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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065927 ID=TCONS_00065927|Name=TCONS_00065927|organism=Clytia hemisphaerica|type=transcript|length=6463bpRun BLAST on NCBI protein sequence of TCONS_00065927-protein >TCONS_00065927-protein ID=TCONS_00065927-protein|Name=TCONS_00065927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp MFYAITVNDTISQGGNYRNGTTIRMNMVNKVFASIHGYEMSFDIEGEVQYRun BLAST on NCBI transcript from alignment at scaffold_448:719642..756804+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065927 ID=TCONS_00065927|Name=TCONS_00065927|organism=Clytia hemisphaerica|type=transcript|length=37163bp|location=Sequence derived from alignment at scaffold_448:719642..756804+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:719642..756804+ >TCONS_00065927 ID=TCONS_00065927|Name=TCONS_00065927|organism=Clytia hemisphaerica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_448:719642..756804+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065927 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0 Identity = 330/742 (44.47%), Postives = 462/742 (62.26%), Query Frame = 3
Query: 1611 DAIMFYAITVNDTISQGGNYRNGTTIRMNMVNKVFASIHGYEMSFDIEGEVQYSFRLHHFGTEPSGPICNCLFDNPGETNKCIYPFPKMEPIGELELIRKRDTNASKNWEFQYIPIPDAKMYWPGGKTLENIRDEPECGFDGLKCSTDDDDQRDKIVLGVSIAMTMVGVILIIAPIVMYRQYKLEQELTSQLWKINSYDL--TFRDWRXXXXXXXXXXXXXXXXYNSYGTDPATRQRYTSVATYKGTFVAVRKLNKRSVDLTRAVLLELKQMRDIRHDNINPFIGACIDTGNVMIVTQYGVRGSLQDILENEDIKLDKLFCLSLLHDIVKGMQYLHAEDIKSHGNLKSSNCIIDSRWVLKITDFGLQEFKSKQDDSNIEAHQFYRNLLYKAPELLRLPDPSGRGTQKGDVYSFAIIIQEFHTREGPWSTSYLE--PKEIVTRVKRVERPPFRPHVPQLIENAETLRDLMKKCWDENADERPSFAECRKEIENLMKINGLKLNILDNMVAMMEKYTNHLEEVVEQRTGELISEKQRTENLLLRMLPKSVARQLMKGQEVEAESFQEVTIYFSDIVGFTTLCSDSTPLQVVSLLNDLYTLFDDVISYYDVYKVETIGDAYMVVSGLPIRNGRQHAREISAMSLHILDAVKTFKIRHKPDKPLLVRIGLHSGPVVAGVVGTTMPRYCLFGDTVNYAARMESNGEPLRIHVSQPLKKNLDLFGTFHTEDRGPVFLKGIGDVPTFWL 3824
D ++ Y V +T++ GG +G I M N+ F + GY + D G+ + F L + +P + + G + + + + K+ WP G +I P+CGFD + + D VL + +++++G++++ +YR+ +LE+EL S+LW++ D+ + + +S G++Y S T Q + A YKG VAV+++N++ ++LTR VL ELK MRD++++++ F+GAC D N+ I+T+Y RGSLQDILENE I LD +F SL +DIVKGM +LH I SHGNLKSSNC++D R+VLKITD+GL+ F+ + + H Y L+ APELLR+ P RG+Q GDVYSF II+QE R G + L+ PKEI+ RV R E+PPFRP + L + E L LM++CW E+ ERP F + R + + N NILDN+++ ME+Y N+LEE+VE+RT + EK++ E LL ++LP SVA QL +G+ V+AE+F VTIYFSDIVGFT L ++STP+QVV+LLNDLYT FD VI +DVYKVETIGDAYMVVSGLP+RNGR HA E++ M+L +LDAV++F+IRH+P + L +RIG+H+GPV AGVVG MPRYCLFGDTVN A+RMESNGE L+IH+S K L+ FG F E RG V +KG G V T+WL
Sbjct: 355 DGLLLYIQAVTETLAHGGTVTDGENITQRMWNRSFQGVTGY-LKIDSSGDRETDFSL--WDMDPENGAFRVVLNYNGTSQ-------------------------------ELVAVSGRKLNWPLGYPPPDI---PKCGFDNEDPACNQDHLSTLEVLALVGSLSLLGILIV--SFFIYRKMQLEKELASELWRVRWEDVEPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRDLDPE---QGHTVYAKKLWTAPELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSL-ALQSHLEELGLLMQRCWAEDPQERPPFQQIRLTLRKFNREN--SSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELELRGDVEMKGKGKVRTYWL 1051 The following BLAST results are available for this feature:
BLAST of TCONS_00065927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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