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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065720 ID=TCONS_00065720|Name=TCONS_00065720|organism=Clytia hemisphaerica|type=transcript|length=1484bpRun BLAST on NCBI protein sequence of TCONS_00065720-protein >TCONS_00065720-protein ID=TCONS_00065720-protein|Name=TCONS_00065720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp MSNSTSIVPLVLWGRKQPAHTVSCIACTYDQKTIITGTVQGQLGIWDLCHRun BLAST on NCBI transcript from alignment at scaffold_443:204558..211458- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065720 ID=TCONS_00065720|Name=TCONS_00065720|organism=Clytia hemisphaerica|type=transcript|length=6901bp|location=Sequence derived from alignment at scaffold_443:204558..211458- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_443:204558..211458- >TCONS_00065720 ID=TCONS_00065720|Name=TCONS_00065720|organism=Clytia hemisphaerica|type=CDS|length=17850bp|location=Sequence derived from alignment at scaffold_443:204558..211458- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065720 vs. Swiss-Prot (Human)
Match: WDR7 (WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2) HSP 1 Score: 247.669 bits (631), Expect = 6.766e-71 Identity = 139/380 (36.58%), Postives = 224/380 (58.95%), Query Frame = 3
Query: 126 MSNSTSIVPLVLWGRKQPAHTVSCIACTYDQKTIITGTVQGQLGIWDLCHTEGSGLKIVPRNLLFAHGAEV--ISIACAPDGNLEHPNIVSLSSNGELCVWDIEDGLCLTINQIPGKHTSITSVQISKGNIKEWRLVLHGMYNDLYVLDSLTLQVLYSLKSRMSPNWMSTVCVIRPTGTRTKDDVLIGITVSNCLKVW--TLKASSENKGETVYEEESKTLDCLKAKCLCVNPFTQRTALIISSNTWQLFNAGDFSFLAALPAPDKVPLKKGDFVATNRVLIWNKAGKAYLYKLPSRYLLGSEQIDTHLSEKTAR----TPALLCEFSGSPGQDCTDFPMFFSYWRRGPYYKLLIQGLNGG-VRVWKVPDSELEDQQLSK 1238
M+ ++ ++P+VLWGRK P H +S + T D TI+TG GQ+ +WDL L+I PR LLF H A + +S ACA + IVS S +GE+C+WD+ DG C+ ++ HT I Q S GN +E RL+ HG Y ++ V+D+ +L+VLYSL S++SP+W+S++ +IR RT++D ++ ++V+ LKVW T + S E ++EEESK + C + + FTQR+ L++ S W++F+AGD+S L + P+ + GDFV++++V+IW + G++Y+YKLP+ L S+ + + + +L + C FF Y R ++KLLIQG + G + +W + D+ D+Q S+
Sbjct: 1 MAGNSLVLPIVLWGRKAPTHCISAVLLTDDGATIVTGCHDGQICLWDL----SVELQINPRALLFGHTASITCLSKACASS---DKQYIVSASESGEMCLWDVSDGRCIEFTKLACTHTGIQFYQFSVGNQREGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIR--SHRTQEDTVVALSVTGILKVWIVTSEISDMQDTEPIFEEESKPIYCQNCQSISFCAFTQRSLLVVCSKYWRVFDAGDYSLLCSGPSENGQTWTGGDFVSSDKVIIWTENGQSYIYKLPASCLPASDSFRSDVGKAVENLIPPVQHILLDRKDKELLICPPVTRFF-YGCREYFHKLLIQGDSSGRLNIWNISDT--ADKQGSE 368 The following BLAST results are available for this feature:
BLAST of TCONS_00065720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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