TCONS_00065741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065741
Unique NameTCONS_00065741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065741 ID=TCONS_00065741|Name=TCONS_00065741|organism=Clytia hemisphaerica|type=transcript|length=685bp
ATGAAGAAGATTCTTCGCAGTAGCCGAGTCAGTCCACCATCACCATCACC
CTCTGCATCTGGCAAGCTCAATACAAGCATAGAAGAAATTCAAACATGCC
GTCCATCGCATTGCATCACAGATCATAAAAAGGACCGTTTTAACTGTACC
GAATGCATGAGAAGTGTACATTACTCCTGCACTGAACTTCCAGCTTATTA
TATACAGCTTATCAAAGATAAAAAGAAGGGCATCAAGTTTATTTGCATAA
ACTGTGTCGAAATGTCAAAGAATATCGCCAACAAGTATCCTTCTACAAGT
CAACAagtcaaatcattaaaaatagACGTTACGAACTGTGAAAATATCAT
AAAGGTGAAAGCagaaaaggagaaagaaattCTCAAGAAATGTGAAGCTA
GCAAGACTGAAGctgattcaaagaaaaaagaacttgcagaactgaagaaa
aaaatggacAAGAATCCTGCACTCCATACTTTGGAGTACGTCGAACAAAA
AAATGGATGCGAACATGGAGAAGTTCAAAGAGGATGTAGAAACACTGATC
AAAACTGAgctaaaattcattttaaataaGTCGTACGCTGACGCTACTAA
GATCTCGGGAACAtccgaatcaaaacaaacaacaatGAAGGAAGCAATTC
GTGAAGCATGGCGAGAGGAGGACGTGGAAGAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00065741-protein

>TCONS_00065741-protein ID=TCONS_00065741-protein|Name=TCONS_00065741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MKKILRSSRVSPPSPSPSASGKLNTSIEEIQTCRPSHCITDHKKDRFNCT
ECMRSVHYSCTELPAYYIQLIKDKKKGIKFICINCVEMSKNIANKYPSTS
QQVKSLKIDVTNCENIIKVKAEKEKEILKKCEASKTEADSKKKELAELKK
KMDKNPALHTLEYVEQKNGCEHGEVQRGCRNTDQN
Run BLAST on NCBI

transcript from alignment at scaffold_443:211727..212411

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065741 ID=TCONS_00065741|Name=TCONS_00065741|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at scaffold_443:211727..212411 (Clytia hemisphaerica)
GTTCTCTTCCACGTCCTCCTCTCGCCATGCTTCACGAATTGCTTCCTTCa
ttgttgtttgttttgattcggaTGTTCCCGAGATCTTAGTAGCGTCAGCG
TACGACttatttaaaatgaattttagcTCAGTTTTGATCAGTGTTTCTAC
ATCCTCTTTGAACTTCTCCATGTTCGCATCCATTTTTTTGTTCGACGTAC
TCCAAAGTATGGAGTGCAGGATTCTTgtccatttttttcttcagttctgc
aagttcttttttctttgaatcagCTTCAGTCTTGCTAGCTTCACATTTCT
TGAGaatttctttctccttttctGCTTTCACCTTTATGATATTTTCACAG
TTCGTAACGTctatttttaatgatttgactTGTTGACTTGTAGAAGGATA
CTTGTTGGCGATATTCTTTGACATTTCGACACAGTTTATGCAAATAAACT
TGATGCCCTTCTTTTTATCTTTGATAAGCTGTATATAATAAGCTGGAAGT
TCAGTGCAGGAGTAATGTACACTTCTCATGCATTCGGTACAGTTAAAACG
GTCCTTTTTATGATCTGTGATGCAATGCGATGGACGGCATGTTTGAATTT
CTTCTATGCTTGTATTGAGCTTGCCAGATGCAGAGGGTGATGGTGATGGT
GGACTGACTCGGCTACTGCGAAGAATCTTCTTCAT

Coding sequence (CDS) from alignment at scaffold_443:211727..212411

>TCONS_00065741 ID=TCONS_00065741|Name=TCONS_00065741|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_443:211727..212411 (Clytia hemisphaerica)
TCAGTTTTGATCAGTGTTTCTACATCCTCTTTGAACTTCTCCATGTTCGC
ATCCATTTTTTTGTTCGACGTACTCCAAAGTATGGAGTGCAGGATTCTTg
tccatttttttcttcagttctgcaagttcttttttctttgaatcagCTTC
AGTCTTGCTAGCTTCACATTTCTTGAGaatttctttctccttttctGCTT
TCACCTTTATGATATTTTCACAGTTCGTAACGTctatttttaatgatttg
actTGTTGACTTGTAGAAGGATACTTGTTGGCGATATTCTTTGACATTTC
GACACAGTTTATGCAAATAAACTTGATGCCCTTCTTTTTATCTTTGATAA
GCTGTATATAATAAGCTGGAAGTTCAGTGCAGGAGTAATGTACACTTCTC
ATGCATTCGGTACAGTTAAAACGGTCCTTTTTATGATCTGTGATGCAATG
CGATGGACGGCATGTTTGAATTTCTTCTATGCTTGTATTGAGCTTGCCAG
ATGCAGAGGGTGATGGTGATGGTGGACTGACTCGGCTACTGCGAAGAATC
TTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041181XLOC_041181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065741-exon-scaffold_443-1491911889:211727..212411TCONS_00065741-exon-scaffold_443-1491911889:211727..212411Clytia hemisphaericaexon
TCONS_00065741-exon-scaffold_443-1510915933:211727..212411TCONS_00065741-exon-scaffold_443-1510915933:211727..212411Clytia hemisphaericaexon
TCONS_00065741-exon-scaffold_443-1575043694:211727..212411TCONS_00065741-exon-scaffold_443-1575043694:211727..212411Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065741-proteinTCONS_00065741-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:211727..212411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.54652	3.85212	5.40097	5.94451	1.20614	1.03254	0.287472	1.07651	0.942114	0.855771	1.51024	1.14169	1.58623	1.49288	1.1427	1.70755	0.895227	1.26167	1.02999	0.414544	1.58538	1.05449	1.0255	1.47618	1.0403	1.21411	1.1242	2.29047	0.579081	1.43284
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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