TCONS_00065724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065724
Unique NameTCONS_00065724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065724 ID=TCONS_00065724|Name=TCONS_00065724|organism=Clytia hemisphaerica|type=transcript|length=1750bp
TAGAAAGTTATTTTCTTTTGGGCAATGCCACTTTCCTGTTCAGGAAATAA
TTCCCATGAAGGCAGTTCCCAAGGCAATTTTTTTCTGCCCAACAACTTTC
CATTTTTTCATCAATGGATATAAATGaagaaatttgataaaaattatgaT
ACTGCATAGTTTAAGTGTTTGAGTTTCTATTGTATTTTAAGAAAGTAAAT
TATCAACTGTATACCAATTACGTGATCaacataaaaaaattagaagttTT
GTGTACTAGCAAAAGTCAAAGATATGGGTGGACTATTTTCATCcaagaaa
aaaactgaaaataaacaaCCAAATCGAATTACAGAACAAGATAAGGCTGT
TTTGtcatTAAAGCAACAAAGAGATAAGTTGAAACAATACCAGAAAAAGa
taaACTTAACATTggaaaaagaaagacaatatGCAAAACAGTTGCTCAAA
GATAATAAGAAAGACAAAGCGAAACTACTGTTGAAAAAGAAACATTATCA
AGAAAATTTATTAAAGAAAACTGATGGTCAATTAGAAAATATTGATCGAC
TGATATCAGAAGTAGAATTTGCACAAGTTGAATTGAAGGTTGTTGAAGGA
TTAAAACAAGGCAATGAAGCGCTGAAAAAATTACATGAGATCATGTCAGT
TGAAGACGTGGAACGTATTATGGACGAAGCACAAGAGGGAATCGAATACC
AGAATGAAATCGATGAACTACTAAGCGGAGGTTTGACTGCTGAAGATGAG
GAAGATATTATGAACGAACTTGCTGAATTAGAACGACTTGAACTACCCTC
TGTTCCTGACACCGAAATTCCAACAGCTGATGTCGATGACCAGTTACCCG
ATGTACCCTCCGCTGAACCTGcaACATCATcgaaaacgaaaacaaaagaa
acagaACGAGTTGCCATGGCAGCTACTTGATACGTTTACACGTTTCCTAG
ACAGGACAGAACGCCACTAGCGGTATTAGAATCAGAATGTAGATTTGTCA
TATTCAATGCTCCAAGTATGATTGATATTCGAATTGAATTATGGGAACAC
GTTCTTTTGATTCATGATAACGATTGGTTGAAAAACAAAGACTTTTGtaa
attaacataaattaaGTTGAGTAGGATTTAACAGAGTACTCAAGACAAAC
TGAAAGTGGGAAGCATTTACTTTATTCATATATTTCGAAAATAACAATAA
CTTGCGGTTAAGTTGCGGTTTACTTATCAAATTAGAGTTTTTTAAAACCT
TTCAAGTCCATGGGAATTTCTTATctcatcaataacagattttatAGTTT
ctgtttcctttttttttgtaattttcaaataattaaatgggctgttccat
taaatttccatacagggggatggacgaacctttttaaggcaaataagaAT
TCTGTGAAATATGTGAATACCCCCGTGGAAAACGGCAAAATCGCAAAAGa
agccttggaaaaattctttacaTACCTTAAAAAAGTAAGGCGTGGACGAG
CTAAAATCAGCCTTTTACCCcttagaaattttagaataaactTTTACCtc
cttgaaaaatgaaaaaatactccGTTATACCCCTTGGAAATTCTTCTccg
attaccccctggaaatgttcgtccacccccctgtatggatataaaatgga
atggcccaattcaTACAAGAAATATTATCagcattatttatttttaaaat
ataatttcttaCCTAGAAAATAATACTGTTATCGTCCTATTTTTTGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00065724-protein

>TCONS_00065724-protein ID=TCONS_00065724-protein|Name=TCONS_00065724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MGGLFSSKKKTENKQPNRITEQDKAVLSLKQQRDKLKQYQKKINLTLEKE
RQYAKQLLKDNKKDKAKLLLKKKHYQENLLKKTDGQLENIDRLISEVEFA
QVELKVVEGLKQGNEALKKLHEIMSVEDVERIMDEAQEGIEYQNEIDELL
SGGLTAEDEEDIMNELAELERLELPSVPDTEIPTADVDDQLPDVPSAEPA
TSSKTKTKETERVAMAAT
Run BLAST on NCBI

transcript from alignment at scaffold_443:278096..293290-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065724 ID=TCONS_00065724|Name=TCONS_00065724|organism=Clytia hemisphaerica|type=transcript|length=15195bp|location=Sequence derived from alignment at scaffold_443:278096..293290- (Clytia hemisphaerica)
TAGAAAGTTATTTTCTTTTGGGCAATGCCACTTTCCTGTTCAGGAAATAA
TTCCCATGAAGGCAGTTCCCAAGGCAATTTTTTTCTGCCCAACAACTTTC
CATTTTTTCATCAATGGATATAAATGAAGAAATTTGATAAAAATTATGAT
ACTGCATAGTTTAAGTGTTTGAGTTTCTATTGTATTTTAAGAAAGTAAAT
TATCAACTGTATACCAATTACGTGATCAACATAAAAAAATTAGAAGTTTT
GTGTACTAGCAAAAGTCAAAGATATGGGTGGACTATTTTCATCCAAGAAA
AAAACTGAAAATAAACAACCAAATCGAATTACAGAACAAGATAAGGCTGT
TTTGGTAAGATATTCTGTAGTGGTTGTTTTTAACAAGTTTGAAATTTTAT
TGAATCTGTATCAATCTTTTTCAACTACGTTTTTTTATGTCATTTTTTTT
TTTATCTTCCTCTTGCCTTTCATTTTTTTCCTTCTCATTTTATACAGATA
TCTTCCTGAATTTTGAATTTTGAAAGATTTGGGGNTTAACTTGGAGAGGG
AATGTTTGTAAACATAGATTTTTTTTCATAACAGTTATTTTGGGGGTCGG
ATTTAGGCAGGGCTGTCGGATTTAGGACCACTCACGGTACTGAAGAAAGC
GGGAATTTGATGAGAGAGTTTTAGATCTAAAGCCTGAACTGACAGTCAGG
CACATCCTGTCAAATGCACGGGGTGAGCATTTGCATGGGGTATTTNGGCT
TCTTAAAAAACAGACATGCAGCACCATGGAAAGGCCCAGTGCCAGGCAAA
AAAATTAGTATGAATTGTACAACTGGCGATTTTATTTTATTTTTTTTTTT
AATTGTATTTTCAACAAAATTTTTTTTTCTTTCAGTCATTAAAGCAACAA
AGAGATAAGTTGAAACAATACCAGAAAAAGGTTTGTATGATGGATGACTG
TTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCACTGCCAGAA
GAAAGTAATCCTTCTCAGATAAAATATTCTTCTAAACCAGATAATAAAAT
TTAGAATTTTTTTCTTCAGATAAACTTAACATTGGAAAAAGAAAGACAAT
ATGCAAAACAGTTGCTCAAAGATAATAAGAAAGNTTCAGTGCTATTACAT
CACTTTTGTTTTCGACCCCTTGCATTTGCCACCCATCGCAAGTGAAAAAT
ACCCCGTTCATTTGCCAGGATGTGCCTGACTGACTGATAAGAAAGAAAAA
GGAAAGAAAGAAACGAGAAGAAAATTAGTTCCNAACAGTTGCTCAAAGAT
AATAAGAAAGAGTAAGTTATTACTTTTTTTTTCCCAAGCACTTATTTGCG
GAAGATGTAATTTTAGGTATCTATGGATCGTATGTAAATTAATTATTTTT
GTTATCAAATTCTTCTATGTAATTTTATATAGCTAAATTGAAACCTTCTG
TGATATGCCTGAAACAACAAGGGCCATCTATTTTTACAGTGGAAAAGCTT
TTTTTAAGGCAATCTTGTGATTTTTAGTTTTGAAATTTATCCTAGGGATG
AGAAATCTAATTTTCCTTGCGGTAATTTTTAGCTTATTTTACCGTGTCCC
TTTGCCTTTAGCAACTTGCCTCGATATACAAGAAATAAATTAAGTGTGAT
CTGTGAAAAGTAAATAACACACGTGGATATACTAACATGATGATTATTTA
TGTTGAAAATCTACTTTTTTTACATAGCAAAGCGAAACTACTGTTGAAAA
AGAAACATTATCAAGAAAATTTATTAAAGAAAACTGATGGTCAATTAGAA
AATATTGATCGACTGGTAAATAATTAAACATCGATTTTATATTTGATCTA
TTTTTTTCTTTAGAGATGTTTACTAGAAGAACTCTATAGGCAATTCTAAG
GTTAAGCTGCATCATGGGTAACCAGGACTAGTTCCATTTGTCAAATAAAA
AATCTTCAAAATTGGGCCTTTGATTATTTCTTTCAAAAGACAATTTCATC
TTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAAAGTAATCCTTCTCAGATAAAATATTCTTCTAAACCAGATAATGA
AATTTAGAATTTTTTTCTTCAGATAAACTTAACATTGGAAAAAGAAAGAC
AATATGCAAAACAGTTGCTCAAAGATAATAAGAAAGAGTAAGTTATTACT
TTTTTTTTCCCAAGCACTTATTTGCGGAAGATGTAATTTTAGGTATCTAT
GGATCGTATGTAAATTAATTATTTTTGTTATCAAATTCTTCTATGTAATT
TTATATAGCTAAATTGAAACCTTCTGTGATATGCCTGAAACAACAAGGGC
CATCTATTTTTACAGTGGAAAAGCTTTTTTTAAGGCAATCTTGTGATTTT
TAGTTTTGAAATTTATCCTAGGGATGAGAAATCTAATTTTCCTTGTGGTA
ATTTTTAGCTTATTTTACCGTGTCCCTTTGCCTTTAGCAACTTGCCTGGA
TATACAAGAAATAAATTAAGTGGATCTGTGAAAAGTAAATAACACACGTG
GATATACTAACATGATGATTATTTATGTTGAAAATCTACTTTTTTTACAT
AGCAAAGCGAAACTACTGTTGAAAAAGAAACATTATCAAGAAAATTTATT
AAAGAAAACTGATGGTCAATTAGAAAATATTGATCGACTGGTAAATAATT
AAACATCGATTTTATATTTGATCTATTTTTTTCTTTAGAGATGTTTACTA
GAAGAACTCTATAGGCAATTCTAAGGTTAAGCTGCATCATGGGTAACCAG
GACTAGTTCCATTTGTCAAATAAAAAATCTTCAAAATTGGGCCTTTGATT
ATTTCTTTCAAAAGACAATTTCATCTTTTGTAATAATCGATGTAAAGTAC
TCTTATTTAAGACCTTTAAATCTCTGCTTAAATGCTGCTAAACTACTCGA
ATTTAGATCATATTACTATTTTGAATTGCTAGTTAGTTCTTTACTTCGTT
TTAGATATCAGAAGTAGAATTTGCACAAGTTGAATTGAAGGTTGTTGAAG
GATTAAAACAAGGCAATGAAGCGCTGAAAAAATTACATGAGGTATATTTA
TGATACTGTGAACTAAAAGCTTATAATATTATACTTTTTTAAGCTTATAA
TATTATACTTTTTTCTAAGGAAAAGATTGAAAACAATTGAATTAAATTGA
AAACTTATTGATCAAATCACGTAATGCTTTCCTAGAATGATAAAAAAGAG
TTTCTGAAACGATAAAAAACGATATATACGAGGCAATATGACAAAGAAAA
TGAAGAAACCCGTATATGAGTTCCTTCAAACCTCTCCATTCGAAGGTCTC
GAGAGTCGGGAGTCAAAAAACTCTTCAAAAATTGTGTTTTCTCTTAATTA
AGATCATGTCATAAGATCATACCTTTATGAGCTCCCATAGAGCCCTCTCT
CCAAAAGGCCCCGCTCGACTGTCATGAAGAACCAAAACTTTTCACCATAA
AAACTTGTATTTTTTTCTCACTTAGATCATGTCAGTTGAAGACGTGGAAC
GTATTATGGACGAAGCACAAGAGGGAATCGAATACCAGAATGTAAGAATT
ACTTTTATATTTATTACGGTTCTGTTTCCATGATCTAAATTTGGATGTAT
AAGATACTGCTTTCATAAGGAAAGATTTAATAAATTTGCACATTCATAAA
CGATTTTTGACAAATTATGATTCATTCATCTTTTTGACTGTCCTAGTTTT
AAAGTATACTAAAATTAAAGTGAGTAGGCTTTCAATAAAAAAGAATCAAC
AAAAAATTCTTATTCTAAGGTCCATAATATCTCGAGAAACTTGTAGTAGA
GAGCCTTCATTTGCGATCAAAAGGTTTTGGACTATGTAAAAAAAATTGTA
AATCTACAAACAAAGGTGAAAAGATACCCCTCTTACAGTTTTGTATTTCT
CTAAGCTCAAATTCAAGTGTTCTTTTCACTCGCAAATTTGCTGAGTGACT
CTACAAATTGTAGACCTCAAAGAGTAGAAGAAATTATTACATATAGCCTG
GAAATCTAACAAATAATATATCATTGAAAAAATTGATTGATAAAAAATCA
ATATGTTGTTGCTTTCATTTATCTTTATACATGGCATGGACCAGGGGTTT
AGGTACCCCCTAAGAAAATAGGTACCCCTTGAATTTTAGGTACCCCCAAA
CAACAGACGTTAGTAGGTACCCCCTGTGATTGGTACCCCCTGTGACTTGA
GTATATGTCAAGAAATGAAAAAATTGTATAATTTTACAATTAAAAAGAAT
AATGACAGTTAGATAAAAGCAAGATAAAATATAGTTCCCAAGCCCCCAGA
CCTTACTGCATAAAAGTTAGATTAGTTAAATTTAAAAAAAATCCAGCCCC
CAGCCTTTTTCAGGAAGATTTTGGTTGTAGCCTGCGGGCTGGGTGGGGAG
GGGGGGGGTTCATGCCATGTTATATTAATATCATTAGAAAAATTTCAAGT
TCACTTGATTCTCTATTTGTTAACTAAGTTGTTTTCGTTCAAGTATTTCA
AATTTTGAGAACAACTTCCATGAGAATTGCTACCTTTTATTAAATGTCTG
TTTTTATTCAAATTTGAAAGAGGATAATTTGAGCGGGTCATCACTTGCAT
ATTTTCGTGAAATTTTTCCTCCAGTCCATTCGGTCACCCCGATCTGTTCG
AATTGGCAACGAGTGAAAAAGAGAATAAACGTTTTGACAACATCTCTGGA
AAGAGAGAATCCAGCACATCTATGGTTGCTCGGTGTAGATTGTCCGAGAA
AACGACCACCGTAGGTGAAGTTGTATTTTTCGGACTCTTCCGGGTTTCGG
TGCATATCAAATTGCTCGGGATTCTCGAAAAGTTGATCATCCCGGTGTAT
GAAGTAAGGTAGCGCGCATAACAAGTCTCCTTTGTTAATCCGGAATTTCC
CCGATGTTGAATCGAGCTGGAAATCGGATTTCGCTTTACCATAAATGAAA
GCTTTAGATGACCAACGTAGCATTTCAGTGAAGAATTTATGGAGATTTGG
TAATGCTGATAGATTGGTTTGTTCTGGATCCTTGAAATATTGATCAGCTT
CTGTTCTCAGCAGTTGCTTGTCATCGCTGGTTAATCTCAGGTAGCAATAC
AATGAATTGAGAACGAAGATTGTAATAGCGTTGCTGGCATCCAGGCATAC
GACATAGCATATATCTTTGAACATTTCTTCTTGGGTCAACCCGCTGTTTG
AGAATTGGATAGATAGGTTTTTTAATGAATCCACTTTGTTGAAAATCGTC
ATGATGTTTTCGATCAAGGTGTCGGCTTCCCCAGGCATCTTTTCCATAGT
TAACATACCTTTGAAAAAGAGAGAGATCAACATGCTTTTAATTACTGATT
GAAGCCAGTATCTACCTTCCCATTGGTCAGGATCAGCATACAAGCTTACA
ATTTTATCAATGATCAAGTTGGCTTGTTTGAAGCCAACTCGTTGGGGTCT
CACCAAGTACCTGAAGTTGCCCAGCTGGCACACAACGTTCTTTCGACCTT
TATTTTATTTATTTGAGTTGCCTGAAGATTGCCTTTATCTAATGTTCACA
ACGTCCATAATAACGTTAGATGAATGTTGAAATAAAGTTGTATGCCAGCT
GGGTGGCTATGACTATAGATGTTTGGTGGCAAAGTGTGCGAGCTCCTGTG
AACTTACCTTGTGTATATTTCTCGAGAGGTGTTATGTCTTCAATGTGAAC
ACCCAACAACATGTGACAAATAACTCGTTTAGCTGCAGTCGAAAACATTC
CTTCCCAATCCACAGATGAAGCACCACCAATACCATGTTTACTGAGTACC
TTGAATTCTTTCTCAATTATGGCTACCATGTTGGGTTTTTGTTTCTCGTA
ACTCTTAGCAACGAAATTCATGATAAAAGGTTTATGTATTTGATGACCTT
CGCCAACACTGAACACACAAGGCGTTTGACCTAACATCATTTCTGGACGT
AGCTCCAAGAAACCATGGCCGGTTTTGCTTCTCTCCGTTTTGGTCATGTC
CAATACAGCGGCAACAGCTACATGGTCACACACAAACGTTGTCCAATCGT
TGAATATTTTGGCAGAGAATACAGTACTCTGGTGTTTTTCTATTTGTTGT
TGGAAGAAATCCCATCCGTTCCATTTGAGCTGGATGAGATTGAAAAGACT
GATTTTCCACCACTGGTGTGGTACGTCTCGTAATTCTTTGTTTTTCGTCG
ATGTCATTTTAATTTTTCTTCCCTAGAAAGAATTTTCAAAATGCTATAGT
CACAAATTATTCTGTAAAGCCCGANATCGTTAGATCGTGCATCTTAAATT
ACACCAACCCCTTTATACTTACATTTTGGATACTTCAAGGTCAGAAATTT
TTGAAAGATTGGGGTAAAATCAAGTTCACACCAAAGAATTTTCAAGAGGT
AATCCATCATGGAGCTCAGTTAGTTGTTGCTTTCATTTATCTTTATATTA
ATATCATTAGAAAAATTTCAAGTTCACTTGATTCTCTATTTGTTAACTAA
GTTGTTTTCGTTCAAGTATTTCAATCTTTGAGAACAACTTCCATGAGAAT
TGCTACCTTTTATTAAATGTCTGTTTTTATTCAAATTTGAAAGAGGATAA
TTTGAGCGGCTCATCACTTGCATATTTTCGTGAAATTTTTCCTCCAGTCC
ATTCGGTCACCCCGATCTGTTCGAATTGGCAACGAGTGAAAAAGAGAATA
AACGTTTTGACAACATCTCTGGAAAGAGAGAATCCAGCACATCTATGGTT
GCTCGGTGTAGATTGTCCGAGAAAACGACCACCGTAGGTGAAGTTGTATT
TTTCGGACTCTTCCGGGTTTCGGTGCATATCAAATTGCTCGGGATTCTCG
AAAAGTTGATCATCCCGGTGTATGAAGTAAGGTAGCGCGCATAACAAGTC
TCCTTTGTTAATCCGGAATTTCCCCGATGTTGAATCGAGCTGGAAATCGG
ATTTCGCTTTACCATAAATGAAAGCTTTAGATGACCAACGTAGCATTTCA
GTGAAGAATTTATGGAGATTTGGTAATGCTGATAGATTGGTTTGTTCTGG
ATCCTTGAAATATTGATCAGCTTCTGTTCTCAGCAGTTGCTTGTCATCGC
TGGTTAATCTCAGGTAGCAATACAATGAATTGAGAACGAAGATTGTAATA
GCGTTGCTGGCATCCAGGCATACGACATAGCATATATCTTTGAACATTTC
TTCTTGGGTCAACCCGCTGTTTGAGAATTGGATAGATAGGTTTTTTAATG
AATCCACTTTGTTGAAAATCGTCATGATGTTTTCGATCAAGGTGTCGGCT
TCCCCAGGCATCTTTTCCATAGTTAACATACCTTTGAAAAAGAGAGAGAT
CAACATGCTTTTAATTACTGATTGAAGCCAGTATCTACCTTCCCATTGGT
CAGGATCAGCATACAAGCTTACAATTTTATCAATGATCAAGTTGGCTTGT
TTGAAGCCAACTCGTTGGGGTCTCACCAAGTACCTGAAGTTGCCCAGCTG
GCACACAACGTTCTTTCGACCTTTATTTTATTTATTTGAGTTGCCTGAAG
ATTGCCTTTATCTAATGTTCACAACGTCCATAATAACGTTAGATGAATGT
TGAAATAAAGTTGTATGCCAGCTGGGTGGCTATGACTATAGATGTTTGGT
GGCAAAGTGTGCGAGCTCCTGTGAACTTACCTTGTGTATATTTCTCGAGA
GGTGTTATGTCTTCAATGTGAACACCCAACAACATGTGACAAATAACTCG
TTTAGCTGCAGTCGAAAACATTCCTTCCCAATCCACAGATGAAGCACCAC
CCATACCATGTTTACTGAGTACCTTGAATTCTTTCTCAATTATGGCTACC
ATGTTGGGTTTTTGTTTCTCGTAACTCTTAGCAACGAAATTCATGATAAA
TGGTTTATGTATTTGATGACCTTCGCCAACACTGAACACACAAGGCGTTT
GACCTAACATCATTTCTGGACGTAGCTCCAAGAAACCATGGCCGGTTTTG
CTTCTCTCCGTTTTGGTCATGTCCAATACAGCAGCAACAGCTACATGGTC
ACACACAAACGTTGTCCAATCGTTGAATATTTTGGCAGAGAATACAGTAC
TCTGGTGTTTTTCTATTTGTTGTTGGAAGAAATCCCATCCGTTCCATTTG
AGCTGGATGAGATTGAAAAGACTGATTTTCCACCACTGGTGTGGTACGTC
TCGTAATTCTTTGTTTTTCGTCGATGTCATTTTAATTTTTCTTCCCTAGA
AAGAATTTTCAAAATGCTATAGTCACAAATTATTCTGTAAAGCCCGAAGA
GCTAGATGTAGTGCATTAAGCTCTACCAAGCAAAAAAAGTCAACATCGCA
AAAAATATTGGTGCTATTGTTTTCGAAAACCCGCGAAGCTTCTTATTGGT
CAAGCGCTCAAATTCTATTGTAATGTCACGTGACCTACAAAGGATTTCCT
ACCTAACCTCGGCGCACTTATCAGCCAAAGCACGACATCTAGCCCATCGG
GCTTTATAAATTTATGGCTATAATACGGGACAATCATTAAGAACATTAAT
AAGTCGCAAACCATACGAGTTACGAGGACTGACCTTAGAAATATGCCTTG
TTTCATTCAGAATAATTTTATCTGAACTCACTGGTTTGTAAACTACAATC
AAGTGTATCTCAAGGCCGTAATATTCGAGACAAAAAGGGGAATTCTCTGT
AAAACTTTATTAAAGCCAAGAAAGATTGCCAAGGGTAATCAAAATTACCC
TTAGACAGAGCAAAATTACCCACAAACAGAGCAAGTTTACCCCCCGGACA
AGGCAAATTTTGTAGATTTTTCACTATCCCCCCTGGACACTATATCCTCC
ACCCACCCCCCATGTTCGGACATTTTCTGGAAGAGCCCAATGTAGTGTTT
TAACATTCAACTTGATACTTTGGGGCTTTGGAGTTTTGAAGCTCAAAATC
AAAAGTGTTCCATTAAGACCGAAAATATAACCTGGAAGCCAATAAACTTC
TCTCATAAAGTGTTCCATTAAGACCGAAAATATAACCTGAAAGCCAATAA
AATCCTCTCAAATTGAAATGACCAATGAAAGAAAGTGGAAATACTTAAAC
CAGCGAAAATACCCAGAAATGCCGATTCATTTTAACAATGATTGTAGTTC
GCTTTGTCTAAATTTTAACGTTATGCTTTTTTAGATGATTTTTTAGATCT
GATTTGAATGTAATTACATTCTATGTTTAGCACTTATTATCACGGTAATC
ATCACAAAAAATTGTTGGTCAGATCCATTTTGATAAGAAGGTAGCAAGCT
AGACGACAAATTCAGACATAGTAGAAATAATAGAGGGAATAAATTTAGTC
TATACAAACTAAATCCCATAACAATAATATACTACTGTATTTGTATTACA
CGCATTATAAACGACTCCAGTCTAATTAAAAGGTTAATCTTGATTTTGCC
AGCAGTGCCAATAAAAAAGATAAGTTTGCGACCATAATTAAGGGCCACTA
CGTTTTTTATATAATGTTCAAAGTTGTCGCCTCGAAATTCAGCAAAACAC
ATTAACTATCAATAATTCAGGCCTTTTTTTGTGTAAAGTCTAATTTTCTC
TCTCAAAAGAAAAACATTTTGACTACTGTTAGAAACTTGCACCAAAACCA
TTATCCGAGCTTACCTGGCGTTCCCACCTACAATCCAATGTCTTTTGAAA
TCATTATCTCTTTGCTTACTTTCGTTATACAGTGTATCCGGTAAAAAAGC
AGAACAGTTAAAAATAAATTAAAATCTCATAATCTTACTAAAGTTTCGAA
TAATAAACTTACCAAAGTAAATGTTAAAAATCAGACACACCGCGAGTGAC
TTCACTCATAGAGTACTATTTTCATAATAAAAAGCCTAAGAAAAAATGAC
ATACTTTACTACGGTAAAATAATCTGTGACAATTAAAAGGACAGCCGATG
TAAAACCACTAATTGAATGACATCAACTTTAAAGTTTAGTATAAGTACTA
GTAATCGTATGGTTTGGAGTGCAATTAACGATTAATCACGAGTAACAAAG
GAGAAAATAGTAATTTGCACGAGTCCGAAGGACGAGTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGCAAAAAGTGGTAATAGTGCAATTAACGATTAATTGC
ACTCCTCTAAACCAATCAGATTCGAGTAATTTTGCACGGCTGACGATTAA
TAAAGTAATTAGCAGAAAATATTAAGACAGGTAAGTAAGACGTCATATTT
CCAACAATAAAATAGGTTTTTAGAAAAAGAAATTGACTAATAATGTCATA
AAGATCCATGTAAAAAGTATGACGATTTTGTTTTGATTAAATTCTGTCCT
GCTTTTGACCGAACACGCTTCACACACTGTTTTACAAATTACGAATCGCC
TTGCTTTTCCAACTTTAATGATAAAGACTTTTAGATTTTTTTACTGTAAT
AGATTGTTATTATTTTCGTCTGACAGTAGGCTATATAGATTAGAATCTTT
TCCAAAATTGCAGCTTCGTTTTGATGGTTATGTGGTTTCTGAAATGAAGT
TTTGATTAGAAATGCAAAATATTATTGGTTTAAAATGAATAAAAATGTGT
TTGAATATAATAGACTGAGAGAAAATCATTTTGAGGGGAAGAAAGTGCGT
ACTTCGCAACATTAAAAAAGAACGACAAATTTCAACATCCACAACCCGAC
CGAAAACCGTAACACCCCTACGTATTCATTCCTCTTTGTATTTTGTTTAA
CGACTAACAGTTTATAAAATGAAAATATACGCATGCGTTTTAACTTTCTT
TTGAAAATGAAACAATACCTTATCGGGGAAAAAAATGTCGGAAGAAAGTG
ACGAAAATTTTGAGGGGGTGACGAAATTTTTCCCCGACATTTTTTCACCC
GACCAAAACTTGTACCCGATTTTTTTATCCCCGGCCAAAACATTTACCCA
ATATTTTTTTACCGAAATCAGTGCTTTAAACGTCGAATTATTAGATCCAT
TTTCGAGCTAGCCAAGGAAACCATTTCTTTTGGACAATTTAGTCGGGTGA
AAGTGACAAATTTGAAATTTTGGTCGGGAAAAAGTGACAAAATTGCCTCT
AGATGACAAAATTTTTCCCCGACGAAAAAAAAACCCGACTAAATAAAACT
CCGACATTTTCTTCCCCGATAAAGTAGATGCGAAGAAGACTCTTTCTCTA
TGTGGTTTAATCAATCAAGTTGATACTTTATTAAGGTGATGTAGAGATTT
TCATCACGTCAAATCTTTCGGTCATTTTTGAAATAGGCTTGCCCCCCCTG
CTACTGTCATTTCTCTAATTCAATGCGTCATCTAATAATAAATATGGGTC
AATTATTTTGACAAGTTTTGTTTAGTTTATTTCCTTTGAATATGAGTGTG
GATACTTTTTGAATCTACCTCAAAGGTCCTAAAAGCCCGCGCCCGTTCGT
TCGTTCGTCCGTCCGTTCAATTTCCACACTATCAGGCTATCGTGTGGAGT
CATTACGTAATATTTTCACCGCTAGAGTCAAAATGGTATCCACCTAGCCA
CAAAAAGTCTTTTACTGTCAACATTCTCTAAAAGTTCGCTCAACAATCAA
ACGCGCCAAAATATCACACATTTGAAAAGTCCTGTGTGTACCAAAACCAA
GCTGGTGCTTGATTGGCAAAATAGTTCTACCAGCTCGTCTCTCAAATAAT
TGTTGGACCTACCCCGGTGGAGGTCTTATAAATTAACCTGTGTTTGTTCG
TCCGTCCGTCCGTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATC
ATAGGAATCTTTTGTTTTTTGGTACAAAGGTGCAAAATGGTGGTGGCCAA
AATGTGACGGAGCCCGATTTTCGAAAAAAAATTTTGTTTGGCAAATTTGG
GCTAAAAAACGGCTAAAAAACGGGGTTTTTGGACTTTGTGAAAAATCGGA
ACATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGT
AAAAGATGGCTCAAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTATCTATAAGAATCACTA
TTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATG
AGATAGATGTTTTTTTTGTTCATGAGGGCTTACTTTTGAAGAATATGTGT
GTTCAGACAGGAAATTTTAGTTGCTTGGCGTGTTCTTATAGAAAAACTGG
CCAAATTCGATATTTTTTATAAGCACATTATCATTTACTTAGGTATTAGC
TTTTCTCGAGATTGGCTCTTTCATTCTTTATGATATTTTGCACAAAGATG
CATAACTTTCGAATGTGACGGATAGGAGCCCGATTTTCAAAGAAAATGTT
TTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTTTGAAATA
TTGGATCATTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGTAAAAGATG
GCTCAAGCAGATTTTTGTAAAAAAAGAGTTTTTCGGCTCAAAAAACGCAT
CTTAATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCC
GAATTACTCAATTTTTTGATGAGATTTTTTTGGTCACGAAGTTTTGAATA
TGAAAGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACTTTTTTTTA
TAAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAA
TGATTGTTTAGTGGTCACGTCACGTAGATATCAATTATAAATGTGTTAAA
TGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTATTATTTGATTG
TTGAGCGAAACTTTTTATCTATATAACCGTACACAGTTCTCCATTCACAT
ACTAGCAAAAATCAGGTCATGAATCAGCAAAACAGTTTACTATCAACACA
ACAAATCCCTGGTTCGCAACGTACTGGCTAATTCTAACCCAGTCTTTTCA
CGGCTTCAGTGTTGATAGGTGCGAGTCTTATGAGGAATATTTTCTCTTTC
TTTTTCACAGGAAATCGATGAACTACTAAGCGGAGGTTTGACTGCTGAAG
ATGAGGAAGATATTATGAACGAACTTGCTGAATTAGAACGACTTGAACTA
CCCTCTGTTCCTGACACCGAAATTCCAACAGCTGATGTCGATGACCAGTT
ACCCGATGTACCCTCCGCTGAACCTGGTAAGTCTGACCGATTTTGTGTCT
CCAGCTGAATAAGAATGACCTAGAACTAGCTGCTGTTTATGAACTAAATT
TGGTAAGTTTCCCTGGTTTTTTAACCTGCTTCCCTTTAGCCTTGCCGAAC
TAGAAAGTTATAATACTCCTTATTTTCTAAATTCTGATCCCGGCAAGTTG
CTCTGATTTGACTATTCCAGAAAAATTAACCCCCGTTGTAGTTGTAAGCT
AAGTAGATCTAGCGCTCTCGATGCGGGTACCACTTCAAAAAACTCCGATC
AAAATATTTTGGTTGGTCGGGATTGAGAAACTGCATCCAGGATCTATATA
AAGCTCAGTGATATCACCAGAAGGCTCTCAAAAAGAATTGCTATAGAAGT
GAAGAAGACATTTAAATTGCTATGTTTTTATTTCTCAACGTAACTCGACT
TACCCCTAAATGGAAGTATCCCACTACTACGCAAGAAAGGGCCAAAAGGG
CCTTAAACAGTCATATTACCAAATATAGGGCAAGGTTGGTCATTGTATTG
AATTTCTACAGGACTAATTAGTCGAAAAGTGAATGAAATGGTATTTGTTT
GTTTTCATTTTTTCAGCAACATCATCGAAAACGAAAACAAAAGAAACAGA
ACGAGTTGCCATGGCAGCTACTTGATACGTTTACACGTTTCCTAGACAGG
ACAGAACGCCACTAGCGGTATTAGAATCAGAATGTAGATTTGTCATATTC
AATGCTCCAAGTATGATTGATATTCGAATTGAATTATGGGAACACGTTCT
TTTGATTCATGATAACGATTGGTTGAAAAACAAAGACTTTTGTAAATTAA
CATAAATTAAGTTGAGTAGGATTTAACAGAGTACTCAAGACAAACTGAAA
GTGGGAAGCATTTACTTTATTCATATATTTCGAAAATAACAATAACTTGC
GGTTAAGTTGCGGTTTACTTATCAAATTAGAGTTTTTTAAAACCTTTCAA
GTCCATGGGAATTTCTTATCTCATCAATAACAGATTTTATAGTTTCTGTT
TCCTTTTTTTTTGTAATTTTCAAATAATTAAATGGGCTGTTCCATTAAAT
TTCCATACAGGGGGATGGACGAACCTTTTTAAGGCAAATAAGAATTCTGT
GAAATATGTGAATACCCCCGTGGAAAACGGCAAAATCGCAAAAGAAGCCT
TGGAAAAATTCTTTACATACCTTAAAAAAGTAAGGCGTGGACGAGCTAAA
ATCAGCCTTTTACCCCTTAGAAATTTTAGAATAAACTTTTACCTCCTTGA
AAAATGAAAAAATACTCCGTTATACCCCTTGGAAATTCTTCTCCGATTAC
CCCCTGGAAATGTTCGTCCACCCCCCTGTATGGATATAAAATGGAATGGC
CCAATTCATACAAGAAATATTATCAGCATTATTTATTTTTAAAATATAAT
TTCTTACCTAGAAAATAATACTGTTATCGTCCTATTTTTTGAAAC

Coding sequence (CDS) from alignment at scaffold_443:278096..293290-

>TCONS_00065724 ID=TCONS_00065724|Name=TCONS_00065724|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_443:278096..293290- (Clytia hemisphaerica)
ATGGGTGGACTATTTTCATCCAAGAAAAAAACTGAAAATAAACAACCAAA
TCGAATTACAGAACAAGATAAGGCTGTTTTGTCATTAAAGCAACAAAGAG
ATAAGTTGAAACAATACCAGAAAAAGATAAACTTAACATTGGAAAAAGAA
AGACAATATGCAAAACAGTTGCTCAAAGATAATAAGAAAGACAAAGCGAA
ACTACTGTTGAAAAAGAAACATTATCAAGAAAATTTATTAAAGAAAACTG
ATGGTCAATTAGAAAATATTGATCGACTGATATCAGAAGTAGAATTTGCA
CAAGTTGAATTGAAGGTTGTTGAAGGATTAAAACAAGGCAATGAAGCGCT
GAAAAAATTACATGAGATCATGTCAGTTGAAGACGTGGAACGTATTATGG
ACGAAGCACAAGAGGGAATCGAATACCAGAATGAAATCGATGAACTACTA
AGCGGAGGTTTGACTGCTGAAGATGAGGAAGATATTATGAACGAACTTGC
TGAATTAGAACGACTTGAACTACCCTCTGTTCCTGACACCGAAATTCCAA
CAGCTGATGTCGATGACCAGTTACCCGATGTACCCTCCGCTGAACCTGCA
ACATCATCGAAAACGAAAACAAAAGAAACAGAACGAGTTGCCATGGCAGC
TACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041174XLOC_041174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065724-exon-scaffold_443-1575043694:292937..293290TCONS_00065724-exon-scaffold_443-1575043694:292937..293290Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:292361..292405TCONS_00065724-exon-scaffold_443-1575043694:292361..292405Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:291054..291118TCONS_00065724-exon-scaffold_443-1575043694:291054..291118Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:290551..290638TCONS_00065724-exon-scaffold_443-1575043694:290551..290638Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:290150..290236TCONS_00065724-exon-scaffold_443-1575043694:290150..290236Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:289650..289715TCONS_00065724-exon-scaffold_443-1575043694:289650..289715Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:279565..279730TCONS_00065724-exon-scaffold_443-1575043694:279565..279730Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1575043694:278096..278974TCONS_00065724-exon-scaffold_443-1575043694:278096..278974Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:292937..293290TCONS_00065724-exon-scaffold_443-1510915933:292937..293290Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:292361..292405TCONS_00065724-exon-scaffold_443-1510915933:292361..292405Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:291054..291118TCONS_00065724-exon-scaffold_443-1510915933:291054..291118Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:290551..290638TCONS_00065724-exon-scaffold_443-1510915933:290551..290638Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:290150..290236TCONS_00065724-exon-scaffold_443-1510915933:290150..290236Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:289650..289715TCONS_00065724-exon-scaffold_443-1510915933:289650..289715Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:279565..279730TCONS_00065724-exon-scaffold_443-1510915933:279565..279730Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1510915933:278096..278974TCONS_00065724-exon-scaffold_443-1510915933:278096..278974Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:292937..293290TCONS_00065724-exon-scaffold_443-1491911889:292937..293290Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:292361..292405TCONS_00065724-exon-scaffold_443-1491911889:292361..292405Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:291054..291118TCONS_00065724-exon-scaffold_443-1491911889:291054..291118Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:290551..290638TCONS_00065724-exon-scaffold_443-1491911889:290551..290638Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:290150..290236TCONS_00065724-exon-scaffold_443-1491911889:290150..290236Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:289650..289715TCONS_00065724-exon-scaffold_443-1491911889:289650..289715Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:279565..279730TCONS_00065724-exon-scaffold_443-1491911889:279565..279730Clytia hemisphaericaexon
TCONS_00065724-exon-scaffold_443-1491911889:278096..278974TCONS_00065724-exon-scaffold_443-1491911889:278096..278974Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065724-proteinTCONS_00065724-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:278096..293290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.0025	37.5893	25.0062	29.3958	3.81786	0.272192	9.17253	6.8914	0.158182	0	0	0.382228	0.241433	0	3.02633	0.630884	3.73764e-05	0.00110905	0	0	7.58331	6.19396	18.5315	16.7277	0	4.66623	6.64546	4.80952	11.1636	9.21517
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
Blast
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BLAST of TCONS_00065724 vs. Swiss-Prot (Human)
Match: CHMP6 (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.419e-49
Identity = 101/185 (54.59%), Postives = 142/185 (76.76%), Query Frame = 1 
Query:  274 MGGLFSSKKKTENKQPNRITEQDKAVLSLKQQRDKLKQYQKKINLTLEKERQYXXXXXXXXXXXXXXXXXXXXHYQENLLKKTDGQLENIDRLISEVEFAQVELKVVEGLKQGNEALKKLHEIMSVEDVERIMDEAQEGIEYQNEIDELLSGGLTAEDEEDIMNELAEL--ERLELPSVPDTEIP 822
            MG LF  KK++      R+TEQDKA+L LKQQRDKL+QYQK+I   LE+ER  A+QLL+D +K++AKLLLKKK YQE LL +T+ Q+ +++ ++  +EF Q+E+KV+EGL+ GNE L K+H++MS+E+VERI+DE QE +EYQ +IDELL+G  T EDE+ I+ EL+ +  E++ELP VP   +P
Sbjct:    1 MGNLFGRKKQS------RVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQIELPEVPSEPLP 179
The following BLAST results are available for this feature:
BLAST of TCONS_00065724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHMP63.419e-4954.59Charged multivesicular body protein 6 OS=Homo sapi... [more]
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