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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065983 ID=TCONS_00065983|Name=TCONS_00065983|organism=Clytia hemisphaerica|type=transcript|length=7612bpRun BLAST on NCBI protein sequence of TCONS_00065983-protein >TCONS_00065983-protein ID=TCONS_00065983-protein|Name=TCONS_00065983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1658bp MFATGTKGLLVWCKQITSKYGSDVEVKNMTTSFKNGMAFCAIIHHFRPDLRun BLAST on NCBI transcript from alignment at scaffold_448:573485..634465- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065983 ID=TCONS_00065983|Name=TCONS_00065983|organism=Clytia hemisphaerica|type=transcript|length=60981bp|location=Sequence derived from alignment at scaffold_448:573485..634465- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:573485..634465- >TCONS_00065983 ID=TCONS_00065983|Name=TCONS_00065983|organism=Clytia hemisphaerica|type=CDS|length=4977bp|location=Sequence derived from alignment at scaffold_448:573485..634465- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065983 vs. Swiss-Prot (Human)
Match: MILK1 (MICAL-like protein 1 OS=Homo sapiens GN=MICALL1 PE=1 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 1.236e-48 Identity = 94/221 (42.53%), Postives = 131/221 (59.28%), Query Frame = 2
Query: 284 TGTKG-LLVWCKQITSKYGSDVEVKNMTTSFKNGMAFCAIIHHFRPDLIDFKKLSKENIAENNALAFRIAEDELDIPALLDVEDMVNMKVPDKLSIMTYVSQYYNYFKDKVPGEIEIKKYGSKKRTLAK-DKHEVIPNKKSNDKSKQGTKMSS----------QKSNVCCLCEKKVFLMERLTVESKLFHRICFKCCVCNIQLKTSTYEYDRSSGMFFCAK 910
G +G LL WC++ Y VE++++++SF++G+AFCAI+H RPDL+DF LSK+N+ ENN LAF +AE EL IPALLD DMV+M VPD LSIMTYVSQYYN+F PG+ + ++ LA V P + QG ++SS S+ C C++ V L++R + +L+HR CF+C C+ L YE G F CA+
Sbjct: 2 AGPRGALLAWCRRQCEGY-RGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFCS--PGQAGVSP---PRKGLAPCSPPSVAPTPVEPEDVAQGEELSSGSLSEQGTGQTPSSTCAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAE 216 HSP 2 Score: 88.1965 bits (217), Expect = 4.560e-17 Identity = 44/105 (41.90%), Postives = 73/105 (69.52%), Query Frame = 2
Query: 4745 LELEGVAMEKKLRELGDDEPEDAYLLTWFDLVNQKNLLLRKENELIYMSQELDLLQSQRHAEFELRQLMMKSEHEKTEADRDREEVLLSEILKMVTERSNIVEKM 5059
LE GV +E+KLR ++ ED L+ WF L+++K+LL+R+E+ELIY+ ++ +L Q Q E+ELR L+ K E + TE DR RE+VL+ E++ ++ +R+ I+ +
Sbjct: 698 LEHRGVLLEEKLRGGLNEGREDDMLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRAREKVLMQELVTLIEQRNAIINCL 802 The following BLAST results are available for this feature:
BLAST of TCONS_00065983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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