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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065713 ID=TCONS_00065713|Name=TCONS_00065713|organism=Clytia hemisphaerica|type=transcript|length=3025bpRun BLAST on NCBI protein sequence of TCONS_00065713-protein >TCONS_00065713-protein ID=TCONS_00065713-protein|Name=TCONS_00065713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=677bp AFFTSQTILYTTVERTFSRAISEKFELRERCIVKRHVIVMETSNEPFTKPRun BLAST on NCBI transcript from alignment at scaffold_443:109482..174391- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065713 ID=TCONS_00065713|Name=TCONS_00065713|organism=Clytia hemisphaerica|type=transcript|length=64910bp|location=Sequence derived from alignment at scaffold_443:109482..174391- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_443:109482..174391- >TCONS_00065713 ID=TCONS_00065713|Name=TCONS_00065713|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_443:109482..174391- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065713 vs. Swiss-Prot (Human)
Match: ENASE (Cytosolic endo-beta-N-acetylglucosaminidase OS=Homo sapiens GN=ENGASE PE=1 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 2.095e-95 Identity = 199/599 (33.22%), Postives = 294/599 (49.08%), Query Frame = 2
Query: 248 NRPKTLLCHDMRGGYLQDRFDQGYPSTDCYSFYHWHLVDVFCYFSHHFVTIPPVQWINAAHKNGVKMIGTIITEWDEGRKNLQKVLKSKE-AVEVFVKCLVGIATKMKFEGWLVNIECHVEDEEMDQLVYLVKHLTDEMHKSNNDAQVIWYDSVIKSGQLRWQNKLCADNRLFFDVCDGIFLNYNWSPIHLTESLAQAKQRKHDVYVGVDIFGRGCPGGGGWNTNKALKIIREHDLSAAIFAFGWVYEKLGESVYHINNEMFWELLSDDLYPHYINRLPMVTTFNRGYGHSLFKNGKKISNRPISNLSLTDMQPTFPTNRYQVISGCPIITELAYKTDDAYNGNGCLFFSGTFEDAEQTNDVMFRLFKTDLRLTKKEASQLTILLTYKNNSEYHAQPKLVLCRGDGDKMVLDSYDTISVQN-----------------RWQIQEHRHKLNQDI-HIKEIQLH------------LQSTNNGRGRFQFLLGEFKIIDASERNLDAEKPPTTQLTIEHKALNKNANDEN-----IEIEIQLSWQ-VDENARSYNIFCLNASACCAIQDITGKTHKIDSSKTDFFIGRAFASHYQIGHFLIK 1933
RP+TLLCHDM GGYL DRF QG Y+FYHW +DVF YFSHH VTIPPV W N AH++GV ++GT ITEW+EG + + L E + + LV I +F+GWL+NIE + + + +++LT ++H+ V+WYDSV++SGQL+WQ++L NR+FFD CDG F NYNW HL L QA +R+ DVYVGVD+F RG GG ++T+K+L++IR+H S A+FA GWVYE L + + N + FW L L H I LP VT+F G G G++ + P +LS ++QP F +R + T +DA++G L G + +V RLF + K + + + YK L L GD + ++ + RW + R + H E+ L + F LGE +++DA+ +L A P +TI H +A++ +++ L W + R + I C + D G+ ++ + F+G AFA+ Y+I L++
Sbjct: 121 QRPRTLLCHDMMGGYLDDRFIQGSVVQTPYAFYHWQCIDVFVYFSHHTVTIPPVGWTNTAHRHGVCVLGTFITEWNEGGRLCEAFLAGDERSYQAVADRLVQITQFFRFDGWLINIENSLSLAAVGNMPPFLRYLTTQLHRQVPGGLVLWYDSVVQSGQLKWQDELNQHNRVFFDSCDGFFTNYNWREEHLERMLGQAGERRADVYVGVDVFARGNVVGGRFDTDKSLELIRKHGFSVALFAPGWVYECLEKKDFFQNQDKFWGRLERYLPTHSICSLPFVTSFCLGMGARRVCYGQEEAVGPWYHLSAQEIQPLFGEHRLGGDGRGWVRTHCCL--EDAWHGGSSLLVRGVI--PPEVGNVAVRLFSLQAPVPPK----IYLSMVYKLEGPTDVTVALELTTGDAGSCHIGGISVLNAETSSRHSLRPLRVPPTKLARWVGRCGRQLSGGWVQHCYEVSLRGCLLLDLLVCFSRPPGSREEESFTCRLGEIQVVDAA--SLLAPLPQVQAVTISHIRWQPSASEREGPPALLQLSCTLHWSFLLSQVRCFRIHCWGGMS----DDSPGR--ELPRPEMPMFLGLAFATQYRIVDLLVE 703 The following BLAST results are available for this feature:
BLAST of TCONS_00065713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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