TCONS_00065917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065917
Unique NameTCONS_00065917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065917 ID=TCONS_00065917|Name=TCONS_00065917|organism=Clytia hemisphaerica|type=transcript|length=2305bp
GTCTGCCATGACACGTATTAATGAAGTTATGTcATCAACTAATCTGAAGA
ATAAAGAGAGAAAGCCAAAATGGGTGACGATGAACTAAAGTATCTTATGG
TGGATCGCAGACAAGTGTCTGATCCAGTTGCACATGCAGAATgggcttca
aaaaaattatgcTGGGTTCCAAGCGAAGATCATGGTTTCCTTTCTGCCAG
TATCAAGAAAGAAGATGGGGATAAAGTTACTGTCCAGCTCGATGGAGGAA
AAAGTGCCACCTTCCACAAGGATGATATTCAAAGAATGAACCCCCCAAAA
TTTAATAAAGTTGAAGATATGGCCGACTTAACTTGCTTAAATGAAGCTTC
GGTCTTGAACAACTTGAAAGACAGATATTTCTCTGATTTGATCTATACCT
ATTCTGGTTTGTTCTGTGTTGTTGTCAATCCTTACAAACGACTTCCCATT
TACTCAGAGAAAGTTGTAGCCTTGTACAAAGGCAAAAAGCGACATGAAGT
CCCACCACATGTTTATGCAATTGCTGACTCTGCTTTCAGAAGCATGTTAC
AAGATCGTGAAAATCAATCTATTCTTTGCACAGGAGAATCTGGAGcagga
aaaactgaaaataccaaGAAAGTTATTCAATACTTGACTGCTGTTGCTGG
CCGTAACCAAGGCAAAGTTGATGCTGAGGACAAAACTCAAGGGAAATTGG
AAAACCAACTGCTACAAGCTAATCCAATCCTTGAAGCTTTTGGTAATGCT
AAAACTGTTAAGAATGACAACTCATCTCGATTTGGTAAATTCATCAGAAT
CATGTTTGACAGCTCTGGTTTCATCTGTGGAGCAAACATTGATCAATACT
TGCTGGAAAAAGCGAGAATTGTTCGTCAAGCACCTGAGGAACGTACTTTC
CACATCTTCTACCAATTGTTATTGGGAGCTAGCCCTGAAGTCAAAAaaca
aTTCTTGTTGTTGGAGCCAACTGCTTACAATTTCATGTCCAACGGAACTG
TCTCTCTTGCCAACATGGACGACCGTGCCGAGTTCAAAGCTACTCTTGAA
GCTATGCGTGATATGGGAATCACACAAGAAGAATTGGACCCCATTTTCAA
AGTTATTTCTTCCCTCTTGCTTTTTGGAAACATGGAATTCAAACAAGAAC
GTAAATCAGACCAAGCTACTTTGCCAGACAACACCATTGCTCAAAAGATT
TGCCATCTTTTAGGAATGCCTGTCACTGATTTCACAAAGAGCTTATTGAA
ACCAAGAGTTAAGGTTGGTCGTGAATTCACACAAAAAGCTCAAACCAAAG
CACAATGTGAATTTGCTATTGAAGCCATTTCTAAAGCTACCTATGAACGT
CTGTTCAAGTGGTTGGTTGGTCGCATCaacaaatctttgaacaaaggaAA
ACGTGATGGCAACTCTTTCATTGGTATCTTGGATATTGCtggttttgaga
tttttcaattgaACAGCTTTGAACAACTTTGTATTAACTACACCAACGAG
AAATTGCAACAACTTTTCAACCACACTATGTTTGTTTTGGAACAAGAGGA
GTACCAAAAGGAAGGTATTGATTGGAAATTCATTGATTTCGGGCTGGATC
TCCAACCTACCATTGACCTCATTGAAAAACCAATGGGTCTTTTGGCTCTC
TTGGATGAAGAGTGTTGGTTCCCCAAGGCTACTGACAAATCATTGGTAGA
CAAGTTGAACAAACAACACTTGAAACATCCTAAATACTTGAAGCCTGACT
TCAGATCCAACTCAGACTTCTGTGTCATCCATTATGCTGGACGTGTCGAT
TACTCAGCTACCCAATGGTTGACCAAAAACATGGACCCATTAAATGACAA
CATTGTATCGTTAATGACTCAATCCAAAGATTCATTCATTTCAGGATTAT
GGAAGGATGTTGACAACATTGTCGGTATGAGTGTTGCTGACAGTATGGAT
ACTGCCTTTGGTGCTTCCAGAACCAAAAAGGGAATGTTCAGAACAGTCTC
TCAATTGTACAAGgAACAATTGGCTGGTCTTATGAATACATTGCACAGCA
CCAAACCCAACTTTGTTCGATGTATCATTCCAAATTACGAAAAACGTGCT
GGAAAAATTGACAACCACTTGGTCCTTGATCAATTGAGATGTAATGGTGT
CTTGGAAGGTATCCGTATTTGTCGTCAAGGTTTCCCCAACAGAATCCTCT
TCCAAGAGTTCAGACAGCGTTATGAAATCTTGTGCCCTGGTATTGTACCA
AGAGGATTTATGGACGGACGTAAAGCTGCTCAACAAATGGTATATTCTTT
TTCTT
Run BLAST on NCBI

protein sequence of TCONS_00065917-protein

>TCONS_00065917-protein ID=TCONS_00065917-protein|Name=TCONS_00065917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp
MGDDELKYLMVDRRQVSDPVAHAEWASKKLCWVPSEDHGFLSASIKKEDG
DKVTVQLDGGKSATFHKDDIQRMNPPKFNKVEDMADLTCLNEASVLNNLK
DRYFSDLIYTYSGLFCVVVNPYKRLPIYSEKVVALYKGKKRHEVPPHVYA
IADSAFRSMLQDRENQSILCTGESGAGKTENTKKVIQYLTAVAGRNQGKV
DAEDKTQGKLENQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIMFDSSG
FICGANIDQYLLEKARIVRQAPEERTFHIFYQLLLGASPEVKKQFLLLEP
TAYNFMSNGTVSLANMDDRAEFKATLEAMRDMGITQEELDPIFKVISSLL
LFGNMEFKQERKSDQATLPDNTIAQKICHLLGMPVTDFTKSLLKPRVKVG
REFTQKAQTKAQCEFAIEAISKATYERLFKWLVGRINKSLNKGKRDGNSF
IGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQKEGI
DWKFIDFGLDLQPTIDLIEKPMGLLALLDEECWFPKATDKSLVDKLNKQH
LKHPKYLKPDFRSNSDFCVIHYAGRVDYSATQWLTKNMDPLNDNIVSLMT
QSKDSFISGLWKDVDNIVGMSVADSMDTAFGASRTKKGMFRTVSQLYKEQ
LAGLMNTLHSTKPNFVRCIIPNYEKRAGKIDNHLVLDQLRCNGVLEGIRI
CRQGFPNRILFQEFRQRYEILCPGIVPRGFMDGRKAAQQMVYSFS
Run BLAST on NCBI

transcript from alignment at scaffold_448:554441..560716+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065917 ID=TCONS_00065917|Name=TCONS_00065917|organism=Clytia hemisphaerica|type=transcript|length=6276bp|location=Sequence derived from alignment at scaffold_448:554441..560716+ (Clytia hemisphaerica)
GTCTGCCATGACACGTATTAATGAAGTTATGTGTTTATTATATCATCTGA
GCCAGATCTAATGTCTCAATTTTTCTCTCTTCGCACtggattttttcgat
ttttagctACGACGAAATtgacactttcgatttcgcttCTCTCCCTCTTC
TCGTTACGGCTCTGTTTACATTGCTAAATACTGATCACACTCACTAAAAT
TAAATTGACTTTGTTTACGAATGACAGCGAACAAAAAGCTTTAGCGTTTT
CTCATCCGTTTGGATCTCtaatttgttattttctttgatttaggGAATCT
TTTCTTAGAAGTAAATATGTTCCACATTATGTGATGaaactaaacaaaat
tttgtcCAAAATCGAAAGTTTCATTTAGAGACTTTGAGATTTTGCGGCTC
TGTGGTATCTTTAATACGTCTGCCCATAGATTACCGAACCACGTGATCAG
GATGTATctgaccaatcagattgcaaAATGGGTTGGGCTATTTTGAAAGG
CGTTCGGTCTTATGTTTAGCATACACAGTGCTGGAGTGATCGCTCTACAG
ACAGCAGCACATATCATTTTCTCGACTGTCGACtgataaatttttgtttt
atgtttagcATCAACTAATCTGAAGAATAAAGAGAGAAAGCCAAAATGGG
TGACGATGAACTAAAGTATCTTATGGTGGATCGCAGACAAGTGTCTGATC
CAGTTGCACATGCAGAATgggcttcaaaaaaattatgcTGGGTTCCAAGC
GAAGATCATGGTTTCCTTTCTGCCAGTATCAAGAAAGAAGATGGGGATAA
AGTTACTGTCCAGCTCGATGGAGGAAAAAGTGCCACCTTCCACAAGGATG
ATATTCAAAGAATGAACCCCCCAAAATTTAATAAAGTTGAAGATATGGCC
GACTTAACTTGCTTAAATGAAGCTTCGGTCTTGAACAACTTGAAAGACAG
ATATTTCTCTGATTTGATCTATGTAAGTGTGCTCAATCAGCACCCAGTTC
TTTTTTATTGTCTATTAATATTACTCTGTAATTCTAGTACAGTTTACACT
TTTCCCAAATTCCTGCCCGGAAATCGaactaaacaaatattttttgctcC
TGCATTTTGTTGAGAGAAAGTACAGTTGACAGCAAGTTTAGACAGATTCT
GTGTCAAAGTCATTTTCACCTATTGTATCAGCTAccttatcagccctttt
tacaccggcgcTAATTTAACGGCGGCCCCTTTTTACGCCGACCCTTATTA
CTACGCCACAGCCTGATTTTAGGCTTATGCCAATTATTGGGGCCGTAAAT
Aaccccaaaatttttagaacagctatttatgcttcaattttatacatcaa
aatataatttttcagtataaactgttgaaaaatccattgaaaatcactga
tttttgcaaagttttagaTATGCAGTataacaatggataatttttttatc
ttgaaatcATATTCCNCCCTGTTGCCTTTATATCGATAAAAAGCGCTCTC
TTCTCTCTTTTCACACAAATCTCATCTTTTTATATCATGAtgcgttttct
ttttaaaaatgacatCTCATGTCTGCCATGACACGTATTAATGAAGTTAT
GCGTGTTTATTATATCATCTGAGCCAAATCTAATGCGATCTAATGTCTCA
ATTTTTCTCTCTTCGCACTGGATTNCAAAATCCTTTAACTagagaaaaat
ggtaaaaaattaacgttacttttaagtaaaatttgcaaaattttggccct
tttcacACCGCCCCTTTTAATGccagcccttattacgccaagagcctaaa
aataacgTCAAAAAGCATAAATAGCATAGCATAAATTCTTAATCATCCAA
AATAAGGATTTAACAGCCTTTCCAAGCAATAATAGACTTAATTGTGTCGT
TGCAATTACTATCCAGAAGCCAGCTTTATTTGAGTCAGAACGTAAAGCTC
TAAATTGTGACTCTAACATACTTGATAGCAAAAAGTGtttatttctttaa
tttagACCTATTCTGGTTTGTTCTGTGTTGTTGTCAATCCTTACAAACGA
CTTCCCATTTACTCAGAGAAAGTTGTAGCCTTGTACAAAGGCAAAAAGCG
ACATGAAGTCCCACCACATGTTTATGCAATTGCTGACTCTGCTTTCAGAA
GCATGTTACAAGATCGTGAAAATCAATCTATTCTTTGCACGTAAGTCTAA
TTATTCAGATTTCTTTTTAAGAGGTTTATTGTTGTATCATGTCTCTGAAA
ACTTTTTAGAACTCAACTGTACCAGGCAATAGTTATTAAAATGAAATGGT
GCACTTCACTTAATCTCTTGAATTCACGCCAGCATTTTGAAGATGAACTA
AAATGGCCCAAACAGACCCAAAATTCCTTATTTCTGTCAANAAGTGTCTG
ATCCAGTTGCACATGCAGAATgggcttcaaaaaaattatgcTGGGTTCCA
AGCGAAGATCATGGTTTCCTTTCTGCCAGTATCAAGAAAGAAGATGGGGA
TAAAGTTACTGTCCAGCTCGATGGAGGAAAAAGTGCCACCTTCCACAAGG
ATGATATTCAAAGAATGAACCCCCCAAAATTTAATAAAGTTGAAGATATG
GCCGACTTAACTTGCTTAAATGAAGCTTCGGTCTTGAACAACTTGAAAGA
CAGATATTTCTCTGATTTGATCTATGTAAGTGTGCTCAATCAGCACCCAG
TTCTTTTTTATTGTCTATTAATATTACTCTGCAATTCTAGTACAGTTTAC
ACTTTTCCCAAATTCCTGCCCGGAAATCaaactaaacaaatattttttgc
tcCTGCATTTTGTTGAGAGAAAGTACAGTTGACAGCAAGTTTAGACAGAT
TCTGTGTCAAAGTCATTTTCACCTTTTAACGCCGGCgctaatttaacgcc
ggcccctttttacgccggcccttattactaTGCCACAGCCTGATTTTAGG
CTTATGCCAAttattagggccgtaaataaccCCAAAATCTTTAGAACAGC
TATTTATGCTTCAATTTTATACATCAAAATATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTTTTTCAGAG
GAGAATCTGGAGcaggaaaaactgaaaataccaaGAAAGTTATTCAATAC
TTGACTGCTGTTGCTGGCCGTAACCAAGGCAAAGTTGATGCTGAGGACAA
AACTCAAGGGAAATTGGAAAACCAACTGCTACAAGCTAATCCAATCCTTG
AAGCTTTTGGTAATGCTAAAACTGTTAAGAATGACAACTCATCTCGATTT
GTAAGTATTATAGTTTTTTGctgtatattttgtgtaataGAATGAAACTA
ATTAATAAGTAGAGACTAGTACAATAAACTTTAGACTTTTCTTAGACGAA
ATTGGAAGTTCTCTGAGTGTTTTAataaaatattgtttttaaatatttct
cacTTCTGCTTTAGGGTAAATTCATCAGAATCATGTTTGACAGCTCTGGT
TTCATCTGTGGAGCAAACATTGATCAATACTTGCTGGAAAAAGCGAGAAT
TGTTCGTCAAGCACCTGAGGAACGTACTTTCCACATCTTCTACCAATTGT
TATTGGGAGCTAGCCCTGAAGTCAAAAGTAATTAATTCATATTCATATTA
TATCTTgaatatcttcttttttttttaaatgtactAATGCTCAATGCATG
AAAAGATGAATTGTGTCCATTGCAATGCTTTTCTTGGTTATCACCCTTCA
ATTGCTATACTACTATGAATTGTGAAGACTTATCATGTTTCAAGCATTAT
TCATCGTTAGTgacattttcttcatttttagaacaaTTCTTGTTGTTGGA
GCCAACTGCTTACAATTTCATGTCCAACGGAACTGTCTCTCTTGCCAACA
TGGACGACCGTGCCGAGTTCAAAGCTACTCTTGAAGCTATGCGTGATATG
GGAATCACACAAGAAGAATTGGACCCCATTTTCAAAGTTATTTCTTCCCT
CTTGCTTTTTGGAAACATGGAATTCAAACAAGAACGTAAATCAGACCAAG
CTACTTTGCCAGACAACACCATTGCTCAAAAGATTTGCCATCTTTTAGGA
ATGCCTGTCACTGATTTCACAAAGAGCTTATTGAAACCAAGAGTTAAGGT
TGGTCGTGAATTCACACAAAAAGCTCAAACCAAAGCACAATGTGAATTTG
CTATTGAAGCCATTTCTAAAGCTACCTATGAACGTCTGTTCAAGTGGTTG
GTTGGTCGCATCaacaaatctttgaacaaaggaAAACGTGATGGCAACTC
TTTCATTGGTATCTTGGATATTGCtggttttgagatttttcaattgaACA
GCTTTGAACAACTTTGTATTAACTACACCAACGAGAAATTGCAACAACTT
TTCAACCACACTATGTTTGTTTTGGAACAAGAGGAGTACCAAAAGGAAGG
TATGAATTTGTGCTGAAACCTTTTATTATTTGAGTTGTAGGGTCAATGAC
AGTGTAAACTGCATCTTGTAACTTTCATTTTATGCCATGATCTCTTTATC
TCTGAATCTTGCCAATATATTTATTGATTATGTGAAAAGTGATCtacttt
taaacagaatctttAATACTTCTCTAATTTTGCTCTTCAGGTATTGATTG
GAAATTCATTGATTTCGGGCTGGATCTCCAACCTACCATTGACCTCATTG
AAAAACCAATGGGTCTTTTGGCTCTCTTGGATGAAGAGTGTTGGTTCCCC
AAGGCTACTGACAAATCATTGGTAGACAAGTTGAACAAACAACACTTGAA
ACATCCTAAATACTTGAAGCCTGACTTCAGATCCAACTCAGACTTCTGTG
TCATCCATTATGCTGGACGTGTCGATTACTCAGCTACCCAATGGTTGACC
AAAAACATGGACCCATTAAATGACAACATTGTATCGTTAATGACTCAATC
CAAAGATTCATTCATTTCAGGATTATGGAAGGATGTTGGTGAGTAAATCA
CAATTTATGATCAACAGATATTGGTTTCAAGTGAAGTTATCAAGACTTTT
CAGTAATAGAAATAGTTTAGGATTGCTTTCTTGATGGTTATGATACAGAG
TCACAACTTTCAGAATACAGCATCATTAGAGTAtcataaaatgattttgt
ttgcttttagACAACATTGTCGGTATGAGTGTTGCTGACAGTATGGATAC
TGCCTTTGGTGCTTCCAGAACCAAAAAGGGAATGTTCAGAACAGTCTCTC
AATTGTACAAGGTAattaaaaactttcattttctttataaaatgaGAAAG
TTGCCTCAAATCACAAAATCAGTGTTCTACTTCCTAAGAATTAAGTTTCA
TTGCCAAAAAGGCTTTCTATTGATAATTTATGAATTACTGTTTTATGTTG
TTCAAAgccataaaaaattattttgatatttaaggAACAATTGGCTGGTC
TTATGAATACATTGCACAGCACCAAACCCAACTTTGTTCGATGTATCATT
CCAAATTACGAAAAACGTGCTGGAAAAATTGACAACCACTTGGTCCTTGA
TCAATTGAGATGTAATGGTGTCTTGGAAGGTATCCGTATTTGTCGTCAAG
GTTTCCCCAACAGAATCCTCTTCCAAGAGTTCAGACAGCGTTATGAAATC
TTGTGCCCTGGTATTGTACCAAGAGGATTTATGGACGGACGTAAAGCTGC
TCAACAAATGGTATATTCTTTTTCTT

Coding sequence (CDS) from alignment at scaffold_448:554441..560716+

>TCONS_00065917 ID=TCONS_00065917|Name=TCONS_00065917|organism=Clytia hemisphaerica|type=CDS|length=2235bp|location=Sequence derived from alignment at scaffold_448:554441..560716+ (Clytia hemisphaerica)
ATGGGTGACGATGAACTAAAGTATCTTATGGTGGATCGCAGACAAGTGTC
TGATCCAGTTGCACATGCAGAATgggcttcaaaaaaattatgcTGGGTTC
CAAGCGAAGATCATGGTTTCCTTTCTGCCAGTATCAAGAAAGAAGATGGG
GATAAAGTTACTGTCCAGCTCGATGGAGGAAAAAGTGCCACCTTCCACAA
GGATGATATTCAAAGAATGAACCCCCCAAAATTTAATAAAGTTGAAGATA
TGGCCGACTTAACTTGCTTAAATGAAGCTTCGGTCTTGAACAACTTGAAA
GACAGATATTTCTCTGATTTGATCTATACCTATTCTGGTTTGTTCTGTGT
TGTTGTCAATCCTTACAAACGACTTCCCATTTACTCAGAGAAAGTTGTAG
CCTTGTACAAAGGCAAAAAGCGACATGAAGTCCCACCACATGTTTATGCA
ATTGCTGACTCTGCTTTCAGAAGCATGTTACAAGATCGTGAAAATCAATC
TATTCTTTGCACAGGAGAATCTGGAGcaggaaaaactgaaaataccaaGA
AAGTTATTCAATACTTGACTGCTGTTGCTGGCCGTAACCAAGGCAAAGTT
GATGCTGAGGACAAAACTCAAGGGAAATTGGAAAACCAACTGCTACAAGC
TAATCCAATCCTTGAAGCTTTTGGTAATGCTAAAACTGTTAAGAATGACA
ACTCATCTCGATTTGGTAAATTCATCAGAATCATGTTTGACAGCTCTGGT
TTCATCTGTGGAGCAAACATTGATCAATACTTGCTGGAAAAAGCGAGAAT
TGTTCGTCAAGCACCTGAGGAACGTACTTTCCACATCTTCTACCAATTGT
TATTGGGAGCTAGCCCTGAAGTCAAAAaacaaTTCTTGTTGTTGGAGCCA
ACTGCTTACAATTTCATGTCCAACGGAACTGTCTCTCTTGCCAACATGGA
CGACCGTGCCGAGTTCAAAGCTACTCTTGAAGCTATGCGTGATATGGGAA
TCACACAAGAAGAATTGGACCCCATTTTCAAAGTTATTTCTTCCCTCTTG
CTTTTTGGAAACATGGAATTCAAACAAGAACGTAAATCAGACCAAGCTAC
TTTGCCAGACAACACCATTGCTCAAAAGATTTGCCATCTTTTAGGAATGC
CTGTCACTGATTTCACAAAGAGCTTATTGAAACCAAGAGTTAAGGTTGGT
CGTGAATTCACACAAAAAGCTCAAACCAAAGCACAATGTGAATTTGCTAT
TGAAGCCATTTCTAAAGCTACCTATGAACGTCTGTTCAAGTGGTTGGTTG
GTCGCATCaacaaatctttgaacaaaggaAAACGTGATGGCAACTCTTTC
ATTGGTATCTTGGATATTGCtggttttgagatttttcaattgaACAGCTT
TGAACAACTTTGTATTAACTACACCAACGAGAAATTGCAACAACTTTTCA
ACCACACTATGTTTGTTTTGGAACAAGAGGAGTACCAAAAGGAAGGTATT
GATTGGAAATTCATTGATTTCGGGCTGGATCTCCAACCTACCATTGACCT
CATTGAAAAACCAATGGGTCTTTTGGCTCTCTTGGATGAAGAGTGTTGGT
TCCCCAAGGCTACTGACAAATCATTGGTAGACAAGTTGAACAAACAACAC
TTGAAACATCCTAAATACTTGAAGCCTGACTTCAGATCCAACTCAGACTT
CTGTGTCATCCATTATGCTGGACGTGTCGATTACTCAGCTACCCAATGGT
TGACCAAAAACATGGACCCATTAAATGACAACATTGTATCGTTAATGACT
CAATCCAAAGATTCATTCATTTCAGGATTATGGAAGGATGTTGACAACAT
TGTCGGTATGAGTGTTGCTGACAGTATGGATACTGCCTTTGGTGCTTCCA
GAACCAAAAAGGGAATGTTCAGAACAGTCTCTCAATTGTACAAGgAACAA
TTGGCTGGTCTTATGAATACATTGCACAGCACCAAACCCAACTTTGTTCG
ATGTATCATTCCAAATTACGAAAAACGTGCTGGAAAAATTGACAACCACT
TGGTCCTTGATCAATTGAGATGTAATGGTGTCTTGGAAGGTATCCGTATT
TGTCGTCAAGGTTTCCCCAACAGAATCCTCTTCCAAGAGTTCAGACAGCG
TTATGAAATCTTGTGCCCTGGTATTGTACCAAGAGGATTTATGGACGGAC
GTAAAGCTGCTCAACAAATGGTATATTCTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041299XLOC_041299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065917-exon-scaffold_448-1491911889:554441..554472TCONS_00065917-exon-scaffold_448-1491911889:554441..554472Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:554441..554472TCONS_00065917-exon-scaffold_448-1510915933:554441..554472Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:554441..554472TCONS_00065917-exon-scaffold_448-1575043694:554441..554472Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:555049..555412TCONS_00065917-exon-scaffold_448-1491911889:555049..555412Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:555049..555412TCONS_00065917-exon-scaffold_448-1510915933:555049..555412Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:555049..555412TCONS_00065917-exon-scaffold_448-1575043694:555049..555412Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:556446..556630TCONS_00065917-exon-scaffold_448-1491911889:556446..556630Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:556446..556630TCONS_00065917-exon-scaffold_448-1510915933:556446..556630Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:556446..556630TCONS_00065917-exon-scaffold_448-1575043694:556446..556630Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:558089..558290TCONS_00065917-exon-scaffold_448-1491911889:558089..558290Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:558089..558290TCONS_00065917-exon-scaffold_448-1510915933:558089..558290Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:558089..558290TCONS_00065917-exon-scaffold_448-1575043694:558089..558290Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:558455..558617TCONS_00065917-exon-scaffold_448-1491911889:558455..558617Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:558455..558617TCONS_00065917-exon-scaffold_448-1510915933:558455..558617Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:558455..558617TCONS_00065917-exon-scaffold_448-1575043694:558455..558617Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:558822..559439TCONS_00065917-exon-scaffold_448-1491911889:558822..559439Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:558822..559439TCONS_00065917-exon-scaffold_448-1510915933:558822..559439Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:558822..559439TCONS_00065917-exon-scaffold_448-1575043694:558822..559439Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:559631..559978TCONS_00065917-exon-scaffold_448-1491911889:559631..559978Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:559631..559978TCONS_00065917-exon-scaffold_448-1510915933:559631..559978Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:559631..559978TCONS_00065917-exon-scaffold_448-1575043694:559631..559978Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:560151..560251TCONS_00065917-exon-scaffold_448-1491911889:560151..560251Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:560151..560251TCONS_00065917-exon-scaffold_448-1510915933:560151..560251Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:560151..560251TCONS_00065917-exon-scaffold_448-1575043694:560151..560251Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1491911889:560425..560716TCONS_00065917-exon-scaffold_448-1491911889:560425..560716Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1510915933:560425..560716TCONS_00065917-exon-scaffold_448-1510915933:560425..560716Clytia hemisphaericaexon
TCONS_00065917-exon-scaffold_448-1575043694:560425..560716TCONS_00065917-exon-scaffold_448-1575043694:560425..560716Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065917-proteinTCONS_00065917-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:554441..560716 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0556049	0.286514	5.41141	0.0053476	35.5693	10.8242	38.723	46.8621	2.53448e-05	3.20594e-05	0.00029608	3.20073e-06	0.00108545	5.59586e-06	8.33185	18.6163	0.0388021	5.81659	0.0107648	0.0193161	0.0207191	1.02576	3.55482	0.0216349	19.7624	41.6828	0.00216772	0.0629691	10.686	41.6122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001609Myosin_head_motor_dom
IPR004009Myosin_N
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0016459myosin complex
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003774motor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016459 myosin complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0003774 motor activity
Blast
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BLAST of TCONS_00065917 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3)

HSP 1 Score: 1110.52 bits (2871), Expect = 0.000e+0
Identity = 504/749 (67.29%), Postives = 616/749 (82.24%), Query Frame = 1 
Query:   76 DDELKYLMVDRRQVSDPVAHAEWASKKLCWVPSEDHGFLSASIKKEDGDKVTVQL-DGGKSATFHKDDIQRMNPPKFNKVEDMADLTCLNEASVLNNLKDRYFSDLIYTYSGLFCVVVNPYKRLPIYSEKVVALYKGKKRHEVPPHVYAIADSAFRSMLQDRENQSILCTGESGAGKTENTKKVIQYLTAVAGRNQGKVDAEDKTQGKLENQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIMFDSSGFICGANIDQYLLEKARIVRQAPEERTFHIFYQLLLGASPEVKKQFLLLEPTAYNFMSNGTVSLANMDDRAEFKATLEAMRDMGITQEELDPIFKVISSLLLFGNMEFKQERKSDQATLPDNTIAQKICHLLGMPVTDFTKSLLKPRVKVGREFTQKAQTKAQCEFAIEAISKATYERLFKWLVGRINKSLNKGKRDGNSFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQKEGIDWKFIDFGLDLQPTIDLIEKPM---GLLALLDEECWFPKATDKSLVDKLNKQHLKHPKYLKP-DFRSNSDFCVIHYAGRVDYSATQWLTKNMDPLNDNIVSLMTQSKDSFISGLWKDVDNIVGMSVADSM-DTAFGAS-RTKKGMFRTVSQLYKEQLAGLMNTLHSTKPNFVRCIIPNYEKRAGKIDNHLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILCPGIVPRGFMDGRKAAQQMVYSF 2301
            +D  +YL VDR  + +P   A+W +KKL W+PSE HGF +ASIK+E GD+V V+L + GK A  +KDDIQ+MNPPKF+KVEDMA+LTCLNEASVL+NLKDRY+S LIYTYSGLFCVV+NPYK LPIYSE ++ +Y+GKKRHE+PPH+YAI++SA+R MLQDRE+QSILCTGESGAGKTENTKKVIQYL  VA  ++G+ D      G+LE QLLQANPILE+FGNAKTVKNDNSSRFGKFIRI FD +G+I GANI+ YLLEK+R VRQA +ERTFHIFYQLL GA   +K   LL     Y F+SNG + +    D+  F+ T+EAM  MG + EE+  + KV+SS+L FGN+ FK+ER +DQA++P+NT+AQK+CHLLGM V +FT+++L PR+KVGR++ QKAQTK Q +FA+EA++KATYERLF+WLV RINK+L++ KR G SFIGILDIAGFEIF+LNSFEQLCINYTNEKLQQLFNHTMF+LEQEEYQ+EGI+W FIDFGLDLQP IDLIE+P    G+LALLDEECWFPKATDK+ V+KL ++   H K+ KP   +  +DFC+IHYAG+VDY A +WL KNMDPLNDN+ +L+ QS D F++ LWKDVD IVG+     M +TAFG++ +TKKGMFRTV QLYKE L  LM TL +T PNFVRCIIPN+EKRAGK+D HLVLDQLRCNGVLEGIRICRQGFPNRI+FQEFRQRYEIL P  +P+GFMDG++A ++M+ + 
Sbjct:    8 EDPERYLFVDRAVIYNPATQADWTAKKLVWIPSERHGFEAASIKEERGDEVMVELAENGKKAMVNKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKD--HNIPGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQETMEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRAL 754
The following BLAST results are available for this feature:
BLAST of TCONS_00065917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYH100.000e+067.29Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3[more]
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