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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065893 ID=TCONS_00065893|Name=TCONS_00065893|organism=Clytia hemisphaerica|type=transcript|length=2978bpRun BLAST on NCBI protein sequence of TCONS_00065893-protein >TCONS_00065893-protein ID=TCONS_00065893-protein|Name=TCONS_00065893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MSNRSPTAKYRVTLLCAKNVAKHDFFRLPDPFARIKVDGSGQCHTTKSLKRun BLAST on NCBI transcript from alignment at scaffold_448:204064..213850+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065893 ID=TCONS_00065893|Name=TCONS_00065893|organism=Clytia hemisphaerica|type=transcript|length=9787bp|location=Sequence derived from alignment at scaffold_448:204064..213850+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:204064..213850+ >TCONS_00065893 ID=TCONS_00065893|Name=TCONS_00065893|organism=Clytia hemisphaerica|type=CDS|length=2415bp|location=Sequence derived from alignment at scaffold_448:204064..213850+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065893 vs. Swiss-Prot (Human)
Match: SMUF2 (E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1) HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0 Identity = 380/808 (47.03%), Postives = 508/808 (62.87%), Query Frame = 2
Query: 95 MSN----RSPTAKYRVTLLCAKNVAKHDFFRLPDPFARIKVDGSGQCHTTKSLKSTVDPEWKEHYDLLLAKNESFTISVWNQRKVHKGKGAGFLGCVKVTPHAIDRLKGQGYQRMNLQAVNNEEXXXXXXXXXXXXXXAKENAETFWYSPFQQPMDVDGTTLPPGWEERRTPAGRVQYVNKMTRAVQWDKPTRSAYDVNSEGRSNVEIPTATIGGVISEASPEQPHRQRLITTKSDNGRLSSSFVLKGVKDQERHRSTKSKSGHSKKVAIDKDSKVNTAAPNSNEASNSINTSSPQGATAADRPLVDRQKYYMNRNLIHRVAADNFDRKTTTQGQVYFVNRITGQTTWNDPSLSDLASGVIDLGPLPDGWEVRTTPSGKSYFVDHNTRTTQFADPRLTQSQSPRELKPRKQEKTERVEELPLYKRDLVYKLKSFREDLHALQPAHGHCCIEVRRNSVFRDSFQQVRQLKSKDLRKRLMIKFKSEIGLDYGGIAREWLYLLSQEMFNPQYGLFKNSKDAQYTLEINPDSGVNPEHLSFFHFVGRVVGLAVFHGHYLDGGFTLPFYKQLLGKRLTIADLESVDPQLFQGLSWLLENNVSSMDFSPPTFAVEHQSFGQTTKHNLKEDGEAIQVTDDNKKEYVQLYVNYRLLYGIEKQFKAFVKGFTELVPLHLIKMFDEREMELMICGLGKIDLKDWKNYTNLKHCTKDHNIVLWFWEVVEKYDEEQRARLLQFVTGSSRIPIQGFKALQGAAGQNGPRLFTINVTKMDPNGLPKAHTCFNKLDIPNYESKEILYEKLTWAVEETCGFNIE 2506
MSN R+ K R+T+LCAKN+ K DFFRLPDPFA++ VDGSGQCH+T ++K+T+DP+W +HYDL + K++S TISVWN +K+HK +GAGFLGCV++ +AI+RLK GYQR++L + ++D+ ++ + D D LP GWEERRT +GR+QY+N +TR QW++PTR A + +S GR + + E +P T + G+ S + + +RHR+ S++ + + + T + + G + P V R +N + + ++ + T G+VYFV+ T + DP L S + V + + + S P + TE + +P YKRDLV KLK R++L QP GHC IEV R +F +S++QV +++ KDL KRLMIKF+ E GLDYGG+AREWLYLLS EM NP YGLF+ S+D YTL+INPDS VNPEHLS+FHFVGR++G+AVFHGHY+DGGFTLPFYKQLLGK +T+ D+E VDP L L W+LEN+++ + TF VEH ++G+ +H LK +G++I V ++NKKEYV+LYVN+R L GIE QF A KGF E++P HL+K FDE+E+EL+ICGLGKID+ DWK T LKHCT D NIV WFW+ VE +DEE+RARLLQFVTGSSR+P+QGFKALQGAA GPRLFTI+ N LPKAHTCFN++DIP YES E LYEKL A+EETCGF +E
Sbjct: 1 MSNPGGRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKSDSVTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCKLGPNDNDTVRGQIVVSLQSRDRIGTGGQVVDCSRLFDND---LPDGWEERRTASGRIQYLNHITRTTQWERPTRPASEYSSPGRP--------LSCFVDENTPISG------TNGATCGQSSDPRLAERRVRSQRHRNYMSRTHLHTPPDLPEGYEQRTT-----QQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPP-GWEIRNTATGRVYFVDHNNRTTQFTDPRL-----------------------SANLHLVLNRQNQLKDQQQQQVVSLCP--------DDTECL-TVPRYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGV--LDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAA---GPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 748 The following BLAST results are available for this feature:
BLAST of TCONS_00065893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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