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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065950 ID=TCONS_00065950|Name=TCONS_00065950|organism=Clytia hemisphaerica|type=transcript|length=2929bpRun BLAST on NCBI protein sequence of TCONS_00065950-protein >TCONS_00065950-protein ID=TCONS_00065950-protein|Name=TCONS_00065950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp GKSMKEVKAETQEKGDLGIVAEGCRTNQRMMFTPPPLTVGSVFKKLTEIARun BLAST on NCBI transcript from alignment at scaffold_448:308950..342496- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065950 ID=TCONS_00065950|Name=TCONS_00065950|organism=Clytia hemisphaerica|type=transcript|length=33547bp|location=Sequence derived from alignment at scaffold_448:308950..342496- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:308950..342496- >TCONS_00065950 ID=TCONS_00065950|Name=TCONS_00065950|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_448:308950..342496- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065950 vs. Swiss-Prot (Human)
Match: DNLI1 (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1) HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0 Identity = 338/558 (60.57%), Postives = 442/558 (79.21%), Query Frame = 1
Query: 1 GKSMKEVKAETQEKGDLGIVAEGCRTNQRMMFTPPPLTVGSVFKKLTEIAKMTGHSSMAKKAEKIQSMFVACKHSEARYLIRSLGGKLRIGLAEQSVLTSLGHAVVLTPPCQKEYPPEVLDASKTMSSEALKEKMDESALIIKTAYCELPTYNVIIPKLLEVDVTELPKYCHITPGIPLKPMLAHPTKGIGEVMKRFDNAEFTCEYKYDGERAQIHLLENGQINIYSRNQENNTTKYPDIIARMPKVLNEGVKSCIIDTESVAWDQEKKQILPFQVLTTRKRKDVEANDIKVQVCVYAFDLLYLNGESLVRQPFKKRRALLRSSFKEIEGEFVFAKAKTSSDTDEISEFLEESIQGNCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGGFHGSGKRTGKYGGYLLACYDEENEEYQSICKAGTGFSDDDLAKHNEFFKPHIIEKPKAYYRFGESVRPDHWFDAVQVWEVRAADLSISPVHKASVGIVDPVKGISLRFPRFLRIRDDKKPEEATSAQQVAQFYNSQEQIKNQTS-DNKVNEEDFY 1671
G+ ++ V+AE EKGD+G+VAE R+ QR+M PPPLT VF K +IA++TG +S AKK + I+ +FVAC+HSEAR++ RSL G+LR+GLAEQSVL +L AV LTPP Q E+PP ++DA K ++EA K ++E +I+K +CE+P + IIP LLE + LP++C ++PGIPLKPMLAHPT+GI EV+KRF+ A FTCEYKYDG+RAQIH LE G++ I+SRNQE+NT KYPDII+R+PK+ V S I+DTE+VAWD+EKKQI PFQVLTTRKRK+V+A++I+VQVC+YAFDL+YLNGESLVR+P +RR LLR +F E EGEFVFA + + D ++I+EFLE+S++ +CEGLMVKTL+VDATYEIAKRSHNWLKLKKDYL+GVGDTLDLVVIG + G GKR G+YGG+LLA YDE++EE Q+ICK GTGFSD++L +H++ K ++ P+ Y R +V PDHW D VWEV+ ADLS+SP++ A+ G+VD KGISLRFPRF+R+R+DK+PE+AT++ QVA Y Q QI+NQ D+ + ED Y
Sbjct: 363 GRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQ-EFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTY 919 The following BLAST results are available for this feature:
BLAST of TCONS_00065950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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