TCONS_00065898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065898
Unique NameTCONS_00065898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065898 ID=TCONS_00065898|Name=TCONS_00065898|organism=Clytia hemisphaerica|type=transcript|length=4259bp
GTTTCCTTTTGGTTTTCATTCACGGTCTCCTTTGAATCCGTTTTCTTTGG
TTCAACAGATAATGACATGTTGCTCTTACTTCTCCGAGAAGATCTTCTCG
CTGATAAGTGTGATTTGTGAGAACCTTTTGAAATCGGGATATCGGAAGCG
TCTCCATCTAAATCGGATTTTGAACGATCGGATTTTGAGCCATGTTTTAC
ACCGTCCGACCAGTCGCCAGATGACGAATCCTTCTTCGATTCAATTGATA
TCTCTCGACTTGCTGATCTCGATCGTCTTGATGTTCCAGATCTCACATCC
AAATGGACCACAGAAGCTGGTTCTTGAATAGCTTCAAAAGTCTTAAAGAA
TGAATTTCCATCGCATCTTGAAATTAAAACTTCAGTCGATTCAGTAGACG
TATGCGAATCTGATTTTCGTCTGGAATTTTTGCGTGATCTTTCTCGACTG
GTGCCGGATCTTGAACTATAATAACGTGAATCACCGGATCTGGAATAAGA
TGTTCCGCTCCATTGACCGGACCTTGAGTACGAACTTGCGCCCGAATAAC
TGGACCTCGAATAACAGCTTGCGCTCGAGTGAAAAGACCTCGATCTTCGA
CTAGAATGACCAGATCGCGAAAATGATCTACTGCGCCTATGCACAGACCT
CGATCCTCGACTGGAACGGTCAGATCGCGAAAATGATCTACTGCGCCTAT
GCACAGACCTTGATCCTCGACTAGAAAAGTCAGATCGCGAAAACGATCTA
CTGCTACTACGCACAGAGCTCGCTCTTCTACTGGAATGGCCAGATCGCGA
ATAAGATCTACTGCGTCCACGCACAGAGCTCGCTCTTCTGCTGGAATGGC
CAGATCGCGAATAAGATCTACTACGACCACGTACAGAGCTCGTTCTTCGA
CTGGAATGGCGAGATCGCGAATATGATCTACCCCGACTACGCACAGACCT
CGATCTTCGACTGGATTGTTTAGACTTCAATCCCATCTGTCTGCTTGAAT
GGCGAGATCGTGATAAAGATTTATTTGACATCATGTCAAACGATGAAGCG
GATCTTGACACTTTCGTCTTTGAGCCTGATCTCTTGGATGATTTAGAAGG
CTTTCGTCCTGGACTCAACAAATGAGCGCTTAACTCTCCCTTCGAATAAC
TTGATTTTCGTGAACGCAAACGTCCTCGCGAGCGGCCACGGCTTTTCGAC
TTTTTGCGGTCAGACTTCCCTCGATGCACTGATCTACTTAATTTCTTGTC
ATTGTTATCTACTGATTGGTCAGAGTTTTCCACCTTGATGGTGGGAAGTG
CTAGGTAGGATGCTGATTCGCACCAGTCCGAACAATCTTGGTTGCTATGC
GATGATTGGTGTGTGGAAAAATGTGATCGCCCCACGTGACTTTCCGATTT
CGATCGTCGACTTTTTTTCCCGATGTCCGCAAATAAATACGACATTTGAA
TGGATTGACATGAATCTACACGTCTCCTTCTCGAGTCGGCCGATTTTGAT
CTCTTATTGCCGCTTCTCTTTGACCAATCAATAGAACTGCCTGGTCGTTG
CGAATCTTTTCTTGATTTACCACCTTTCCTTCTATAGCTTTTGCtcgatt
ggccagctttcgaaTAAGAGCCTCCATACAATGAAAATTCTTCTGAAATA
GATTTCAGTTGACTGTTTTGTCTCCTTCTACCGCGATGGAAACCCGTAGG
TGCCGGACTGGTCGTTGCCGTATAAACGACAGCATCTCCGAGTGGTTTTA
GGCTCATCGCTCGGTTCTTTCTGGTGAAATCATCACTCATTGTTTTTGGA
AGTTCTTTTGTTGCTTTCTCCGTAGAAATACTTAACGATCTTTCAGATAC
GGACTTGCTTGAATCATGGTGCGATGGACTTCTGTGACTTGCTGATTTAT
GAGTTTTCGAGTTCGATCTTCTATGGCTACCGGACCTGTGAGATTTTGAG
TGTGACCTATCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTGTGAGA
TCTTGAGCGCGAACTTCTACGGCTAACCGAACTATGAGATCTTGAATGTG
ACTTCTCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTGTGAGATCTT
GAGCGCGATCTCTCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTGTG
AGATCTTGAATGTGACTTCTCCGCTTTTGACGCGTCTGTACGGCTGACAG
ACCTGTGAGATCTTGAGCGCGATCTCTCCGCTTTTGACGCGTCTGTACGG
CTGACAGACCTGTGAGATCTTGAATGTGACTTCTCCGCTTTTGATGCGTC
TGTACGGCTGACAGACCTATGCGATCTTGAATGTGATCTCTCCGCTCTTG
ACGCGTCCGTACGGCTGACAGACCTATGAGATCTTGAATTTGACCTCTCC
GCTTTTGACGCGTCCGTACGGCTGACAGACCTATGCGATCTTGAATGTGA
TCTCTCCGCTCTTGACGCGTCCGTACGGCTGACAGACCTATGCGATCTTG
AATGCGACCTCTCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTATGC
GATCTTGAATGTGATCTCTCAGCTCTTGACGCGTCTGTACGGCTGACCGA
CCTATGCGATCTTGAATACGACTTCTCCGCTTTTGACGCGTCTGTACGGC
TGACAGACCTGTGAGATCTTGAGCGCGAACTTCTACGGCTAACCGACCTA
TGAGATCTTGAATTTGACCTCTCCGCTTTTGACGCGTCTGTACGGCTGAC
AGACCTATGCGATCTTGAATGTGATCTCTCCGCTCTTGACGCGTCCGTAC
GGCTGACAGACCTGTGAGATCTTGAGCGCGAACTTCTACGGCTAACCGAC
CTATGAGATCTTGAATGTGACCTCTCCGCTTTTGATGCGTCTGTACGGCT
GACAGACCTGTGAGATATTGAGCGCGAACTTCTACGGCTGACAGACCTAT
GAGATCTTGAATGTGATCTCTCCGCTTTTGATGCGTCCGTACGGCTGACA
GACCTATGTGATCCCGCCTTTGATACACTTCTATGGCTGACAGACCTGTG
CGATCCTGACATTGATATATCAACTTTTGATTTACTTCGTTTGCTCAGAG
ATTCATGTGATATTGAGAGTAAATGTTGAGCATCTCCACCGTGACTTTCC
GTGACAACTATGGAGGGACCTTTATGACTTGATCTATGCGAAACTGATAG
AGACCTGCTTGTTCCCGCTTCAGCATGTGAAAGGTCAGCTCTCGTTGAAC
TTTGGCGGCTTTTGGAGATGGAGCGATCTCTTACCCTGGAATCTTTTGAA
TGTCGATCAGTTCGCGAGCTGTGACTTTTAGATGTCCCGTCAGGTCTTAA
ACTATGACCTTTAGATACTCCGTCATATCTTGAGCTATGACTTTTAGATG
TCTCCTCAGGTTTTGAAATATGGATTTTAGATGTACCAGAAAGCCTTGAG
CTATGGCTTTTAGATGGTCCGACATGTCTTGAACTATGACTTTTAGATGG
TTCCTTAAGTCTTGAGATATGGCTTTTAGATGTGCCATCATGTCTTGGGC
TCCGACTTGTAGATGACCGATCGGGCCTTTGGCTATGGCTTTTAGATGTT
CCTTCATGTCTTGAGCTATGACTTCTCGATGCACTAGCATGTCTTGACCT
ATGACTTTTAGATGGTTCCTTAAGTCTTGAGATATGGCTTTTAGATGTAC
CATCATGTCTTGGGCTCCGACTTGTAGATGCTCCGTCAGTTCTTGGGCTA
TGACTTCTGGATGATCGATCTGGTCTTGAGCTATAACCTTTAGATATTCT
ATCCGTTCTTGAGCTATGACTTTTAGATGCATGTGAATGTGATCGATCAG
ATGTTCGGCTTAATGCGCCAGATTTATGATGACTTGTCGCGCTTGCTGAT
TTTGTAAAAGAAGCCTTACTAAGCGAGCCCTCCCATGCCGAAGCAAACTC
ACTACTATCCTCGTCTTCATTTTCATGAGCTGTTGCTATGACTGAAAAGT
ATTTCTTCTCAAGCGGTTTGGTGGTTGACTTTGTATCGGATAACGCACTC
TTCGAACGGGCGCTTTTACTGACTGATTTCGAACTTTTATGTGATGTATC
TCTTTTTGAATGTTTGCTTCGCTCAGATACGAATAATTCGACAGAACCAA
CCGATCGTGAGCTTTTATTTCCCAACTTCGATGAATCATCTGAACTTTTG
CTCGATAAGTCAGACTCTGGTCGGCTTTTCTCTAACCTCTTGCTGTCTTG
AGATTTGCC
Run BLAST on NCBI

transcript from alignment at scaffold_448:232635..236926+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065898 ID=TCONS_00065898|Name=TCONS_00065898|organism=Clytia hemisphaerica|type=transcript|length=4292bp|location=Sequence derived from alignment at scaffold_448:232635..236926+ (Clytia hemisphaerica)
GTTTCCTTTTGGTTTTCATTCACGGTCTCCTTTGAATCCGTTTTCTTTGG
TTCAACAGATAATGACATGTTGCTCTTACTTCTCCGAGAAGATCTTCTCG
CTGATAAGTGTGATTTGTGAGAACCTTTTGAAATCGGGATATCGGAAGCG
TCTCCATCTAAATCGGATTTTGAACGATCGGATTTTGAGCCATGTTTTAC
ACCGTCCGACCAGTCGCCAGATGACGAATCCTTCTTCGATTCAATTGATA
TCTCTCGACTTGCTGATCTCGATCGTCTTGATGTTCCAGATCTCACATCC
AAATGGACCACAGAAGCTGGTTCTTGAATAGCTTCAAAAGTCTTAAAGAA
TGAATTTCCATCGCATCTTGAAATTAAAACTTCAGTCGATTCAGTAGACG
TATGCGAATCTGATTTTCGTCTGGAATTTTTGCGTGATCTTTCTCGACTG
GTGCCGGATCTTGAACTATAATAACGTGAATCACCGGATCTGGAATAAGA
TGTTCCGCTCCATTGACCGGACCTTGAGTACGAACTTGCGCCCGAATAAC
TGGACCTCGAATAACAGCTTGCGCTCGAGTGAAAAGACCTCGATCTTCGA
CTAGAATGACCAGATCGCGAAAATGATCTACTGCGCCTATGCACAGACCT
CGATCCTCGACTGGAACGGTCAGATCGCGAAAATGATCTACTGCGCCTAT
GCACAGACCTTGATCCTCGACTAGAAAAGTCAGATCGCGAAAACGATCTA
CTGCTACTACGCACAGAGCTCGCTCTTCTACTGGAATGGCCAGATCGCGA
ATAAGATCTACTGCGTCCACGCACAGAGCTCGCTCTTCTGCTGGAATGGC
CAGATCGCGAATAAGATCTACTACGACCACGTACAGAGCTCGTTCTTCGA
CTGGAATGGCGAGATCGCGAATATGATCTACCCCGACTACGCACAGACCT
CGATCTTCGACTGGATTGTTTAGACTTCAATCCCATCTGTCTGCTTGAAT
GGCGAGATCGTGATAAAGATTTATTTGACATCATGTCAAACGATGAAGCG
GATCTTGACACTTTCGTCTTTGAGCCTGATCTCTTGGATGATTTAGAAGG
CTTTCGTCCTGGACTCAACAAATGAGCGCTTAACTCTCCCTTCGAATAAC
TTGATTTTCGTGAACGCAAACGTCCTCGCGAGCGGCCACGGCTTTTCGAC
TTTTTGCGGTCAGACTTCCCTCGATGCACTGATCTACTTAATTTCTTGTC
ATTGTTATCTACTGATTGGTCAGAGTTTTCCACCTTGATGGTGGGAAGTG
CTAGGTAGGATGCTGATTCGCACCAGTCCGAACAATCTTGGTTGCTATGC
GATGATTGGTGTGTGGAAAAATGTGATCGCCCCACGTGACTTTCCGATTT
CGATCGTCGACTTTTTTTCCCGATGTCCGCAAATAAATACGACATTTGAA
TGGATTGACATGAATCTACACGTCTCCTTCTCGAGTCGGCCGATTTTGAT
CTCTTATTGCCGCTTCTCTTTGACCAATCAATAGAACTGCCTGGTCGTTG
CGAATCTTTTCTTGATTTACCACCTTTCCTTCTATAGCTTTTGCtcgatt
ggccagctttcgaaTAAGAGCCTCCATACAATGAAAATTCTTCTGAAATA
GATTTCAGTTGACTGTTTTGTCTCCTTCTACCGCGATGGAAACCCGTAGG
TGCCGGACTGGTCGTTGCCGTATAAACGACAGCATCTCCGAGTGGTTTTA
GGCTCATCGCTCGGTTCTTTCTGGTGAAATCATCACTCATTGTTTTTGGA
AGTTCTTTTGTTGCTTTCTCCGTAGAAATACTTAACGATCTTTCAGATAC
GGACTTGCTTGAATCATGGTGCGATGGACTTCTGTGACTTGCTGATTTAT
GAGTTTTCGAGTTCGATCTTCTATGGCTACCGGACCTGTGAGATTTTGAG
TGTGACCTATCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTGTGAGA
TCTTGAGCGCGAACTTCTACGGCTAACCGAACTATGAGATCTTGAATGTG
ACTTCTCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTGTGAGATCTT
GAGCGCGATCTCTCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTGTG
AGATCTTGAATGTGACTTCTCCGCTTTTGACGCGTCTGTACGGCTGACAG
ACCTGTGAGATCTTGAGCGCGATCTCTCCGCTTTTGACGCGTCTGTACGG
CTGACAGACCTGTGAGATCTTGAATGTGACTTCTCCGCTTTTGATGCGTC
TGTACGGCTGACAGACCTATGCGATCTTGAATGTGATCTCTCCGCTCTTG
ACGCGTCCGTACGGCTGACAGACCTATGAGATCTTGAATTTGACCTCTCC
GCTTTTGACGCGTCCGTACGGCTGACAGACCTATGCGATCTTGAATGTGA
TCTCTCCGCTCTTGACGCGTCCGTACGGCTGACAGACCTATGCGATCTTG
AATGCGACCTCTCCGCTTTTGACGCGTCTGTACGGCTGACAGACCTATGC
GATCTTGAATGTGATCTCTCAGCTCTTGACGCGTCTGTACGGCTGACCGA
CCTATGCGATCTTGAATACGACTTCTCCGCTTTTGACGCGTCTGTACGGC
TGACAGACCTGTGAGATCTTGAGCGCGAACTTCTACGGCTAACCGACCTA
TGAGATCTTGAATTTGACCTCTCCGCTTTTGACGCGTCTGTACGGCTGAC
AGACCTATGCGATCTTGAATGTGATCTCTCCGCTCTTGACGCGTCCGTAC
GGCTGACAGACCTGTGAGATCTTGAGCGCGAACTTCTACGGCTAACCGAC
CTATGAGATCTTGAATGTGACCTCTCCGCTTTTGATGCGTCTGTACGGCT
GACAGACCTGTGAGATATTGAGCGCGAACTTCTACGGCTGACAGACCTAT
GAGATCTTGAATGTGATCTCTCCGCTTTTGATGCGTCCGTACGGCTGACA
GACCTATGTGATCCCGCCTTTGATACACTTCTATGGCTGACAGACCTGTG
CGATCCTGACATTGATATATCAACTTTTGATTTACTTCGTTTGCTCAGAG
ATTCATGTGATATTGAGAGTAAATGTTGAGCATCTCCACCGTGACTTTCC
GTGACAACTATGGAGGGACCTTTATGACTTGATCTATGCGAAACTGATAG
AGACCTGCTTGTTCCCGCTTCAGCATGTGAAAGGTCAGCTCTCGTTGAAC
TTTGGCGGCTTTTGGAGATGGAGCGATCTCTTACCCTGGAATCTTTTGAA
TGTCGATCAGTTCGCGAGCTGTGACTTTTAGATGTCCCGTCAGGTCTTAA
ACTATGACCTTTAGATACTCCGTCATGTCTTGAGCTATGACTTCTAGATG
GTCGATCAGATCTTGAGCTATGACTTTTAGATGTCTCCTCAGGTTTTGAA
ATATGGATTTTAGATGTACCAGAAAGCCTTGAGCTATGGCTTTTAGATGG
TCCGACATGTCTTGAACTATGACTTTTAGATGGTTCCTTAAGTCTTGAGA
TATGGCTTTTAGATGTGCCATCATGTCTTGGGCTCCGACTTGTAGATGAC
CGATCGGGCCTTTGGCTATGGCTTTTAGATGTTCCTTCATGTCTTGAGCT
ATGACTTCTCGATGCACTAGCATGTCTTGACCTATGACTTTTAGATGGTT
CCTTAAGTCTTGAGATATGGCTTTTAGATGTACCATCATGTCTTGGGCTC
CGACTTGTAGATGCTCCGTCAGTTCTTGGGCTATGACTTCTGGATGATCG
ATCTGGTCTTGAGCTATAACCTTTAGATATTCTATCCGTTCTTGAGCTAT
GACTTTTAGATGCATGTGAATGTGATCGATCAGATGTTCGGCTTAATGCG
CCAGATTTATGATGACTTGTCGCGCTTGCTGATTTTGTAAAAGAAGCCTT
ACTAAGCGAGCCCTCCCATGCCGAAGCAAACTCACTACTATCCTCGTCTT
CATTTTCATGAGCTGTTGCTATGACTGAAAAGTATTTCTTCTCAAGCGGT
TTGGTGGTTGACTTTGTATCGGATAACGCACTCTTCGAACGGGCGCTTTT
ACTGACTGATTTCGAACTTTTATGTGATGTATCTCTTTTTGAATGTTTGC
TTCGCTCAGATACGAATAATTCGACAGAACCAACCGATCGTGAGCTTTTA
TTTCCCAACTTCGATGAATCATCTGAACTTTTGCTCGATAAGTCAGACTC
TGGTCGGCTTTTCTCTAACCTCTTGCTGTCTTGAGATTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041293XLOC_041293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065898-exon-scaffold_448-1491911889:232635..236010TCONS_00065898-exon-scaffold_448-1491911889:232635..236010Clytia hemisphaericaexon
TCONS_00065898-exon-scaffold_448-1510915933:232635..236010TCONS_00065898-exon-scaffold_448-1510915933:232635..236010Clytia hemisphaericaexon
TCONS_00065898-exon-scaffold_448-1575043694:232635..236010TCONS_00065898-exon-scaffold_448-1575043694:232635..236010Clytia hemisphaericaexon
TCONS_00065898-exon-scaffold_448-1491911889:236044..236926TCONS_00065898-exon-scaffold_448-1491911889:236044..236926Clytia hemisphaericaexon
TCONS_00065898-exon-scaffold_448-1510915933:236044..236926TCONS_00065898-exon-scaffold_448-1510915933:236044..236926Clytia hemisphaericaexon
TCONS_00065898-exon-scaffold_448-1575043694:236044..236926TCONS_00065898-exon-scaffold_448-1575043694:236044..236926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:232635..236926 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0175199	0.00854232	0	0	0	0.0528082	0.0112623	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.119172	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top