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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065899 ID=TCONS_00065899|Name=TCONS_00065899|organism=Clytia hemisphaerica|type=transcript|length=2033bpRun BLAST on NCBI transcript from alignment at scaffold_448:245097..284170+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065899 ID=TCONS_00065899|Name=TCONS_00065899|organism=Clytia hemisphaerica|type=transcript|length=39074bp|location=Sequence derived from alignment at scaffold_448:245097..284170+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065899 vs. Swiss-Prot (Human)
Match: TOP3A (DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 3.907e-147 Identity = 153/285 (53.68%), Postives = 208/285 (72.98%), Query Frame = 2
Query: 404 ASGLYIIARNYLDVYHYERWNSRMIPDYNEGETFQPDNIEMVQSETRPPPLLTEADLIGLMEKYGIGTDATHAEHIETIKSRQYVGVQNDGTFLPGTLGMGLVEGYDAMGFAMSKPYLRASLEEDLKRICEGQKNKDDVLAEQIRSYREVFIQAKEQVERLDEALSRYFGQPQQVPDEEENEPPMVEIIRKCPKCNSNDMITRKTKENSWMIGCSGYPNCRNSIFLPKFVLNIGKNERRCTKCRPEPVHFVNFEFKRGSVPPTISTRYTGCV-GCDEMLKEILNV 1255
A GL I+ARNYLDVY Y+ W+ +++P Y +G FQP +EMV ET PP LLTEADLI LMEK+GIGTDATHAEHIETIK+R YVG+ D FLPG LGMGLVEGYD+MG+ MSKP LRA LE DLK IC+G+K+K VL +Q++ Y++VFI+A + ++LDEAL++YFG ++ +E+ P M E IRKCP+CN DM+ + K + + C G+P CR++++LP VL ++ C C+P PV+ + +FKRGS+PPT+ + C+ GCD+ L+EIL++
Sbjct: 467 AHGLMILARNYLDVYPYDHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICDGKKDKFVVLRQQVQKYKQVFIEAVAKAKKLDEALAQYFGNGTELAQQEDIYPAMPEPIRKCPQCN-KDMVLKTKKNGGFYLSCMGFPECRSAVWLPDSVLEASRDSSVCPVCQPHPVYRLKLKFKRGSLPPTMPLEFVCCIGGCDDTLREILDL 750 HSP 2 Score: 209.534 bits (532), Expect = 3.907e-147 Identity = 96/142 (67.61%), Postives = 115/142 (80.99%), Query Frame = 3
Query: 3 ELEKTISRKLRINAKEVMKIAEKLYTNGIISYPRTETNIFPQGMNLTPLVENQVADQQWGEFAQRVLNDGGPRPRQGKKTDNAHPPIHPIRHVDNLQGNEKRVYEFIVRHFLACVSKDAQGKETTVEIDIANEKHLVYTSLL 428
ELEK SRKLRINAKE M+IAEKLYT G ISYPRTETNIFP+ +NLT LVE Q D +WG FAQ +L GGP PR G K+D AHPPIHP ++ +NLQG+E+R+YEFIVRHFLAC S+DAQG+ETTVEIDIA E+ + + ++
Sbjct: 331 ELEKLASRKLRINAKETMRIAEKLYTQGYISYPRTETNIFPRDLNLTVLVEQQTPDPRWGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYTNNLQGDEQRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLMI 472 HSP 3 Score: 118.242 bits (295), Expect = 2.884e-27 Identity = 66/144 (45.83%), Postives = 81/144 (56.25%), Query Frame = 2
Query: 1544 GGAENEIVCNCDTNALKLTVRKEGPNQGRQFYKCANNPNKCDFFLWADEE---AVAPXXXXXXXXXXXXXXXXXXXXXXRQRGNQEGQDGGEVMCQCNQLAPIRTVQKEGPNKGKQFYSCSKPRDQGCNFFQWVDEESTNHNQG 1966
G N + CNC A+ LTVRKEGPN+GRQF+KC N C+FFLWAD A P R G G + GN G C C+Q + RTVQK+GPNKG+QF++C+KPR+Q C FFQWVDE + G
Sbjct: 805 AGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKC--NGGSCNFFLWADSPNPGAGGPPALAYRPLGASLGCPPGPGIHLGGFGNPGDGSGSGTSCLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWVDENTAPGTSG 946 The following BLAST results are available for this feature:
BLAST of TCONS_00065899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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