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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065715 ID=TCONS_00065715|Name=TCONS_00065715|organism=Clytia hemisphaerica|type=transcript|length=1184bpRun BLAST on NCBI transcript from alignment at scaffold_443:119056..164340- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065715 ID=TCONS_00065715|Name=TCONS_00065715|organism=Clytia hemisphaerica|type=transcript|length=45285bp|location=Sequence derived from alignment at scaffold_443:119056..164340- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065715 vs. Swiss-Prot (Human)
Match: ENASE (Cytosolic endo-beta-N-acetylglucosaminidase OS=Homo sapiens GN=ENGASE PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.655e-33 Identity = 109/380 (28.68%), Postives = 170/380 (44.74%), Query Frame = 2
Query: 5 YSFYHWHLVDVFCYFSHHFVTIPPVQWINAAHKNGVKMIGTIITEWDEGRKNLQKVLKSKE-AVEVFVKCLVGIATKMKFEGWLVNIECHVEILQSLLSKCRVG----YSREEIVELNR-----MKRWINWCIWSNI*QMKCINQIMMHK*YGTIASSKVDN*DGRTSCVLTIGCSSMFVTVSSSTIIGHLFI*QNL*HKLNKENMMFTWALISLGGGVLEAEVGTRIK*ALKIIREHDLSAAIFAFGWVYEKLGESVYHINNEMFWELLSDDLYPHYINRLPMVTTFNRGYGHSLFKNGKKISNRPISNLSLTDMQPTFPTNRYQVISGCPIITELAYKTDDAYNGNGCLFFSGTFEDAEQTNDVMFRLFKTDLRLTKK 1114
Y+FYHW +DVF YFSHH VTIPPV W N AH++GV ++GT ITEW+EG + + L E + + LV I +F+GWL+N +++ LS VG + R +L+R + W + + S Q+K +++ H + V C F + + Q + + + +A ++ GG + + +L++IR+H S A+FA GWVYE L + + N + FW L L H I LP VT+F G G G++ + P +LS ++QP F +R + T +DA++G L G + +V RLF + K
Sbjct: 150 YAFYHWQCIDVFVYFSHHTVTIPPVGWTNTAHRHGVCVLGTFITEWNEGGRLCEAFLAGDERSYQAVADRLVQITQFFRFDGWLIN-------IENSLSLAAVGNMPPFLRYLTTQLHRQVPGGLVLWYDSVVQSG--QLKWQDELNQH------------------NRVFFDSCDGFFTNYNWREEHLERMLGQAGERRADVYVGVDVFARGNVVGGRFDTDK------SLELIRKHGFSVALFAPGWVYECLEKKDFFQNQDKFWGRLERYLPTHSICSLPFVTSFCLGMGARRVCYGQEEAVGPWYHLSAQEIQPLFGEHRLGGDGRGWVRTHCCL--EDAWHGGSSLLVRGVI--PPEVGNVAVRLFSLQAPVPPK 492 HSP 2 Score: 110.538 bits (275), Expect = 4.860e-26 Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 373 LVKHLTDEMHKSNNDAQVIWYDSVIKSGQLRWQNKLCADNRLFFDVCDGIFLNYNWSPIHLTESLAQAKQRKHDVYVGVDIFGRGCPGGGGWNTNK 660
+++LT ++H+ V+WYDSV++SGQL+WQ++L NR+FFD CDG F NYNW HL L QA +R+ DVYVGVD+F RG GG ++T+K
Sbjct: 251 FLRYLTTQLHRQVPGGLVLWYDSVVQSGQLKWQDELNQHNRVFFDSCDGFFTNYNWREEHLERMLGQAGERRADVYVGVDVFARGNVVGGRFDTDK 346 The following BLAST results are available for this feature:
BLAST of TCONS_00065715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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