaffold_442-1510915933:164748..164866Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1575043694:164748..164866TCONS_00065672-exon-scaffold_442-1575043694:164748..164866Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1491911889:165328..165457TCONS_00065672-exon-scaffold_442-1491911889:165328..165457Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1510915933:165328..165457TCONS_00065672-exon-scaffold_442-1510915933:165328..165457Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1575043694:165328..165457TCONS_00065672-exon-scaffold_442-1575043694:165328..165457Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1491911889:166003..166854TCONS_00065672-exon-scaffold_442-1491911889:166003..166854Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1510915933:166003..166854TCONS_00065672-exon-scaffold_442-1510915933:166003..166854Clytia hemisphaericaexon
TCONS_00065672-exon-scaffold_442-1575043694:166003..166854TCONS_00065672-exon-scaffold_442-1575043694:166003..166854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_442supercontigscaffold_442:160473..166854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95403	0.916817	0.410269	0.554358	9.53637	9.30053	14.0887	15.1141	10.3846	17.6822	7.51113	7.01068	7.95566	5.55157	4.88264	3.61972	5.12502	6.19833	7.45144	7.89136	7.85873	5.44177	4.06643	5.19467	9.41	8.47817	3.8218	2.51012	3.08124	5.59803
Blast
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BLAST of TCONS_00065672 vs. Swiss-Prot (Human)
Match: CRCM (Colorectal mutant cancer protein OS=Homo sapiens GN=MCC PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.387e-32
Identity = 107/308 (34.74%), Postives = 165/308 (53.57%), Query Frame = 1 
Query:  658 EELLQTLMAYTSVDPILKHLANHFVAEIEERTKEGLINVERLESKLSHLQAQKNLIHLSLQESKQNAENLSLLCGKYESNSTAWSLALQNTEELLETYEVMLQLQESEADIFSRNCQAIGVVGNFDXXXXXXXXXXXXXXXXXXXXXXHIGFEDEDI---LKSYHSKRKDLETQAKNILLQLDKKYDN--ASQNPSIADHDELSYKSRTSTGSSMNSTCTDTLSKDEEHRLRDYIKRLKSERNTYKATVNEKLESVNEYFDPPQNTSGLPSTDRSEKRNFNMNLEMAVILEDMEALKEERAELKHNIY 1566
            E L  +L   +++  I + L +H  A  E + +E  +  ERL S++ HL++Q +L+ ++L+E K NAE +S+L GKYESN+TA  LALQ +E+ +E YE++L L ESE  +     +A GV  +                             DE+I   LK  H  RK  E  AK +L++LD       A    S+   + LS  S TST SS  S+C    +K++E RL+DYI++LK++R   K T+ E LES+  + DP      L    +    +  ++LE AV+++++ A+KEE AELK  +Y
Sbjct:  362 EHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQSG-----------------------DENITQMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDRAAVKLTMLE-LESI--HIDP------LSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLY 637
The following BLAST results are available for this feature:
BLAST of TCONS_00065672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRCM8.387e-3234.74Colorectal mutant cancer protein OS=Homo sapiens G... [more]
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