TCONS_00065769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065769
Unique NameTCONS_00065769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065769 ID=TCONS_00065769|Name=TCONS_00065769|organism=Clytia hemisphaerica|type=transcript|length=711bp
tcagatatatagaatatacaaaaaaatatgcAAATTTGAAATGGAAAATG
GAAGATAAGTTAAGCAAACCTCTTGAAGGAGACCACAACGATGAAGAAAC
AGATAGCAATGAAGAGATTCTAGAACCAGGCGTTCAAACTCCTACCCCTC
CTCAACACCACAAACACATGTCAACTGAAACACTATTCGAGAATGAGAAA
ATCTCTCAGATTGCAACAGCTTATTCATGGCCAGAATTTCAACGTTTTGT
AAATGGTAGAACAGGCTGTTTACCTCAACAAAAAGGAATTCTATTCAACA
CTGATGAAATTCAATCTACTAATGTTATTATCAATTGGTATACGAGAAAT
GAGGAGAGCATTTTTCCTGCTGCCAAATCAAGATTATGGCGTGACGATTC
AGAGCTCGAAGGGATGCCTTACATCTATTGTGGAAAGAATGCTTATTTCG
CTCAAGGAATGGATGGGAAATTCACAAATGAGGAAATAAACATGTTGGCA
GAGGAATCCTACGTTGTCAGAAAAATCATTGTTTTCCCTGGGTTCAAGTT
GTTTGAAGACAGGTGGAAGAAGAAGGAGGTCGAAAGGCTAGAATCGCTAA
TTCGCAAGCAATTGGAGCAAAATGATAAGCAGTTAGACAAGAAAGTCGTT
TTCCTTATCAATTTATCAAAAATGGACCGATCTCTTGAAAAACCTGTCAA
TCCATCCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00065769-protein

>TCONS_00065769-protein ID=TCONS_00065769-protein|Name=TCONS_00065769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
RYIEYTKKYANLKWKMEDKLSKPLEGDHNDEETDSNEEILEPGVQTPTPP
QHHKHMSTETLFENEKISQIATAYSWPEFQRFVNGRTGCLPQQKGILFNT
DEIQSTNVIINWYTRNEESIFPAAKSRLWRDDSELEGMPYIYCGKNAYFA
QGMDGKFTNEEINMLAEESYVVRKIIVFPGFKLFEDRWKKKEVERLESLI
RKQLEQNDKQLDKKVVFLINLSKMDRSLEKPVNPSK
Run BLAST on NCBI

transcript from alignment at scaffold_444:196190..197795-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065769 ID=TCONS_00065769|Name=TCONS_00065769|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at scaffold_444:196190..197795- (Clytia hemisphaerica)
TCAGATATATAGAATATACAAAAAAATATGCAAATTTGAAATGGAAAATG
GAAGATAAGTTAAGCAAACCTCTTGAAGGAGACCACAACGATGAAGAAAC
AGATAGCAATGAAGAGATTCTAGAACCAGGCGTTCAAACTCCTACCCCTC
CTCAACACCACAAACACATGTCAACTGAAACACTATTCGAGAATGAGAAA
ATCTCTCAGATTGCAACAGCTTATTCATGGCCAGAATTTCAACGTTTTGT
AAATGGTAGAACAGGCTGTTTACCTCAACAAAAAGGAATTCTATTCAACA
GTAAGAGTTTTTTATTGTATAGTATAGTCTCTTTACCCCGAATCTCTATA
ACTCGAATGTCTGCAGGTTTTCTGGTCCCTTCAGTTGATAATGCCTTATA
ACCTTACTCTATAACTCAAAATTCTTTTAACTCGAAAAAAATTGTGTTCG
TCCTGCGTGTTTGGCTGACGGAAACCCTACTTGTCCATGAAGTAACGAAA
ACTTTTATTTGAATCAGTGTTAACACTCATTGCAATAAAAATACCTGATT
TTTTTTTCATACTCATATTGCAATCCCTATTATAGAAATAGTGCCCCCCC
CCTTTTGAAGACGGAGTAACCGAGAAAAATTTGGATTTTTAGTAGAAGGA
ACCAACCCAGGAGGACACTTTTCATAATAGACGTAAAACTTTGGCCACCT
TTTAAATGTTTAGTGATTTGCAAGTTTGATTTTTAAGGGCATTTGGTCCA
TTCATTTCTCTTTTACAATTTGACTAACCTTTTCGATATCCAATTTAGCT
GATGAAATTCAATCTACTAATGTTATTATCAATTGGTATACGAGAAATGA
GGAGAGCATTTTTCCTGCTGCCAAATCAAGATTATGGCGTGACGATTCAG
AGCTCGAAGGGATGCCTTACATCTATTGTGGAAAGAATGCTTATTTCGCT
CAAGGAATGGATGGGAAATTCACAAATGAGGTGATTCATTTTGCTTTTAG
CCAGAATGGATATGATTTGAAAGCCCTTTAATCATTATAAAGTTTTTCAA
AAGTTAATTTTGGAAATTCTTGTGCTTTTTTAAAGATATAAAAACTTTTC
CTTTTATTTATTTTCATGTTCTTTATTGCGAATTTAAATTTAAAATTTTG
TTTTTCCGTTCCAGGAAATAAACATGTTGGCAGAGGAATCCTACGTTGTC
AGAAAAATCATTGTTTTCCCTGGGTTCAAGGTGTGAACTTGCTTGTAGTT
TAATCATGATGCTTTTTAGCCCTGCTGACCTAGCCAAAAAGGGATACACG
ATGATGTTTCATTGGTTATGGTATTTTTCTACAACCTCGCTAGACTTTGG
CTTTTCAAACATTTTGGGTGTAACGAACATCATTTCTCTCTTCACCATTC
AAACTAATCATGAAATTTTATATGAAATATATATTACTTTCAGTTGTTTG
AAGACAGGTGGAAGAAGAAGGAGGTCGAAAGGCTAGAATCGCTAATTCGC
AAGCAATTGGAGCAAAATGATAAGCAGTTAGACAAGAAAGTCGTTTTCCT
TATCAATTTATCAAAAATGGACCGATCTCTTGAAAAACCTGTCAATCCAT
CCAAGG

Coding sequence (CDS) from alignment at scaffold_444:196190..197795-

>TCONS_00065769 ID=TCONS_00065769|Name=TCONS_00065769|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_444:196190..197795- (Clytia hemisphaerica)
AGATATATAGAATATACAAAAAAATATGCAAATTTGAAATGGAAAATGGA
AGATAAGTTAAGCAAACCTCTTGAAGGAGACCACAACGATGAAGAAACAG
ATAGCAATGAAGAGATTCTAGAACCAGGCGTTCAAACTCCTACCCCTCCT
CAACACCACAAACACATGTCAACTGAAACACTATTCGAGAATGAGAAAAT
CTCTCAGATTGCAACAGCTTATTCATGGCCAGAATTTCAACGTTTTGTAA
ATGGTAGAACAGGCTGTTTACCTCAACAAAAAGGAATTCTATTCAACACT
GATGAAATTCAATCTACTAATGTTATTATCAATTGGTATACGAGAAATGA
GGAGAGCATTTTTCCTGCTGCCAAATCAAGATTATGGCGTGACGATTCAG
AGCTCGAAGGGATGCCTTACATCTATTGTGGAAAGAATGCTTATTTCGCT
CAAGGAATGGATGGGAAATTCACAAATGAGGAAATAAACATGTTGGCAGA
GGAATCCTACGTTGTCAGAAAAATCATTGTTTTCCCTGGGTTCAAGTTGT
TTGAAGACAGGTGGAAGAAGAAGGAGGTCGAAAGGCTAGAATCGCTAATT
CGCAAGCAATTGGAGCAAAATGATAAGCAGTTAGACAAGAAAGTCGTTTT
CCTTATCAATTTATCAAAAATGGACCGATCTCTTGAAAAACCTGTCAATC
CATCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041203XLOC_041203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065769-exon-scaffold_444-1575043694:197496..197795TCONS_00065769-exon-scaffold_444-1575043694:197496..197795Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1575043694:196816..196997TCONS_00065769-exon-scaffold_444-1575043694:196816..196997Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1575043694:196566..196631TCONS_00065769-exon-scaffold_444-1575043694:196566..196631Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1575043694:196190..196352TCONS_00065769-exon-scaffold_444-1575043694:196190..196352Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1510915933:197496..197795TCONS_00065769-exon-scaffold_444-1510915933:197496..197795Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1510915933:196816..196997TCONS_00065769-exon-scaffold_444-1510915933:196816..196997Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1510915933:196566..196631TCONS_00065769-exon-scaffold_444-1510915933:196566..196631Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1510915933:196190..196352TCONS_00065769-exon-scaffold_444-1510915933:196190..196352Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1491911889:197496..197795TCONS_00065769-exon-scaffold_444-1491911889:197496..197795Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1491911889:196816..196997TCONS_00065769-exon-scaffold_444-1491911889:196816..196997Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1491911889:196566..196631TCONS_00065769-exon-scaffold_444-1491911889:196566..196631Clytia hemisphaericaexon
TCONS_00065769-exon-scaffold_444-1491911889:196190..196352TCONS_00065769-exon-scaffold_444-1491911889:196190..196352Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065769-proteinTCONS_00065769-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:196190..197795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.95696	6.36772	4.59717	2.7623	8.14098	6.28478	8.11496	7.34369	3.1831	4.19086	2.21398	3.29381	1.98192	2.18483	2.18907	3.27304	1.86321	4.4057	1.54269	0.837398	1.75976	1.3537	5.81772	5.95942	5.54127	4.21928	1.46224	1.45235	5.50954	7.62983
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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