TCONS_00065851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065851
Unique NameTCONS_00065851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065851 ID=TCONS_00065851|Name=TCONS_00065851|organism=Clytia hemisphaerica|type=transcript|length=455bp
TAATGATTTTATAATTGGGGAGCAATTATCTCCTcagatttctctttttt
ttactctctcattttttttcattctgtgTTGAAATATTGTAGAGCAAGGA
GCTCAATTCTTTATTGACATGTTGTCAGTCAGAGTCAAACTTAAACTTTA
TTAAATTGGTAAATGGAATTTGCTGAATTGAGTATTTAATAATAATTTGC
ATTTCACTGTGGATTTACCCAGCTGGTAATCCACTCATTTCACTGGTCAT
TTTCACAGCAATCACATTGGGCCAGCCGtttgaACGCAAAGATATCAATC
CTTCAATCAATATCTTGTTACAAACCCTCTCAAGTGTTTTGCACTATTCC
AcagatgggatgatagatatttgcCTGCTCTATAAGCTTTTTAgtgtggg
cgtctgctaataagccgtcggaaatgggcaacaaggtaataaatgaaGCT
TCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_447:3298..4192+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065851 ID=TCONS_00065851|Name=TCONS_00065851|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at scaffold_447:3298..4192+ (Clytia hemisphaerica)
TAATGATTTTATAATTGGGGAGCAATTATCTCCTcagatttctctttttt
ttactctctcattttttttcattctgtgTTGAAATATTGTAGAGCAAGGA
GCTCAATTCTTTATTGACATGTTGTCAGTCAGAGTCAAACTTAAACTTTA
TTAAATTGGTAAATGGAATTTGCTGAATTGAGTATTTAATAATAATTTGC
ATTTCACTGTGGATTTACCCAGCTGGTAATCCACTCATTTCACTGGTCAT
TTTCACAGCAATCACATTGGGCCAGCCGGTAAGCTTTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTTAGTAATTTTTTCTAAGATTCTATCAta
cttttattctttcataTCATTTTCTGTTCACTCAAATTGTTTCTCAAATT
AGTCTAAGTTTCATAAATCAATTTATCAATTTattaatttaattttgtca
tttagtcactattttcatttattttatcaaTTCAAATACTTATTATTcct
taatttattttcattcagtttgaACGCAAAGATATCAATCCTTCAATCAA
TATCTTGTTACAAACCCTCTCAAGTGTTTTGCACTATTCCAcagatggga
tgatagatatttgcCTGCTCTATAAGCTTTTTAgtgtgggcgtctgctaa
taagccgtcggaaatgggcaacaaggtaataaatgaaGCTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041251XLOC_041251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065851-exon-scaffold_447-1491911889:3298..3575TCONS_00065851-exon-scaffold_447-1491911889:3298..3575Clytia hemisphaericaexon
TCONS_00065851-exon-scaffold_447-1510915933:3298..3575TCONS_00065851-exon-scaffold_447-1510915933:3298..3575Clytia hemisphaericaexon
TCONS_00065851-exon-scaffold_447-1575043694:3298..3575TCONS_00065851-exon-scaffold_447-1575043694:3298..3575Clytia hemisphaericaexon
TCONS_00065851-exon-scaffold_447-1491911889:4016..4192TCONS_00065851-exon-scaffold_447-1491911889:4016..4192Clytia hemisphaericaexon
TCONS_00065851-exon-scaffold_447-1510915933:4016..4192TCONS_00065851-exon-scaffold_447-1510915933:4016..4192Clytia hemisphaericaexon
TCONS_00065851-exon-scaffold_447-1575043694:4016..4192TCONS_00065851-exon-scaffold_447-1575043694:4016..4192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:3298..4192 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.70264	2.11865	0.57135	2.02376	8.9224	6.66069	7.81699	6.3533	6.17091	4.9264	4.85652	6.43276	1.40963	0.803496	0.78107	0.776139	0.341893	0.665804	1.48981	0.481276	0.550026	0.831055	0.490637	0.938021	1.39357	2.21107	1.32177	1.05523	0.897518	0.535026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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