TCONS_00065725 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065725
Unique Name	TCONS_00065725
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1524

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_443:278096..294898-

transcript sequence

>TCONS_00065725 ID=TCONS_00065725|Name=TCONS_00065725|organism=Clytia hemisphaerica|type=transcript|length=1524bp
GATGGGATACCATCACAAAACAGACCAAAATGGTGGACAAAAAGGAGGGG
AAAaaccaaaaatcgaaaaataaacTTCGAATCTTTTCCCTGACTTGGTG
AGGCCTGCTATTCAACCCAGGTTCAGTTtcatTAAAGCAACAAAGAGATA
AGTTGAAACAATACCAGAAAAAGataaACTTAACATTggaaaaagaaaga
caatatGCAAAACAGTTGCTCAAAGATAATAAGAAAGACAAAGCGAAACT
ACTGTTGAAAAAGAAACATTATCAAGAAAATTTATTAAAGAAAACTGATG
GTCAATTAGAAAATATTGATCGACTGATATCAGAAGTAGAATTTGCACAA
GTTGAATTGAAGGTTGTTGAAGGATTAAAACAAGGCAATGAAGCGCTGAA
AAAATTACATGAGATCATGTCAGTTGAAGACGTGGAACGTATTATGGACG
AAGCACAAGAGGGAATCGAATACCAGAATGAAATCGATGAACTACTAAGC
GGAGGTTTGACTGCTGAAGATGAGGAAGATATTATGAACGAACTTGCTGA
ATTAGAACGACTTGAACTACCCTCTGTTCCTGACACCGAAATTCCAACAG
CTGATGTCGATGACCAGTTACCCGATGTACCCTCCGCTGAACCTGcaACA
TCATcgaaaacgaaaacaaaagaaacagaACGAGTTGCCATGGCAGCTAC
TTGATACGTTTACACGTTTCCTAGACAGGACAGAACGCCACTAGCGGTAT
TAGAATCAGAATGTAGATTTGTCATATTCAATGCTCCAAGTATGATTGAT
ATTCGAATTGAATTATGGGAACACGTTCTTTTGATTCATGATAACGATTG
GTTGAAAAACAAAGACTTTTGtaaattaacataaattaaGTTGAGTAGGA
TTTAACAGAGTACTCAAGACAAACTGAAAGTGGGAAGCATTTACTTTATT
CATATATTTCGAAAATAACAATAACTTGCGGTTAAGTTGCGGTTTACTTA
TCAAATTAGAGTTTTTTAAAACCTTTCAAGTCCATGGGAATTTCTTATct
catcaataacagattttatAGTTTctgtttcctttttttttgtaattttc
aaataattaaatgggctgttccattaaatttccatacagggggatggacg
aacctttttaaggcaaataagaATTCTGTGAAATATGTGAATACCCCCGT
GGAAAACGGCAAAATCGCAAAAGaagccttggaaaaattctttacaTACC
TTAAAAAAGTAAGGCGTGGACGAGCTAAAATCAGCCTTTTACCCcttaga
aattttagaataaactTTTACCtccttgaaaaatgaaaaaatactccGTT
ATACCCCTTGGAAATTCTTCTccgattaccccctggaaatgttcgtccac
ccccctgtatggatataaaatggaatggcccaattcaTACAAGAAATATT
ATCagcattatttatttttaaaatataatttcttaCCTAGAAAATAATAC
TGTTATCGTCCTATTTTTTGAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_443:278096..294898-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065725 ID=TCONS_00065725|Name=TCONS_00065725|organism=Clytia hemisphaerica|type=transcript|length=16803bp|location=Sequence derived from alignment at scaffold_443:278096..294898- (Clytia hemisphaerica)
GATGGGATACCATCACAAAACAGACCAAAATGGTGGACAAAAAGGAGGGG
AAAAACCAAAAATCGAAAAATAAACTTCGAATCTTTTCCCTGACTTGGTG
AGGCCTGCTATTCAACCCAGGTTCAGTTGTAAGTTCATACCATTTTTTGA
GCTGTTTAAGTTTACTTCTATTTTTTAGCTCATGACCCAGAGCGTCAGTA
CTGTACGGTGTGTTTTTTGTTTTTGATACAAATTATTTAATTTAAGCTCT
CACATTTTTTTAACACCCCCCTGCCTGTACAACACGTATGTGTACATATT
GACATGTAATCCTTGAGAGAAGTTTTTATAGAAATCTGCAACAAAAAATT
AAGTGATCTCTTCTACTGATTGCTTCCCAGCGCTCCTTCGCAGCTGTTTA
TCAAATTTCCAGTACAAACGGCCCTTCTTTTTGGCACCCGTGGCCTTTCA
GTGCCTTGCACAACGGGCGNAAACGGCCCTTCTTTTTGGCACCCGTGGCC
TTTCAGTGCCTTGCACAACGGGCGGCTGTAAAATCCCACCTTTCATATAT
TTGTTTCAATCCGTGATCCGTGGCTTAGGTTTTTTCTCATCTTCAATTTA
TGAGGCCCCCCCTAGCGGTTTGCGTGATGGCGTGATTGGGACTTTTTTCT
TGCGTGATGGCGTGATTAGAGATTTTTTTGGCGTGATGGCGTGATTAAGA
TTTTGGCGTGATCAAGATTTTGGCGTGATGCGTGATAGGGCAAAAATTTG
AGGCGTGATGCGTGATTTGGGCTATTTTTCGCTATTTTTTGCGTGATGAC
AAATTTTAGCGATTTTCGTGATGCGTGATGGAGAAAATTTGTTTGCGTGA
TGGCGTGATTAGGGGTGTCGCTGGGGGGGCCTCATTTATATACCGTGAAT
GGTCCTAAATCCAACAGACCTGCCTAAATCCGATGGGGTCTTTCAAAGAT
ACAAACTAAAATAAAAACAAACCTTTTGCTTGCAAAGATACCAAAGTGTC
AACTAAACTGATAAATTTGATACACTGAACCAATTGAACCAAATAAAACA
ATAATTGTTTCCATACAAAACATAATTTTTTATTACAAAATAGTTAACAT
TAAACACGAGCAACAGGTTCAGAATACAGAATAGAGGTAATTATTTTTAC
ACATCACACATTGATCACATTAGTTGACATCTTGACATTATAGTCATATT
GTTTGATGTTTTGTTTTGTGAGTTCGTGCAATAGTTTATTGTTTAACTTG
GAGAGGGAATGTTTGTAAACATAGATTTTTTTTCATAACAGTTATTTTGG
GGGTCGGATTTAGGCAGGGCTGTCGGATTTAGGACCACTCACGGTACTGA
AGAAAGCAGGAATTTGATGAGAGAGTTTTAGATCTAAAGCCTGAACTGAC
TGACTGATAAGAAAGAAAAAGGAAAGAAAGAAACGAGAAGAAAATTAGTT
CTCGTTTTGATGTTATTATCGAAACAAAAGGATCAGTTACGCCGACATTC
CTTTCCACACGTCAGCAATCTAGTTTTTATAAATATGAAAACTAGATTGT
AAGGAAGATTCTAAAAAATAATAGCTAATTTCTTATACGACTACGTTGGT
GATAAAATTAGAAAGTTATTTTCTTTTGGGCAATGCCACTTTCCTGTTCA
GGAAATAATTCCCATGAAGGCAGTTCCCAAGGCAATTTTTTTCTGCCCAA
CAACTTTCCATTTTTTCATCAATGGATATAAATGAAGAAATTTGATAAAA
ATTATGATACTGCATAGTTTAAGTGTTTGAGTTTCTATTGTATTTTAAGA
AAGTAAATTATCAACTGTATACCAATTACGTGATCAACATAAAAAAATTA
GAAGTTTTGTGTACTAGCAAAAGTCAAAGATATGGGTGGACTATTTTCAT
CCAAGAAAAAAACTGAAAATAAACAACCAAATCGAATTACAGAACAAGAT
AAGGCTGTTTTGGTAAGATATTCTGTAGTGGTTGTTTTTAACAAGTTTGA
AATTTTATTGAATCTGTATCAATCTTTTTCAACTACGTTTTTTTATGTCA
TTTTTTTTTTTATCTTCCTCTTGCCTTTCATTTTTTTCCTTCTCATTTTA
TACAGATATCTTCCTGAATTTTGAATTTTGAAAGATTTGGGGNTTAACTT
GGAGAGGGAATGTTTGTAAACATAGATTTTTTTTCATAACAGTTATTTTG
GGGGTCGGATTTAGGCAGGGCTGTCGGATTTAGGACCACTCACGGTACTG
AAGAAAGCGGGAATTTGATGAGAGAGTTTTAGATCTAAAGCCTGAACTGA
CAGTCAGGCACATCCTGTCAAATGCACGGGGTGAGCATTTGCATGGGGTA
TTTNGGCTTCTTAAAAAACAGACATGCAGCACCATGGAAAGGCCCAGTGC
CAGGCAAAAAAATTAGTATGAATTGTACAACTGGCGATTTTATTTTATTT
TTTTTTTTAATTGTATTTTCAACAAAATTTTTTTTTCTTTCAGTCATTAA
AGCAACAAAGAGATAAGTTGAAACAATACCAGAAAAAGGTTTGTATGATG
GATGACTGTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCAC
TGCCAGAAGAAAGTAATCCTTCTCAGATAAAATATTCTTCTAAACCAGAT
AATAAAATTTAGAATTTTTTTCTTCAGATAAACTTAACATTGGAAAAAGA
AAGACAATATGCAAAACAGTTGCTCAAAGATAATAAGAAAGNTTCAGTGC
TATTACATCACTTTTGTTTTCGACCCCTTGCATTTGCCACCCATCGCAAG
TGAAAAATACCCCGTTCATTTGCCAGGATGTGCCTGACTGACTGATAAGA
AAGAAAAAGGAAAGAAAGAAACGAGAAGAAAATTAGTTCCNAACAGTTGC
TCAAAGATAATAAGAAAGAGTAAGTTATTACTTTTTTTTTCCCAAGCACT
TATTTGCGGAAGATGTAATTTTAGGTATCTATGGATCGTATGTAAATTAA
TTATTTTTGTTATCAAATTCTTCTATGTAATTTTATATAGCTAAATTGAA
ACCTTCTGTGATATGCCTGAAACAACAAGGGCCATCTATTTTTACAGTGG
AAAAGCTTTTTTTAAGGCAATCTTGTGATTTTTAGTTTTGAAATTTATCC
TAGGGATGAGAAATCTAATTTTCCTTGCGGTAATTTTTAGCTTATTTTAC
CGTGTCCCTTTGCCTTTAGCAACTTGCCTCGATATACAAGAAATAAATTA
AGTGTGATCTGTGAAAAGTAAATAACACACGTGGATATACTAACATGATG
ATTATTTATGTTGAAAATCTACTTTTTTTACATAGCAAAGCGAAACTACT
GTTGAAAAAGAAACATTATCAAGAAAATTTATTAAAGAAAACTGATGGTC
AATTAGAAAATATTGATCGACTGGTAAATAATTAAACATCGATTTTATAT
TTGATCTATTTTTTTCTTTAGAGATGTTTACTAGAAGAACTCTATAGGCA
ATTCTAAGGTTAAGCTGCATCATGGGTAACCAGGACTAGTTCCATTTGTC
AAATAAAAAATCTTCAAAATTGGGCCTTTGATTATTTCTTTCAAAAGACA
ATTTCATCTTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGAAAGTAATCCTTCTCAGATAAAATATTCTTCTAAACCA
GATAATGAAATTTAGAATTTTTTTCTTCAGATAAACTTAACATTGGAAAA
AGAAAGACAATATGCAAAACAGTTGCTCAAAGATAATAAGAAAGAGTAAG
TTATTACTTTTTTTTTCCCAAGCACTTATTTGCGGAAGATGTAATTTTAG
GTATCTATGGATCGTATGTAAATTAATTATTTTTGTTATCAAATTCTTCT
ATGTAATTTTATATAGCTAAATTGAAACCTTCTGTGATATGCCTGAAACA
ACAAGGGCCATCTATTTTTACAGTGGAAAAGCTTTTTTTAAGGCAATCTT
GTGATTTTTAGTTTTGAAATTTATCCTAGGGATGAGAAATCTAATTTTCC
TTGTGGTAATTTTTAGCTTATTTTACCGTGTCCCTTTGCCTTTAGCAACT
TGCCTGGATATACAAGAAATAAATTAAGTGGATCTGTGAAAAGTAAATAA
CACACGTGGATATACTAACATGATGATTATTTATGTTGAAAATCTACTTT
TTTTACATAGCAAAGCGAAACTACTGTTGAAAAAGAAACATTATCAAGAA
AATTTATTAAAGAAAACTGATGGTCAATTAGAAAATATTGATCGACTGGT
AAATAATTAAACATCGATTTTATATTTGATCTATTTTTTTCTTTAGAGAT
GTTTACTAGAAGAACTCTATAGGCAATTCTAAGGTTAAGCTGCATCATGG
GTAACCAGGACTAGTTCCATTTGTCAAATAAAAAATCTTCAAAATTGGGC
CTTTGATTATTTCTTTCAAAAGACAATTTCATCTTTTGTAATAATCGATG
TAAAGTACTCTTATTTAAGACCTTTAAATCTCTGCTTAAATGCTGCTAAA
CTACTCGAATTTAGATCATATTACTATTTTGAATTGCTAGTTAGTTCTTT
ACTTCGTTTTAGATATCAGAAGTAGAATTTGCACAAGTTGAATTGAAGGT
TGTTGAAGGATTAAAACAAGGCAATGAAGCGCTGAAAAAATTACATGAGG
TATATTTATGATACTGTGAACTAAAAGCTTATAATATTATACTTTTTTAA
GCTTATAATATTATACTTTTTTCTAAGGAAAAGATTGAAAACAATTGAAT
TAAATTGAAAACTTATTGATCAAATCACGTAATGCTTTCCTAGAATGATA
AAAAAGAGTTTCTGAAACGATAAAAAACGATATATACGAGGCAATATGAC
AAAGAAAATGAAGAAACCCGTATATGAGTTCCTTCAAACCTCTCCATTCG
AAGGTCTCGAGAGTCGGGAGTCAAAAAACTCTTCAAAAATTGTGTTTTCT
CTTAATTAAGATCATGTCATAAGATCATACCTTTATGAGCTCCCATAGAG
CCCTCTCTCCAAAAGGCCCCGCTCGACTGTCATGAAGAACCAAAACTTTT
CACCATAAAAACTTGTATTTTTTTCTCACTTAGATCATGTCAGTTGAAGA
CGTGGAACGTATTATGGACGAAGCACAAGAGGGAATCGAATACCAGAATG
TAAGAATTACTTTTATATTTATTACGGTTCTGTTTCCATGATCTAAATTT
GGATGTATAAGATACTGCTTTCATAAGGAAAGATTTAATAAATTTGCACA
TTCATAAACGATTTTTGACAAATTATGATTCATTCATCTTTTTGACTGTC
CTAGTTTTAAAGTATACTAAAATTAAAGTGAGTAGGCTTTCAATAAAAAA
GAATCAACAAAAAATTCTTATTCTAAGGTCCATAATATCTCGAGAAACTT
GTAGTAGAGAGCCTTCATTTGCGATCAAAAGGTTTTGGACTATGTAAAAA
AAATTGTAAATCTACAAACAAAGGTGAAAAGATACCCCTCTTACAGTTTT
GTATTTCTCTAAGCTCAAATTCAAGTGTTCTTTTCACTCGCAAATTTGCT
GAGTGACTCTACAAATTGTAGACCTCAAAGAGTAGAAGAAATTATTACAT
ATAGCCTGGAAATCTAACAAATAATATATCATTGAAAAAATTGATTGATA
AAAAATCAATATGTTGTTGCTTTCATTTATCTTTATACATGGCATGGACC
AGGGGTTTAGGTACCCCCTAAGAAAATAGGTACCCCTTGAATTTTAGGTA
CCCCCAAACAACAGACGTTAGTAGGTACCCCCTGTGATTGGTACCCCCTG
TGACTTGAGTATATGTCAAGAAATGAAAAAATTGTATAATTTTACAATTA
AAAAGAATAATGACAGTTAGATAAAAGCAAGATAAAATATAGTTCCCAAG
CCCCCAGACCTTACTGCATAAAAGTTAGATTAGTTAAATTTAAAAAAAAT
CCAGCCCCCAGCCTTTTTCAGGAAGATTTTGGTTGTAGCCTGCGGGCTGG
GTGGGGAGGGGGGGGGTTCATGCCATGTTATATTAATATCATTAGAAAAA
TTTCAAGTTCACTTGATTCTCTATTTGTTAACTAAGTTGTTTTCGTTCAA
GTATTTCAAATTTTGAGAACAACTTCCATGAGAATTGCTACCTTTTATTA
AATGTCTGTTTTTATTCAAATTTGAAAGAGGATAATTTGAGCGGGTCATC
ACTTGCATATTTTCGTGAAATTTTTCCTCCAGTCCATTCGGTCACCCCGA
TCTGTTCGAATTGGCAACGAGTGAAAAAGAGAATAAACGTTTTGACAACA
TCTCTGGAAAGAGAGAATCCAGCACATCTATGGTTGCTCGGTGTAGATTG
TCCGAGAAAACGACCACCGTAGGTGAAGTTGTATTTTTCGGACTCTTCCG
GGTTTCGGTGCATATCAAATTGCTCGGGATTCTCGAAAAGTTGATCATCC
CGGTGTATGAAGTAAGGTAGCGCGCATAACAAGTCTCCTTTGTTAATCCG
GAATTTCCCCGATGTTGAATCGAGCTGGAAATCGGATTTCGCTTTACCAT
AAATGAAAGCTTTAGATGACCAACGTAGCATTTCAGTGAAGAATTTATGG
AGATTTGGTAATGCTGATAGATTGGTTTGTTCTGGATCCTTGAAATATTG
ATCAGCTTCTGTTCTCAGCAGTTGCTTGTCATCGCTGGTTAATCTCAGGT
AGCAATACAATGAATTGAGAACGAAGATTGTAATAGCGTTGCTGGCATCC
AGGCATACGACATAGCATATATCTTTGAACATTTCTTCTTGGGTCAACCC
GCTGTTTGAGAATTGGATAGATAGGTTTTTTAATGAATCCACTTTGTTGA
AAATCGTCATGATGTTTTCGATCAAGGTGTCGGCTTCCCCAGGCATCTTT
TCCATAGTTAACATACCTTTGAAAAAGAGAGAGATCAACATGCTTTTAAT
TACTGATTGAAGCCAGTATCTACCTTCCCATTGGTCAGGATCAGCATACA
AGCTTACAATTTTATCAATGATCAAGTTGGCTTGTTTGAAGCCAACTCGT
TGGGGTCTCACCAAGTACCTGAAGTTGCCCAGCTGGCACACAACGTTCTT
TCGACCTTTATTTTATTTATTTGAGTTGCCTGAAGATTGCCTTTATCTAA
TGTTCACAACGTCCATAATAACGTTAGATGAATGTTGAAATAAAGTTGTA
TGCCAGCTGGGTGGCTATGACTATAGATGTTTGGTGGCAAAGTGTGCGAG
CTCCTGTGAACTTACCTTGTGTATATTTCTCGAGAGGTGTTATGTCTTCA
ATGTGAACACCCAACAACATGTGACAAATAACTCGTTTAGCTGCAGTCGA
AAACATTCCTTCCCAATCCACAGATGAAGCACCACCAATACCATGTTTAC
TGAGTACCTTGAATTCTTTCTCAATTATGGCTACCATGTTGGGTTTTTGT
TTCTCGTAACTCTTAGCAACGAAATTCATGATAAAAGGTTTATGTATTTG
ATGACCTTCGCCAACACTGAACACACAAGGCGTTTGACCTAACATCATTT
CTGGACGTAGCTCCAAGAAACCATGGCCGGTTTTGCTTCTCTCCGTTTTG
GTCATGTCCAATACAGCGGCAACAGCTACATGGTCACACACAAACGTTGT
CCAATCGTTGAATATTTTGGCAGAGAATACAGTACTCTGGTGTTTTTCTA
TTTGTTGTTGGAAGAAATCCCATCCGTTCCATTTGAGCTGGATGAGATTG
AAAAGACTGATTTTCCACCACTGGTGTGGTACGTCTCGTAATTCTTTGTT
TTTCGTCGATGTCATTTTAATTTTTCTTCCCTAGAAAGAATTTTCAAAAT
GCTATAGTCACAAATTATTCTGTAAAGCCCGANATCGTTAGATCGTGCAT
CTTAAATTACACCAACCCCTTTATACTTACATTTTGGATACTTCAAGGTC
AGAAATTTTTGAAAGATTGGGGTAAAATCAAGTTCACACCAAAGAATTTT
CAAGAGGTAATCCATCATGGAGCTCAGTTAGTTGTTGCTTTCATTTATCT
TTATATTAATATCATTAGAAAAATTTCAAGTTCACTTGATTCTCTATTTG
TTAACTAAGTTGTTTTCGTTCAAGTATTTCAATCTTTGAGAACAACTTCC
ATGAGAATTGCTACCTTTTATTAAATGTCTGTTTTTATTCAAATTTGAAA
GAGGATAATTTGAGCGGCTCATCACTTGCATATTTTCGTGAAATTTTTCC
TCCAGTCCATTCGGTCACCCCGATCTGTTCGAATTGGCAACGAGTGAAAA
AGAGAATAAACGTTTTGACAACATCTCTGGAAAGAGAGAATCCAGCACAT
CTATGGTTGCTCGGTGTAGATTGTCCGAGAAAACGACCACCGTAGGTGAA
GTTGTATTTTTCGGACTCTTCCGGGTTTCGGTGCATATCAAATTGCTCGG
GATTCTCGAAAAGTTGATCATCCCGGTGTATGAAGTAAGGTAGCGCGCAT
AACAAGTCTCCTTTGTTAATCCGGAATTTCCCCGATGTTGAATCGAGCTG
GAAATCGGATTTCGCTTTACCATAAATGAAAGCTTTAGATGACCAACGTA
GCATTTCAGTGAAGAATTTATGGAGATTTGGTAATGCTGATAGATTGGTT
TGTTCTGGATCCTTGAAATATTGATCAGCTTCTGTTCTCAGCAGTTGCTT
GTCATCGCTGGTTAATCTCAGGTAGCAATACAATGAATTGAGAACGAAGA
TTGTAATAGCGTTGCTGGCATCCAGGCATACGACATAGCATATATCTTTG
AACATTTCTTCTTGGGTCAACCCGCTGTTTGAGAATTGGATAGATAGGTT
TTTTAATGAATCCACTTTGTTGAAAATCGTCATGATGTTTTCGATCAAGG
TGTCGGCTTCCCCAGGCATCTTTTCCATAGTTAACATACCTTTGAAAAAG
AGAGAGATCAACATGCTTTTAATTACTGATTGAAGCCAGTATCTACCTTC
CCATTGGTCAGGATCAGCATACAAGCTTACAATTTTATCAATGATCAAGT
TGGCTTGTTTGAAGCCAACTCGTTGGGGTCTCACCAAGTACCTGAAGTTG
CCCAGCTGGCACACAACGTTCTTTCGACCTTTATTTTATTTATTTGAGTT
GCCTGAAGATTGCCTTTATCTAATGTTCACAACGTCCATAATAACGTTAG
ATGAATGTTGAAATAAAGTTGTATGCCAGCTGGGTGGCTATGACTATAGA
TGTTTGGTGGCAAAGTGTGCGAGCTCCTGTGAACTTACCTTGTGTATATT
TCTCGAGAGGTGTTATGTCTTCAATGTGAACACCCAACAACATGTGACAA
ATAACTCGTTTAGCTGCAGTCGAAAACATTCCTTCCCAATCCACAGATGA
AGCACCACCCATACCATGTTTACTGAGTACCTTGAATTCTTTCTCAATTA
TGGCTACCATGTTGGGTTTTTGTTTCTCGTAACTCTTAGCAACGAAATTC
ATGATAAATGGTTTATGTATTTGATGACCTTCGCCAACACTGAACACACA
AGGCGTTTGACCTAACATCATTTCTGGACGTAGCTCCAAGAAACCATGGC
CGGTTTTGCTTCTCTCCGTTTTGGTCATGTCCAATACAGCAGCAACAGCT
ACATGGTCACACACAAACGTTGTCCAATCGTTGAATATTTTGGCAGAGAA
TACAGTACTCTGGTGTTTTTCTATTTGTTGTTGGAAGAAATCCCATCCGT
TCCATTTGAGCTGGATGAGATTGAAAAGACTGATTTTCCACCACTGGTGT
GGTACGTCTCGTAATTCTTTGTTTTTCGTCGATGTCATTTTAATTTTTCT
TCCCTAGAAAGAATTTTCAAAATGCTATAGTCACAAATTATTCTGTAAAG
CCCGAAGAGCTAGATGTAGTGCATTAAGCTCTACCAAGCAAAAAAAGTCA
ACATCGCAAAAAATATTGGTGCTATTGTTTTCGAAAACCCGCGAAGCTTC
TTATTGGTCAAGCGCTCAAATTCTATTGTAATGTCACGTGACCTACAAAG
GATTTCCTACCTAACCTCGGCGCACTTATCAGCCAAAGCACGACATCTAG
CCCATCGGGCTTTATAAATTTATGGCTATAATACGGGACAATCATTAAGA
ACATTAATAAGTCGCAAACCATACGAGTTACGAGGACTGACCTTAGAAAT
ATGCCTTGTTTCATTCAGAATAATTTTATCTGAACTCACTGGTTTGTAAA
CTACAATCAAGTGTATCTCAAGGCCGTAATATTCGAGACAAAAAGGGGAA
TTCTCTGTAAAACTTTATTAAAGCCAAGAAAGATTGCCAAGGGTAATCAA
AATTACCCTTAGACAGAGCAAAATTACCCACAAACAGAGCAAGTTTACCC
CCCGGACAAGGCAAATTTTGTAGATTTTTCACTATCCCCCCTGGACACTA
TATCCTCCACCCACCCCCCATGTTCGGACATTTTCTGGAAGAGCCCAATG
TAGTGTTTTAACATTCAACTTGATACTTTGGGGCTTTGGAGTTTTGAAGC
TCAAAATCAAAAGTGTTCCATTAAGACCGAAAATATAACCTGGAAGCCAA
TAAACTTCTCTCATAAAGTGTTCCATTAAGACCGAAAATATAACCTGAAA
GCCAATAAAATCCTCTCAAATTGAAATGACCAATGAAAGAAAGTGGAAAT
ACTTAAACCAGCGAAAATACCCAGAAATGCCGATTCATTTTAACAATGAT
TGTAGTTCGCTTTGTCTAAATTTTAACGTTATGCTTTTTTAGATGATTTT
TTAGATCTGATTTGAATGTAATTACATTCTATGTTTAGCACTTATTATCA
CGGTAATCATCACAAAAAATTGTTGGTCAGATCCATTTTGATAAGAAGGT
AGCAAGCTAGACGACAAATTCAGACATAGTAGAAATAATAGAGGGAATAA
ATTTAGTCTATACAAACTAAATCCCATAACAATAATATACTACTGTATTT
GTATTACACGCATTATAAACGACTCCAGTCTAATTAAAAGGTTAATCTTG
ATTTTGCCAGCAGTGCCAATAAAAAAGATAAGTTTGCGACCATAATTAAG
GGCCACTACGTTTTTTATATAATGTTCAAAGTTGTCGCCTCGAAATTCAG
CAAAACACATTAACTATCAATAATTCAGGCCTTTTTTTGTGTAAAGTCTA
ATTTTCTCTCTCAAAAGAAAAACATTTTGACTACTGTTAGAAACTTGCAC
CAAAACCATTATCCGAGCTTACCTGGCGTTCCCACCTACAATCCAATGTC
TTTTGAAATCATTATCTCTTTGCTTACTTTCGTTATACAGTGTATCCGGT
AAAAAAGCAGAACAGTTAAAAATAAATTAAAATCTCATAATCTTACTAAA
GTTTCGAATAATAAACTTACCAAAGTAAATGTTAAAAATCAGACACACCG
CGAGTGACTTCACTCATAGAGTACTATTTTCATAATAAAAAGCCTAAGAA
AAAATGACATACTTTACTACGGTAAAATAATCTGTGACAATTAAAAGGAC
AGCCGATGTAAAACCACTAATTGAATGACATCAACTTTAAAGTTTAGTAT
AAGTACTAGTAATCGTATGGTTTGGAGTGCAATTAACGATTAATCACGAG
TAACAAAGGAGAAAATAGTAATTTGCACGAGTCCGAAGGACGAGTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGCAAAAAGTGGTAATAGTGCAATTAACGA
TTAATTGCACTCCTCTAAACCAATCAGATTCGAGTAATTTTGCACGGCTG
ACGATTAATAAAGTAATTAGCAGAAAATATTAAGACAGGTAAGTAAGACG
TCATATTTCCAACAATAAAATAGGTTTTTAGAAAAAGAAATTGACTAATA
ATGTCATAAAGATCCATGTAAAAAGTATGACGATTTTGTTTTGATTAAAT
TCTGTCCTGCTTTTGACCGAACACGCTTCACACACTGTTTTACAAATTAC
GAATCGCCTTGCTTTTCCAACTTTAATGATAAAGACTTTTAGATTTTTTT
ACTGTAATAGATTGTTATTATTTTCGTCTGACAGTAGGCTATATAGATTA
GAATCTTTTCCAAAATTGCAGCTTCGTTTTGATGGTTATGTGGTTTCTGA
AATGAAGTTTTGATTAGAAATGCAAAATATTATTGGTTTAAAATGAATAA
AAATGTGTTTGAATATAATAGACTGAGAGAAAATCATTTTGAGGGGAAGA
AAGTGCGTACTTCGCAACATTAAAAAAGAACGACAAATTTCAACATCCAC
AACCCGACCGAAAACCGTAACACCCCTACGTATTCATTCCTCTTTGTATT
TTGTTTAACGACTAACAGTTTATAAAATGAAAATATACGCATGCGTTTTA
ACTTTCTTTTGAAAATGAAACAATACCTTATCGGGGAAAAAAATGTCGGA
AGAAAGTGACGAAAATTTTGAGGGGGTGACGAAATTTTTCCCCGACATTT
TTTCACCCGACCAAAACTTGTACCCGATTTTTTTATCCCCGGCCAAAACA
TTTACCCAATATTTTTTTACCGAAATCAGTGCTTTAAACGTCGAATTATT
AGATCCATTTTCGAGCTAGCCAAGGAAACCATTTCTTTTGGACAATTTAG
TCGGGTGAAAGTGACAAATTTGAAATTTTGGTCGGGAAAAAGTGACAAAA
TTGCCTCTAGATGACAAAATTTTTCCCCGACGAAAAAAAAACCCGACTAA
ATAAAACTCCGACATTTTCTTCCCCGATAAAGTAGATGCGAAGAAGACTC
TTTCTCTATGTGGTTTAATCAATCAAGTTGATACTTTATTAAGGTGATGT
AGAGATTTTCATCACGTCAAATCTTTCGGTCATTTTTGAAATAGGCTTGC
CCCCCCTGCTACTGTCATTTCTCTAATTCAATGCGTCATCTAATAATAAA
TATGGGTCAATTATTTTGACAAGTTTTGTTTAGTTTATTTCCTTTGAATA
TGAGTGTGGATACTTTTTGAATCTACCTCAAAGGTCCTAAAAGCCCGCGC
CCGTTCGTTCGTTCGTCCGTCCGTTCAATTTCCACACTATCAGGCTATCG
TGTGGAGTCATTACGTAATATTTTCACCGCTAGAGTCAAAATGGTATCCA
CCTAGCCACAAAAAGTCTTTTACTGTCAACATTCTCTAAAAGTTCGCTCA
ACAATCAAACGCGCCAAAATATCACACATTTGAAAAGTCCTGTGTGTACC
AAAACCAAGCTGGTGCTTGATTGGCAAAATAGTTCTACCAGCTCGTCTCT
CAAATAATTGTTGGACCTACCCCGGTGGAGGTCTTATAAATTAACCTGTG
TTTGTTCGTCCGTCCGTCCGTTCGTTCGTCTGTTACCAACTTTTCTCAGG
ATTGAATCATAGGAATCTTTTGTTTTTTGGTACAAAGGTGCAAAATGGTG
GTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAATTTTGTTTGGC
AAATTTGGGCTAAAAAACGGCTAAAAAACGGGGTTTTTGGACTTTGTGAA
AAATCGGAACATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCA
TCATAGGTAAAAGATGGCTCAAGCAGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTATCTATAAG
AATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATT
TTTTTATGAGATAGATGTTTTTTTTGTTCATGAGGGCTTACTTTTGAAGA
ATATGTGTGTTCAGACAGGAAATTTTAGTTGCTTGGCGTGTTCTTATAGA
AAAACTGGCCAAATTCGATATTTTTTATAAGCACATTATCATTTACTTAG
GTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATATTTTGCA
CAAAGATGCATAACTTTCGAATGTGACGGATAGGAGCCCGATTTTCAAAG
AAAATGTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTT
TTGAAATATTGGATCATTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGT
AAAAGATGGCTCAAGCAGATTTTTGTAAAAAAAGAGTTTTTCGGCTCAAA
AAACGCATCTTAATCTATAAGAATCACTATTAATAAGCATACATCAATGT
TCTTAGCCGAATTACTCAATTTTTTGATGAGATTTTTTTGGTCACGAAGT
TTTGAATATGAAAGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACT
TTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTGT
GTTCTGAATGATTGTTTAGTGGTCACGTCACGTAGATATCAATTATAAAT
GTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTATTA
TTTGATTGTTGAGCGAAACTTTTTATCTATATAACCGTACACAGTTCTCC
ATTCACATACTAGCAAAAATCAGGTCATGAATCAGCAAAACAGTTTACTA
TCAACACAACAAATCCCTGGTTCGCAACGTACTGGCTAATTCTAACCCAG
TCTTTTCACGGCTTCAGTGTTGATAGGTGCGAGTCTTATGAGGAATATTT
TCTCTTTCTTTTTCACAGGAAATCGATGAACTACTAAGCGGAGGTTTGAC
TGCTGAAGATGAGGAAGATATTATGAACGAACTTGCTGAATTAGAACGAC
TTGAACTACCCTCTGTTCCTGACACCGAAATTCCAACAGCTGATGTCGAT
GACCAGTTACCCGATGTACCCTCCGCTGAACCTGGTAAGTCTGACCGATT
TTGTGTCTCCAGCTGAATAAGAATGACCTAGAACTAGCTGCTGTTTATGA
ACTAAATTTGGTAAGTTTCCCTGGTTTTTTAACCTGCTTCCCTTTAGCCT
TGCCGAACTAGAAAGTTATAATACTCCTTATTTTCTAAATTCTGATCCCG
GCAAGTTGCTCTGATTTGACTATTCCAGAAAAATTAACCCCCGTTGTAGT
TGTAAGCTAAGTAGATCTAGCGCTCTCGATGCGGGTACCACTTCAAAAAA
CTCCGATCAAAATATTTTGGTTGGTCGGGATTGAGAAACTGCATCCAGGA
TCTATATAAAGCTCAGTGATATCACCAGAAGGCTCTCAAAAAGAATTGCT
ATAGAAGTGAAGAAGACATTTAAATTGCTATGTTTTTATTTCTCAACGTA
ACTCGACTTACCCCTAAATGGAAGTATCCCACTACTACGCAAGAAAGGGC
CAAAAGGGCCTTAAACAGTCATATTACCAAATATAGGGCAAGGTTGGTCA
TTGTATTGAATTTCTACAGGACTAATTAGTCGAAAAGTGAATGAAATGGT
ATTTGTTTGTTTTCATTTTTTCAGCAACATCATCGAAAACGAAAACAAAA
GAAACAGAACGAGTTGCCATGGCAGCTACTTGATACGTTTACACGTTTCC
TAGACAGGACAGAACGCCACTAGCGGTATTAGAATCAGAATGTAGATTTG
TCATATTCAATGCTCCAAGTATGATTGATATTCGAATTGAATTATGGGAA
CACGTTCTTTTGATTCATGATAACGATTGGTTGAAAAACAAAGACTTTTG
TAAATTAACATAAATTAAGTTGAGTAGGATTTAACAGAGTACTCAAGACA
AACTGAAAGTGGGAAGCATTTACTTTATTCATATATTTCGAAAATAACAA
TAACTTGCGGTTAAGTTGCGGTTTACTTATCAAATTAGAGTTTTTTAAAA
CCTTTCAAGTCCATGGGAATTTCTTATCTCATCAATAACAGATTTTATAG
TTTCTGTTTCCTTTTTTTTTGTAATTTTCAAATAATTAAATGGGCTGTTC
CATTAAATTTCCATACAGGGGGATGGACGAACCTTTTTAAGGCAAATAAG
AATTCTGTGAAATATGTGAATACCCCCGTGGAAAACGGCAAAATCGCAAA
AGAAGCCTTGGAAAAATTCTTTACATACCTTAAAAAAGTAAGGCGTGGAC
GAGCTAAAATCAGCCTTTTACCCCTTAGAAATTTTAGAATAAACTTTTAC
CTCCTTGAAAAATGAAAAAATACTCCGTTATACCCCTTGGAAATTCTTCT
CCGATTACCCCCTGGAAATGTTCGTCCACCCCCCTGTATGGATATAAAAT
GGAATGGCCCAATTCATACAAGAAATATTATCAGCATTATTTATTTTTAA
AATATAATTTCTTACCTAGAAAATAATACTGTTATCGTCCTATTTTTTGA
AAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041174	XLOC_041174	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_443	supercontig	scaffold_443:278096..294898 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.74393	5.74592	9.15236	8.08834	5.55207	7.71672	9.90115	10.3486	6.70073	7.21699	6.56176	4.82616	5.04698	4.04134	3.58911	6.39248	6.63076	8.35355	5.76618	5.90261	1.4504	1.89973	3.00617	3.61819	6.77529	14.8171	5.21342	2.71401	1.79881	2.60064

Blast

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BLAST of TCONS_00065725 vs. Swiss-Prot (Human)
Match: CHMP6 (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 2.118e-40
Identity = 87/159 (54.72%), Postives = 125/159 (78.62%), Query Frame = 3

Query:  126 VSLKQQRDKLKQYQKKINLTLEKERQYXXXXXXXXXXXXXXXXXXXXHYQENLLKKTDGQLENIDRLISEVEFAQVELKVVEGLKQGNEALKKLHEIMSVEDVERIMDEAQEGIEYQNEIDELLSGGLTAEDEEDIMNELAEL--ERLELPSVPDTEIP 596
            + LKQQRDKL+QYQK+I   LE+ER  A+QLL+D +K++AKLLLKKK YQE LL +T+ Q+ +++ ++  +EF Q+E+KV+EGL+ GNE L K+H++MS+E+VERI+DE QE +EYQ +IDELL+G  T EDE+ I+ EL+ +  E++ELP VP   +P
Sbjct:   21 LQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQIELPEVPSEPLP 179

The following BLAST results are available for this feature:

BLAST of TCONS_00065725 vs. Swiss-Prot (Human)

BLAST of TCONS_00065725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHMP6	2.118e-40	54.72	Charged multivesicular body protein 6 OS=Homo sapi...	[more]

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TCONS_00065725 (transcript) - C. hemisphaerica