TCONS_00065760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065760
Unique NameTCONS_00065760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065760 ID=TCONS_00065760|Name=TCONS_00065760|organism=Clytia hemisphaerica|type=transcript|length=3300bp
acgtcacttcttaGCGTTATATTGGCCTTTGACGTTGTTGTAAGCGCCGG
CGTAAAAaacatatataaaaaatatacaaaacggcgttaatatttttttt
acatttcttttttgaaaatttgaattagcTCAAGAGGTGTAAAAATTAAT
GGAGAGGGTTGGGAAGAAGTgaatttacaaaataattttttcctctATCC
CTTCTCATTTGCGTGATATGCGGCTCTAATCGAAACCCGGTCAAAACTAG
CTCTGGCCTTAGCTCTGAGGCCGAggttaaattagggccgactaaaaaag
ggccattAAAGTAGGAAGTAAGTTCTTGTTTGAGTCTCAGGTAATGTAAA
AAAGTTATTATGCAAAGGGATATCTCTCCTAAAATCAAGAAGCAATTTGG
CTCAGTAAGAAGCGCTGAATAATTCATCAtcttttcacttttaaaaaaag
atagaaatCTAGGGAACAGAAAAGGGGTATGAAGGGATGATCttcaggaa
aaaaaaacaaattttcaactTCAGATCATTTTGTAGATAAGACTAATTTC
GAAAGAAGAAAACTATTTCTTGATGAAAAGAGGAATTGCTACAGAGTACA
CAGACTAGAACCGTGGATATTTTACCTAGCCTAACACCACCAGAATGGGT
ACAGGGGCTAGTAAACGCAATATATCATGTCCTGTATGTACTCAGGCAAA
TTTGACGAATAAGGATTTTGTCGAACATTATCGAAAAGCTCATAACCGGA
AGTGTTCAAAATGCGGGCTATCCGGATTCGAAACAGAAGAATCAATGTAC
AGACATTACGATCAGCAACACAATAAGATGAATACCGGTGGATTCCTCTG
TTGGAAATGTGCGGAAACCTTTACAGACGAGTCAGGATTAATGCAACATT
TGAAATCCGAACATAATTTATGTTTAAACATGTCGAAACTTTCGTTAAGA
AGTAATGGTGAAAAACCGAGTTGCTCCGAGTGCGGTAAAGTGAAGAAAAA
CTCGGAAAGACTTCAAAAACATGTGGAAAAGAATCATCGATTTGTTTGTC
AGAAGTGTGACTCAAAACTACATTTTACTACGTTGAAAGAACTGTTAAAC
CACGGCGAAGAAGCACACGGATCATTGTTTCAGTGTCCAATCAAATGCAC
TAAAAAGTTCTCCAACGTAGACGATTTTTTACAACATTTATTGAAAGAAC
ACAATTTTGCTTTTGTGTCAAGTCCGAATCACAAAGTTGACGACAAACAT
ATCTGCCCACAATGTAACGAGACCTTAAAAGCAAATGAGATATTTGACCA
CGTGACTCAGAACCATATCGATGTAAAACCACAAGTTTATAAAATCAAGT
GTCCGAAATGTGAAGACAATGATGCAGAATTCGAGACTTCGGACAAGCTA
ATAGATCATATGAGGGAAGCGCATGATTTCNATGCAGAATTTGAGACTTC
GGACAAGCTAATAGACCATATGAAAGAAGCACATGATTTTGCATCTAAGG
TTAACTTGaaagcaacaaaaacaaatgcGGGCAATAAAAGAGTGAAAGAA
AGAAATCAGATTTTACCAAAGGTTGGTGATCGTGTTTTAGCAATGTGGGA
GGTCTCCATGTGGCAATATTTTCATGCAACAATTAAGAAGAAAATAGAAG
GTCAGTTGAGATATGAGATTGATTGGGATGATGGAGATACAACAGGTCGT
TTTGTGAATTACAGTAATCTTGCAGTTGATCGAGCACCAATAGCTCATGA
AATTGGTGTCGGTAGCATCATCTTATTTTCACAAGGTCAATATAGAGCAG
GACAAACACAGCTCACTGGTGGAATGAGaTGGCATCAAGGTCGTATCACG
TCCATCACCAAACAACAAAACGGTGGCACCCTTTACAGTGGTGTACACAC
AAAGACAGAAGCTGATGGAAAATTCTCCACATACAAAGGTTACTCTTATG
AATTTCATAATCTGTATTTAAACGATTTGAGAGTTGGGccgaatgttttt
gatttgctGGATGATGATGAAGTCTCCGATGGGGAATGTGATGGAGTAGT
TGATGCTGGTGATGTAGATGTCTACTTCTCATGTTTCGGAAATGATGGAG
ATAATGCATACAGTCCGAAAGCAGTTGCAGATGAGCTGAAAAGTAAAGGA
ATCTCGGTGATTCAGAGTAAAGATTTGAGCAATGAACTTGATGCAGAAGC
ACGCTTGAATTCAATGAAACACGCTAACCTGATGATGAAGAAAGCCAAGG
TCTTTGTAGCGTGCATTAGTGATCAGTACACGCAAAACCAGACGTGTCGC
ATGGAATTCCAGTTTGCCAAATCAACCTTGAAGAAGCCAGTTGTTCCAAT
TGTGTTTGGCGAAGGAAGAGAATGGCAGCTCTCTGTTGTCGGAATGTTAA
TCAGTGGTGAGCTGTACATCGAAATCAAAGAGAAATGCGATAGAGAAGCA
AAAATCCAAAGTATGCTGACATCAATCTCTTCACATTTGGATCTATCAAA
AGTCAGCAATAATGGTGATGGAAACACAGTATCTGGTGGCGTTGATGTGG
TGGATAACTCTAAACCACCTGACATTTTCATATCATACTGTTGGACAAAT
TCAACCATGGCTTTCCAAAGCAGTCAAATACCAAAAGCAGTTGGAAGTGA
GTATGCTGACCCCCGTctcattaaaaagaaaattgacggGCATGGCTTTA
CCACATGGTTAGACATAGAACAACTGAAATCAGGTGATCAGGGGGTTGGA
ATGTTCGAGCAGTTAGCAAACGCACTGAAAGATACCAAAATGGTGGTGGC
ATTCATTAGTGATGAGTATGCTAACAGTGTAAACTGCCGAATGGAATTTC
AATTCGCTTTTCGAACGATACAAAAACCAATTCTACCAGTCGTTGTCGGA
ACAGGCGAAAAATGGAAACAGTCGGTTGTCGGGATTATGATCGGTGTCAA
CGACGGTTTAGAGCCAATCAGTTTACaggaaatcaaatcaaatgaagATT
TCGACCAATCATTGAACAgtattatgaaaaaaatcagcgATATTTTAGAC
AAAGACACTATCCCATTGGACCAAGCACCTGAACGGAAATCGAAGAAACC
GAAAGTCGGCGATCACATAATTTCTCATCACGTGGGCCATTGTTATTATA
CGGCCACTGTAGCGGAATATAACGCTTCGACTATGGAATATACGGTCACG
TGGGATGATGGAGATACTTCAGGGCGTGTTCAAAAGTATGATCAGGTAAG
AGTCGCCACTTACAttatttcactttcattttcacaaaTTATGTTTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00065760-protein

>TCONS_00065760-protein ID=TCONS_00065760-protein|Name=TCONS_00065760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp
MGTGASKRNISCPVCTQANLTNKDFVEHYRKAHNRKCSKCGLSGFETEES
MYRHYDQQHNKMNTGGFLCWKCAETFTDESGLMQHLKSEHNLCLNMSKLS
LRSNGEKPSCSECGKVKKNSERLQKHVEKNHRFVCQKCDSKLHFTTLKEL
LNHGEEAHGSLFQCPIKCTKKFSNVDDFLQHLLKEHNFAFVSSPNHKVDD
KHICPQCNETLKANEIFDHVTQNHIDVKPQVYKIKCPKCEDNDAEFETSD
KLIDHMREAHDFXAEFETSDKLIDHMKEAHDFASKVNLKATKTNAGNKRV
KERNQILPKVGDRVLAMWEVSMWQYFHATIKKKIEGQLRYEIDWDDGDTT
GRFVNYSNLAVDRAPIAHEIGVGSIILFSQGQYRAGQTQLTGGMRWHQGR
ITSITKQQNGGTLYSGVHTKTEADGKFSTYKGYSYEFHNLYLNDLRVGPN
VFDLLDDDEVSDGECDGVVDAGDVDVYFSCFGNDGDNAYSPKAVADELKS
KGISVIQSKDLSNELDAEARLNSMKHANLMMKKAKVFVACISDQYTQNQT
CRMEFQFAKSTLKKPVVPIVFGEGREWQLSVVGMLISGELYIEIKEKCDR
EAKIQSMLTSISSHLDLSKVSNNGDGNTVSGGVDVVDNSKPPDIFISYCW
TNSTMAFQSSQIPKAVGSEYADPRLIKKKIDGHGFTTWLDIEQLKSGDQG
VGMFEQLANALKDTKMVVAFISDEYANSVNCRMEFQFAFRTIQKPILPVV
VGTGEKWKQSVVGIMIGVNDGLEPISLQEIKSNEDFDQSLNSIMKKISDI
LDKDTIPLDQAPERKSKKPKVGDHIISHHVGHCYYTATVAEYNASTMEYT
VTWDDGDTSGRVQKYDQVRVATYIISLSFSQIMF
Run BLAST on NCBI

transcript from alignment at scaffold_444:77542..84151-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065760 ID=TCONS_00065760|Name=TCONS_00065760|organism=Clytia hemisphaerica|type=transcript|length=6610bp|location=Sequence derived from alignment at scaffold_444:77542..84151- (Clytia hemisphaerica)
ACGTCACTTCTTAGCGTTATATTGGCCTTTGACGTTGTTGTAAGCGCCGG
CGTAAAAAACATATATAAAAAATATACAAAACGGCGTTAATATTTTTTTT
ACATTTCTTTTTTGAAAATTTGAATTAGCTCAAGAGGTGTAAAAATTAAT
GGAGAGGGTTGGGAAGAAGTGAATTTACAAAATAATTTTTTCCTCTATCC
CTTCTCATTTGCGTGATATGCGGCTCTAATCGAAACCCGGTCAAAACTAG
CTCTGGCCTTAGCTCTGAGGCCGAGGTTAAATTAGGGCCGACTAAAAAAG
GGCCATTAAAGTAGGAAGTAAGTTCTTGTTTGAGTCTCAGGTAATGTAAA
AAAGTTATTATGCAAAGGGATATCTCTCCTAAAATCAAGAAGCAATTTGG
CTCAGTAAGAAGCGCTGAATAATTCATCATCTTTTCACTTTTAAAAAAAG
ATAGAAATCTAGGGAACAGAAAAGGGGTATGAAGGGATGATCTTCAGGAA
AAAAAAACAAATTTTCAACTTCAGATCATTTTGTAGATAAGACTAATTTC
GAAAGAAGAAAACTATTTCTTGATGAAAAGAGGAATTGCTACAGAGTACA
CAGACTAGAACCGTGGATATTTTACCTAGCCTAACACCACCAGAATGGGT
ACAGGGGCTAGTAAACGCAATATATCATGTCCTGTATGTACTCAGGCAAA
TTTGACGAATAAGGATTTTGTCGAACATTATCGAAAAGCTCATAACCGGA
AGTGTTCAAAATGCGGGCTATCCGGATTCGAAACAGAAGAATCAATGTAC
AGACATTACGATCAGCAACACAATAAGATGAATACCGGTGGATTCCTCTG
TTGGAAATGTGCGGAAACCTTTACAGACGAGTCAGGATTAATGCAACATT
TGAAATCCGAACATAATTTATGTTTAAACATGTCGAAACTTTCGTTAAGA
AGTAATGGTGAAAAACCGAGTTGCTCCGAGTGCGGTAAAGTGAAGAAAAA
CTCGGAAAGACTTCAAAAACATGTGGAAAAGAATCATCGATTTGTTTGTC
AGAAGTGTGACTCAAAACTACATTTTACTACGTTGAAAGAACTGTTAAAC
CACGGCGAAGAAGCACACGGATCATTGTTTCAGTGTCCAATCAAATGCAC
TAAAAAGTTCTCCAACGTAGACGATTTTTTACAACATTTATTGAAAGAAC
ACAATTTTGCTTTTGTGTCAAGTCCGAATCACAAAGTTGACGACAAACAT
ATCTGCCCACAATGTAACGAGACCTTAAAAGCAAATGAGATATTTGACCA
CGTGACTCAGAACCATATCGATGTAAAACCACAAGTTTATAAAATCAAGT
GTCCGAAATGTGAAGACAATGATGCAGAATTCGAGACTTCGGACAAGCTA
ATAGATCATATGAGGGAAGCGCATGATTTCNATGCAGAATTTGAGACTTC
GGACAAGCTAATAGACCATATGAAAGAAGCACATGATTTTGCATCTAAGG
TTAACTTGAAAGCAACAAAAACAAATGCGGGCAATAAAAGAGTGAAAGAA
AGAAATCAGATTTTACCAAAGGTTGGTGATCGTGTTTTAGCAATGTGGGA
GGTCTCCATGTGGCAATATTTTCATGCAACAATTAAGAAGAAAATAGAAG
GTCAGTTGAGATATGAGATTGATTGGGATGATGGAGATACAACAGGTTCG
TTAATACCCAGCTGGCACACAACGTCGTTTCAGCGTTCATCTAATGTTCA
CAACGTCCATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCAGT
TGGGTAAACTTCCTTTTACGTCTACCTTAATATCATTTTTGTGTGTGATT
TAACCATCGATGATTTAACTCTGACAAAATGCCAGGATTCCTGGTGAAAA
ACTATTTTAGTTACTTTCCTTTGCAACTTTGTCTGTCAACGCCTTATCAA
GGGTAGCTTACATCAGCTGGAAAAAACAACTATAGCATTCCAGTCCTGTT
ATTTCATTTGAACCTAATAGTGTGGTCGTGTTACAAAAAAACAGGCTGTT
TGTAGGAAAAAAATAAGATCTAGCTGAAACTTTCTCCAGACCTTCTCTAT
AGGATGCTTATACCTCAGGAAAAATTCCCCTAAAATCCCACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAACTCGAGATATTTCATGCGCAAGTTCCACTTTTCGCCACACTTTGGT
CAAAATTGACCATAAATAGCATCTTCTGCGTGAATTATCTTGAGTTAGGT
AATGGAATCGGCTATACCCGTTTAAAAGTCTTCTATATAGTTTTTCGAGA
GCTTTCGAATGGTATACTTGATGATGTCTGAAAATGAGTTTGAAATTTTC
AAAAAATTTCGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATGTCCCAT
AAAAGGGATGTTCCACCAGTGGGATTTTAGGGGAATTTTTCCTGAGGCAT
AACCATCCTATAGAGAAGGTCTGGAGAAAGTTTCAGCTAGATCATATTGT
TTTCCCGTAAATTATGCTAAACAACCACACTATAATGTATTGGACGACCT
TCCAGTTGTTGTCTCGAACGCCCACGCCCCAGAGCAGTGTTTATTGGGTG
GGTGGCTGACCCCCAGCGGTCTCCTCCAAAATTGCCATGAAGATAGGGGG
ATGTTTGAACTTGTTGTCCGATGAATTTTTACCTTGATTGTAGATCAAAT
ATTGAAGGTGAGTTTGTTTCACCCCTCTAACTATATCTTGTCTTTTTAGG
TCGTTTTGTGAATTACAGTAATCTTGCAGTTGATCGAGCACCAATAGCTC
ATGAAATTGGTGTCGGTAGCATCATCTTATTTTCACAAGGTCAATATAGA
GCAGGACAAACACAGCTCACTGGTGGAATGAGGTAAAAATCTTGCTGAAT
TGTTTAAAATTTTGAACGGAGTCTCCCAGTTGGTAGGGGTATAAGATGGC
ACGAAGAATAGATCCCAACTTTCATAGATCTTTTCCAAGGCAGAAATTTC
AAATAGATGAATACCCTTTTCTTACCGATAGCTCAATTATTTAAGAGACG
CCTGGAAATTCAAACACTAAGACGTTTGCATTTAAGTCTTATAGTTGTTT
GCGCGCTCTAAACCTCGAGTGAAGGTACTGGGTTTGAGTTTATTCTTTGT
TTATGAGAAAAACAATGCAATGACTTCACACATTTGAAATTTGATATCAA
TCCTTCCTCGAAAACTTTAAAAAATTCTTCTCAGGCTTTAAAGGTTGATA
AGTGAACACATTCGAGAATAAATCTTCATTACCAATCCGGAATCTCTTTT
CTTTTTTCATAGATGGCATCAAGGTCGTATCACGTCCATCACCAAACAAC
AAAACGGTGGCACCCTTTACAGTGGTGTACACACAAAGACAGAAGCTGAT
GGAAAATTCTCCACATACAAAGGTTACTCTTATGAATTTCATAATCTGTA
TTTAAACGATTTGAGAGTTGGGCCGAATGTTTTTGATTTGCTGGATGATG
ATGAAGTCTCCGATGGGGAATGTGATGGAGTAGTTGATGCTGGTGATGTA
GATGTCTACTTCTCATGTTTCGGAAATGATGGAGATAATGCATACAGTCC
GAAAGCAGTTGCAGATGAGCTGAAAAGTAAAGGTATGATTTGCTTTCACA
ACGCCGTTAAGCCAACGCTGTGTCCTAGCTTGGTAAAATGTCTCGAAAAT
GCCTAAAGATACTTTAACAGATAAAACGTGAATCAGACCATTTTTCACTA
ACGAAAAGTCAATAATGAGAGTCCAACCCTGGGGGAGGTACTTGGACAAA
ATAGGTACTGGGCGGTAAGCATACCTTTTTTTCACACCTCAAAGTTCTCT
CTAAAGGTTTATAAACTCATCTCATCTCTACTTTTTCCTCAAAAAGAATC
ACGATTTTCGTAAAGAATTGGACTAAAACTTGCCTCTCCAAGGTTCCAGA
AAAGTTTAAACTTTCCTTGTCGACTTTCAATATTTGACTGGAGCGTGCCA
AAAATTCCACCACTACTAAATCACTAGCTTAAAAAGCCTGATTTGATTCT
TTTTCTTTCTGATCTTTAGGAATCTCGGTGATTCAGAGTAAAGATTTGAG
CAATGAACTTGATGCAGAAGCACGCTTGAATTCAATGAAACACGCTAACC
TGATGATGAAGAAAGCCAAGGTCTTTGTAGCGTGCATTAGTGATCAGTAC
ACGCAAAACCAGACGTGTCGCATGGAATTCCAGTTTGCCAAATCAACCTT
GAAGAAGCCAGTTGTTCCAATTGTGTTTGGCGAAGGAAGAGAATGGCAGC
TCTCTGTTGTCGGTATGTCATTAGGTTCCATTTCTCGTGCCTATGGCTTC
TCTTACTTCTTTTGTGAACTAGACATTAAGTGATTGAATTCCTAATGTGA
GATTCACAGTAAAAACTGAACTGTGAAGACTTATTGTAGTTTCATTCAGA
AGTGGTTTTTATGCGAGAAAAGAAAACTATTTTCCAATCACCAATGATCT
CGAATGAGAGCTGAGTCAATGAACAATACGAGGTCTAAAGGCCAGTCTCT
ACTTGCACGCGCTTCTATCGCACTTTTTGGCTTTGACACATTTCAATTTT
TTCAACCGCTACGTCAGATTGCACCAATGGAGTTGCTTCATTTTTCTTTT
GACCAATAACTGGTAAATTGATACATCATTAAATTTCTCTTGTCTATATT
CTGATATAGCTGTATAACACCGTAAACTTTGGTTTGGATACAAAAGTGTT
CAACGTTTATTTTAGGAATGTTAATCAGTGGTGAGCTGTACATCGAAATC
AAAGAGAAATGCGATAGAGAAGCAAAAATCCAAAGTATGCTGACATCAAT
CTCTTCACATTTGGATCTATCAAAAGTCAGCAATAATGGTGATGGAAACA
CAGTATCTGGTGGCGTTGATGTGGTGGATAACTCTAAACCACGTAAGAAT
GCTTAAATTAAGTTTACATAATTCTTAAAAAATGTTTATTTGATTGTACA
ATGGACAAATTTACCTAAACTACGTAATCCTAATCGGGTCCTAAGCTCGG
GTGTCGACTCGACTCGACTCGTGACGGCACAACTCGGGTGACAAAGAAAA
TAATAATAATTCATTTTGCTAATTTTTTGAAGAAAATTCCAACATCTAGT
AATTGTCGAAAATGTAATGAGACAGCAGTATATTTAAGAATTTTAATGAA
AGCAATGCTGTTAGCTAAATTGTAGGCGTTGCTTTATCTGCTAAAATACA
TTAGAATAAGGTTATCATTTGTTTTTAGCTGACATTTTCATATCATACTG
TTGGACAAATTCAACCATGGCTTTCCAAAGCAGTCAAATACCAAAAGCAG
TTGGAAGTGAGTATGCTGACCCCCGTCTCATTAAAAAGAAAATTGACGGG
CATGGCTTTACCACATGGTTAGACATAGAACAACTGAAATCAGGTGATCA
GGGGGTTGGAATGTTCGAGCAGTTAGCAAACGCACTGAAAGATACCAAAA
TGGTGGTGGCATTCATTAGTGATGAGTATGCTAACAGTGTAAACTGCCGA
ATGGAATTTCAATTCGCTTTTCGAACGATACAAAAACCAATTCTACCAGT
CGTTGTCGGAACAGGCGAAAAATGGAAACAGTCGGTTGTCGGGATTATGA
TCGGTGTCAACGACGGTTTAGAGCCAATCAGTTTACAGGAAATCAAATCA
AATGAAGATTTCGACCAATCATTGAACAGTATTATGAAAAAAATCAGCGA
TATTTTAGACAAAGACACTATCCCATTGGACCAAGCACCTGAACGGAAAT
CGAAGAAACCGAAAGTCGGCGATCACATAATTTCTCATCACGTGGGCCAT
TGTTATTATACGGCCACTGTAGCGGAATATAACGCTTCGACTATGGAATA
TACGGTCACGTGGGATGATGGAGATACTTCAGGGCGTGTTCAAAAGTATG
ATCAGGTAAGAGTCGCCACTTACATTATTTCACTTTCATTTTCACAAATT
ATGTTTTAAA

Coding sequence (CDS) from alignment at scaffold_444:77542..84151-

>TCONS_00065760 ID=TCONS_00065760|Name=TCONS_00065760|organism=Clytia hemisphaerica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_444:77542..84151- (Clytia hemisphaerica)
ATGGGTACAGGGGCTAGTAAACGCAATATATCATGTCCTGTATGTACTCA
GGCAAATTTGACGAATAAGGATTTTGTCGAACATTATCGAAAAGCTCATA
ACCGGAAGTGTTCAAAATGCGGGCTATCCGGATTCGAAACAGAAGAATCA
ATGTACAGACATTACGATCAGCAACACAATAAGATGAATACCGGTGGATT
CCTCTGTTGGAAATGTGCGGAAACCTTTACAGACGAGTCAGGATTAATGC
AACATTTGAAATCCGAACATAATTTATGTTTAAACATGTCGAAACTTTCG
TTAAGAAGTAATGGTGAAAAACCGAGTTGCTCCGAGTGCGGTAAAGTGAA
GAAAAACTCGGAAAGACTTCAAAAACATGTGGAAAAGAATCATCGATTTG
TTTGTCAGAAGTGTGACTCAAAACTACATTTTACTACGTTGAAAGAACTG
TTAAACCACGGCGAAGAAGCACACGGATCATTGTTTCAGTGTCCAATCAA
ATGCACTAAAAAGTTCTCCAACGTAGACGATTTTTTACAACATTTATTGA
AAGAACACAATTTTGCTTTTGTGTCAAGTCCGAATCACAAAGTTGACGAC
AAACATATCTGCCCACAATGTAACGAGACCTTAAAAGCAAATGAGATATT
TGACCACGTGACTCAGAACCATATCGATGTAAAACCACAAGTTTATAAAA
TCAAGTGTCCGAAATGTGAAGACAATGATGCAGAATTCGAGACTTCGGAC
AAGCTAATAGATCATATGAGGGAAGCGCATGATTTCNATGCAGAATTTGA
GACTTCGGACAAGCTAATAGACCATATGAAAGAAGCACATGATTTTGCAT
CTAAGGTTAACTTGAAAGCAACAAAAACAAATGCGGGCAATAAAAGAGTG
AAAGAAAGAAATCAGATTTTACCAAAGGTTGGTGATCGTGTTTTAGCAAT
GTGGGAGGTCTCCATGTGGCAATATTTTCATGCAACAATTAAGAAGAAAA
TAGAAGGTCAGTTGAGATATGAGATTGATTGGGATGATGGAGATACAACA
GGTCGTTTTGTGAATTACAGTAATCTTGCAGTTGATCGAGCACCAATAGC
TCATGAAATTGGTGTCGGTAGCATCATCTTATTTTCACAAGGTCAATATA
GAGCAGGACAAACACAGCTCACTGGTGGAATGAGATGGCATCAAGGTCGT
ATCACGTCCATCACCAAACAACAAAACGGTGGCACCCTTTACAGTGGTGT
ACACACAAAGACAGAAGCTGATGGAAAATTCTCCACATACAAAGGTTACT
CTTATGAATTTCATAATCTGTATTTAAACGATTTGAGAGTTGGGCCGAAT
GTTTTTGATTTGCTGGATGATGATGAAGTCTCCGATGGGGAATGTGATGG
AGTAGTTGATGCTGGTGATGTAGATGTCTACTTCTCATGTTTCGGAAATG
ATGGAGATAATGCATACAGTCCGAAAGCAGTTGCAGATGAGCTGAAAAGT
AAAGGAATCTCGGTGATTCAGAGTAAAGATTTGAGCAATGAACTTGATGC
AGAAGCACGCTTGAATTCAATGAAACACGCTAACCTGATGATGAAGAAAG
CCAAGGTCTTTGTAGCGTGCATTAGTGATCAGTACACGCAAAACCAGACG
TGTCGCATGGAATTCCAGTTTGCCAAATCAACCTTGAAGAAGCCAGTTGT
TCCAATTGTGTTTGGCGAAGGAAGAGAATGGCAGCTCTCTGTTGTCGGAA
TGTTAATCAGTGGTGAGCTGTACATCGAAATCAAAGAGAAATGCGATAGA
GAAGCAAAAATCCAAAGTATGCTGACATCAATCTCTTCACATTTGGATCT
ATCAAAAGTCAGCAATAATGGTGATGGAAACACAGTATCTGGTGGCGTTG
ATGTGGTGGATAACTCTAAACCACCTGACATTTTCATATCATACTGTTGG
ACAAATTCAACCATGGCTTTCCAAAGCAGTCAAATACCAAAAGCAGTTGG
AAGTGAGTATGCTGACCCCCGTCTCATTAAAAAGAAAATTGACGGGCATG
GCTTTACCACATGGTTAGACATAGAACAACTGAAATCAGGTGATCAGGGG
GTTGGAATGTTCGAGCAGTTAGCAAACGCACTGAAAGATACCAAAATGGT
GGTGGCATTCATTAGTGATGAGTATGCTAACAGTGTAAACTGCCGAATGG
AATTTCAATTCGCTTTTCGAACGATACAAAAACCAATTCTACCAGTCGTT
GTCGGAACAGGCGAAAAATGGAAACAGTCGGTTGTCGGGATTATGATCGG
TGTCAACGACGGTTTAGAGCCAATCAGTTTACAGGAAATCAAATCAAATG
AAGATTTCGACCAATCATTGAACAGTATTATGAAAAAAATCAGCGATATT
TTAGACAAAGACACTATCCCATTGGACCAAGCACCTGAACGGAAATCGAA
GAAACCGAAAGTCGGCGATCACATAATTTCTCATCACGTGGGCCATTGTT
ATTATACGGCCACTGTAGCGGAATATAACGCTTCGACTATGGAATATACG
GTCACGTGGGATGATGGAGATACTTCAGGGCGTGTTCAAAAGTATGATCA
GGTAAGAGTCGCCACTTACATTATTTCACTTTCATTTTCACAAATTATGT
TTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041197XLOC_041197Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065760-proteinTCONS_00065760-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065760-exon-scaffold_444-1575043694:82457..84151TCONS_00065760-exon-scaffold_444-1575043694:82457..84151Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1575043694:80670..80802TCONS_00065760-exon-scaffold_444-1575043694:80670..80802Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1575043694:79920..80239TCONS_00065760-exon-scaffold_444-1575043694:79920..80239Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1575043694:79240..79482TCONS_00065760-exon-scaffold_444-1575043694:79240..79482Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1575043694:78610..78786TCONS_00065760-exon-scaffold_444-1575043694:78610..78786Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1575043694:77542..78273TCONS_00065760-exon-scaffold_444-1575043694:77542..78273Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1510915933:82457..84151TCONS_00065760-exon-scaffold_444-1510915933:82457..84151Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1510915933:80670..80802TCONS_00065760-exon-scaffold_444-1510915933:80670..80802Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1510915933:79920..80239TCONS_00065760-exon-scaffold_444-1510915933:79920..80239Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1510915933:79240..79482TCONS_00065760-exon-scaffold_444-1510915933:79240..79482Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1510915933:78610..78786TCONS_00065760-exon-scaffold_444-1510915933:78610..78786Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1510915933:77542..78273TCONS_00065760-exon-scaffold_444-1510915933:77542..78273Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1491911889:82457..84151TCONS_00065760-exon-scaffold_444-1491911889:82457..84151Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1491911889:80670..80802TCONS_00065760-exon-scaffold_444-1491911889:80670..80802Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1491911889:79920..80239TCONS_00065760-exon-scaffold_444-1491911889:79920..80239Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1491911889:79240..79482TCONS_00065760-exon-scaffold_444-1491911889:79240..79482Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1491911889:78610..78786TCONS_00065760-exon-scaffold_444-1491911889:78610..78786Clytia hemisphaericaexon
TCONS_00065760-exon-scaffold_444-1491911889:77542..78273TCONS_00065760-exon-scaffold_444-1491911889:77542..78273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:77542..84151 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0246288	0.0447705	0.0418289	0.0127143	29.0839	20.7564	14.299	14.5746	10.059	14.9908	8.80555	8.29454	1.69744	1.599	0.540948	0.847956	2.31109	2.83489	2.39555	1.16435	4.35769	3.41012	1.9477	2.3491	2.88362	4.14629	10.8679	12.236	0.114655	0.0648972
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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