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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065674 ID=TCONS_00065674|Name=TCONS_00065674|organism=Clytia hemisphaerica|type=transcript|length=2411bpRun BLAST on NCBI protein sequence of TCONS_00065674-protein >TCONS_00065674-protein ID=TCONS_00065674-protein|Name=TCONS_00065674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=734bp RDTPETKCKLRRTRSGVSTRSTRRNFGSTTNLSAVEKLSEFSKLRQENSYRun BLAST on NCBI transcript from alignment at scaffold_442:163512..170990+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065674 ID=TCONS_00065674|Name=TCONS_00065674|organism=Clytia hemisphaerica|type=transcript|length=7479bp|location=Sequence derived from alignment at scaffold_442:163512..170990+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_442:163512..170990+ >TCONS_00065674 ID=TCONS_00065674|Name=TCONS_00065674|organism=Clytia hemisphaerica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_442:163512..170990+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065674 vs. Swiss-Prot (Human)
Match: CRCM (Colorectal mutant cancer protein OS=Homo sapiens GN=MCC PE=1 SV=2) HSP 1 Score: 231.106 bits (588), Expect = 5.942e-64 Identity = 196/494 (39.68%), Postives = 297/494 (60.12%), Query Frame = 1
Query: 712 EELLQTLMAYTSVDPILKHLANHFVAEIEERTKEGLINVERLESKLSHLQAQKNLIHLSLQESKQNAENLSLLCGKYESNSTAWSLALQNTEELLETYEVMLQLQESEADIFSRNCQAIGVVGNFDXXXXXXXXXXXXXXXXXXXXXXHIGFEDEDI---LKSYHSKRKDLETQAKNILLQLDKKYDNA--SQNPSIADHDELSYKSRTSTGSSMNSTCTDTLSKDEEHRLRDYIKRLKSERNTYKATVNEKLESVNEYFDPPQNTSGLPSTDRSEKRNFNMNLEMAVILEDMEALKEERAELKHNIYXXXXXXXXXXXXMNAKDAQEQAYIVHIEHLKSEVKDQLKKRRQML-------KDAQRKGQFSVMEDETLSIHXXXXXXXXXXXXXXXEEIQTSDSSRRERKLKQRIQELVDTLETLSKNSEIRHKQTNEYISDLKRANGALVTAYEXXXXXXXXXXXXFEQQVVQIVEKYQYQVKQLKEQIKVLKD 2157
E L +L +++ I + L +H A E + +E + ERL S++ HL++Q +L+ ++L+E K NAE +S+L GKYESN+TA LALQ +E+ +E YE++L L ESE + +A GV + DE+I LK H RK E AK +L++LD A S+ + LS S TST SS S+C +K++E RL+DYI++LK++R K T+ E LES+ + DP L + + ++LE AV+++++ A+KEE AELK +YLLEKEK+ALELK++ ++AQEQAY+VHIEHLKSEV++Q ++R + L KD K + + LS+ T S N+ + + +++ RRE+KLK R+QELV LE L+K+SEIRH+Q+ E+++DLKRAN LV AYEKAKK+H +LKK E Q++ +VE+++ QV+ LK++I +L++
Sbjct: 362 EHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQSG-----------------------DENITQMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDRAAVKLTMLE-LESI--HIDP------LSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMRSLSSTSSGSKDKPGK-ECADAASPALSLAELRTTCSENELAA-----EFTNAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVERHETQVRMLKQRIALLEE 817 The following BLAST results are available for this feature:
BLAST of TCONS_00065674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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