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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065975 ID=TCONS_00065975|Name=TCONS_00065975|organism=Clytia hemisphaerica|type=transcript|length=6532bpRun BLAST on NCBI protein sequence of TCONS_00065975-protein >TCONS_00065975-protein ID=TCONS_00065975-protein|Name=TCONS_00065975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1006bp MEGENENERSNEQVNLNSNESLSNVSPESNDQSVNPIPNNTSLKQEPQTPRun BLAST on NCBI transcript from alignment at scaffold_448:479625..500930- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065975 ID=TCONS_00065975|Name=TCONS_00065975|organism=Clytia hemisphaerica|type=transcript|length=21306bp|location=Sequence derived from alignment at scaffold_448:479625..500930- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:479625..500930- >TCONS_00065975 ID=TCONS_00065975|Name=TCONS_00065975|organism=Clytia hemisphaerica|type=CDS|length=3021bp|location=Sequence derived from alignment at scaffold_448:479625..500930- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065975 vs. Swiss-Prot (Human)
Match: BPTF (Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3) HSP 1 Score: 269.626 bits (688), Expect = 4.256e-72 Identity = 142/329 (43.16%), Postives = 211/329 (64.13%), Query Frame = 2
Query: 434 EDIPGPLLLPVSSNDLLIEKEHLLQALEVYEAVRHFGRVLKISTFGFEDLCAALAAKEXXXXXXXXXXXXXNSVISLDEACQINHSSLEEKDMVSLQIHTMDEFTWPEVIRLYAHSDRDFGFLVPIVERETYPIVPVEDTLKVLTWLVNCCMMTPHIREEIANEGLFISDDHCRKCCKMGELLCCELCPAVYHLDCLTPSLSEVPDNEWFCPVCEASKVKGVTDVLTEVDRCQVY-RNEPLGSDRHGRVYWFIVRRIIV------EGRHDVFYYSTQKHLDELTRAL-RSQEEYVLLNAIDERYDEIVKHMKITDELYIEKKGEKHSFL 1396
+DIP PL P SS DL++ EH++ + +YE +R+FG VL++S F FED CAAL ++E L++E+H++LL +V+ ++ + KD V+ ++ +D TWPEV+R+Y SD+++ ++P E E YP PVE+ +KVL +LV+ + T REE+ +EG+ DDHCR C K+G+LLCCE C AVYHL+C+ P L EVP++EW C VC A KV GVTD + E+ + + Y R+EP+G DR R YWF+ RR+I+ E ++YYST+ L EL L + E L ++E +EI +HM IT++L + +G SFL
Sbjct: 222 KDIP-PLEFPKSSEDLMVPNEHIMNVIAIYEVLRNFGTVLRLSPFRFEDFCAALVSQEQCTLMAEMHVVLLKAVLREEDTSNTTFGPADLKDSVNSTLYFIDGMTWPEVLRVYCESDKEYHHVLPYQEAEDYPYGPVENKIKVLQFLVDQFLTTNIAREELMSEGVIQYDDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEIQKNKPYIRHEPIGYDRSRRKYWFLNRRLIIEEDTENENEKKIWYYSTKVQLAELIDCLDKDYWEAELCKILEEMREEIHRHMDITEDLTNKARGSNKSFL 549 HSP 2 Score: 233.032 bits (593), Expect = 6.537e-61 Identity = 98/166 (59.04%), Postives = 125/166 (75.30%), Query Frame = 1
Query: 5263 LYCLCKQPYDDLQFYIGCDFCQDWFHGTCVGITQIEAAGIKQYRCPNCCDKNDQNLIELRKLSTKEIDGLKRLHRSLKSHKMAWPFQQPVDATDIPDYYEQIKEPMDFETMSKKLREKKYTTLAEFVADVSRIFNNCRIFNPPDSSFYKCAEVLDNFFVQKLKGFK 5760
LYC+CK PYD+ +FYIGCD CQ+W+HG CVGI Q EA I +Y CP C D + L L+ K+ +GLKR+ RSL++HKMAWPF +PVD D PDYY IKEPMD TM ++++ + Y L EFVAD+++IF+NCR +NP DS FY+CAEVL++FFVQKLKGFK
Sbjct: 2868 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTV-LTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 3032 HSP 3 Score: 142.124 bits (357), Expect = 2.602e-33 Identity = 69/207 (33.33%), Postives = 117/207 (56.52%), Query Frame = 2
Query: 1853 YFKLGQDGAYQHYKNQFSSNHLARSKHDINIERERRKYVHARFSLDG---FRWIGSCFRGDLGQVSTLQNTLVNFESTIPAAFMHPNWYKERNFWIQAVKLCTEVTHFSAILMYLEEIIKPIIMVNSWKQTCGSLQWDRIQGELKPLKSKQTKKSQQVEKIEVVSDDEIDVPLDDLIPVKFRWKPKHSVWEQKGESYRIYGSGGWMW 2464
YFKLGQ+G Y+ Y NQ+S+N A +KH + ++R+++ +F L F+W GS + +STL+ T+ E+ IP++F+HPNW R WI+AV++C++ F+ L LE +KP++M+ W+++ G + R+ ++ ++ + + E + + VK+ + KH VW+QKGE YR+ G GGW W
Sbjct: 839 YFKLGQEGKYRVYHNQYSTNSFALNKHQHREDHDKRRHLAHKFCLTPAGEFKWNGSVHGSKVLTISTLRLTITQLENNIPSSFLHPNWASHRANWIKAVQMCSKPREFALALAILECAVKPVVMLPIWRESLGHTRLHRMTS---------IEREEKEKVKKKEKKQEEEETMQQATWVKYTFPVKHQVWKQKGEEYRVTGYGGWSW 1036 HSP 4 Score: 95.1301 bits (235), Expect = 4.599e-19 Identity = 31/53 (58.49%), Postives = 46/53 (86.79%), Query Frame = 1
Query: 5071 KTDTKLYCICKTPYEDTKFYVGCDLCNDWFHGTCVGVSETDAKTMDEFICKEC 5229
K DTKLYCICKTPY+++KFY+GCD C +W+HG CVG+ +++A+ +DE++C +C
Sbjct: 2863 KKDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 2915 The following BLAST results are available for this feature:
BLAST of TCONS_00065975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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