TCONS_00066172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066172
Unique NameTCONS_00066172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066172 ID=TCONS_00066172|Name=TCONS_00066172|organism=Clytia hemisphaerica|type=transcript|length=732bp
CTCCCCTCTTCGCAACTTGGAACAAAGACTTATTGGGATGATATTTACGA
GAAGGAATTAAAGAATTTCGCCGAAAATGAAGACGACGAAGGTGAAAATT
GgtttggTCACCAACGTATGGTAAAGGTTATTAAGTACATTATGAAACAA
AAAGATGTTTTACCGTTGGattcaaacattttggatgttGGGTGTGGTAA
TGGATTGTTTGTTCACCATATGGTGGAAGAAGGTTATAGCAATGTTTATG
GTATTGATTATTCACAACAAGCCATCGAGCTTGCTGATGCTATCGCACTT
TCAAGAGACGTCAAAACACAATGTCATTTCTCTCAAGCTGATTTTCTCGA
CCCATCCACGTGGAAAATAAATgacgtcactttcgatttatGCCATGACA
AAGGAACTTTCGATGCCGTATGTTTGAACCCAGACAATGCACAAGAGAAA
AGTCGACTTTACATCaagaatttgaaaacattattgAAAGAAGGTTCCTG
GTTTTTAATTACGTCTTGTAATTGGACTGGAGACGAGATAAAGAAACATT
TTTCGGACGGTTTCGATTTTGTTTGTGACATTCCAGCACCAACTTTCCAA
TTCGGTGGACAGTCGGGCCAAACTGTAACTAGTAATGTTTTCAGACGAAC
TGGAGATTGATTATTCGGTATGTTGGTAATTTCCGGTTTCGTCAATCATA
TACAGTGGTGATGGAGATAATAATTCAAACGT
Run BLAST on NCBI

transcript from alignment at scaffold_451:917287..924748+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066172 ID=TCONS_00066172|Name=TCONS_00066172|organism=Clytia hemisphaerica|type=transcript|length=7462bp|location=Sequence derived from alignment at scaffold_451:917287..924748+ (Clytia hemisphaerica)
CTCCCCTCTTCGCAACTTGGAACAAAGACTTAGTAAGTGTTACTTGAATT
TTTAGGCGCTCCAAATAAgcggttcgaataaacgggggggcggtggtttg
gaaaattttcgaggtTTTAATAAATGGGTCTAATTGCTGGGgggtggaaa
ttgtacttctgaaaacccaaaaataaggtaaatataggctaaaatcaggc
tatttagagcaaaaataaggggccttctaaTTCCGAATAAGGTCCGGGGG
CTtggggaattttcaaaaaattaacaagcgaggggggggcgtttatttgg
aacctaagagtaattatctacttttattttattttttaggattttttgtG
TCTCTTTATGAGTCCCCTTTAAGACATCTATCACCTTTtttagatacacg
ttttttttataagaacatccaaaaatttttgaagcctttggatgctctta
acttttgagttttaagcctaaaaatgttcttaacttgttcttaatttcac
cagtttttgagaattttggttcattttgctaagaaattaggtgttttaaA
GTCTGCAATTGAGTCTGCgaagttcttaatattttggccatgaatttcat
agcttgttcttatgaaaaaaacatgTTCTTCGCTCCAGATACAATCGTGC
TTTCTTTCTACTAGTTGGGATGATATTTACGAGAAGGAATTAAAGAATTT
CGCCGAAAATGAAGACGACGAAGGTGAAAATTGGTaagcagaaaaaatat
ttgtgtttTGAGTTGTAActgtattgggctcttccagaaaatgtccgtac
atggggcgatatattgtccgggggatattgaaaaatcattaaaatttgcc
ttgtccgggggggggggggaaatttttTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgggggggggggggggtaaatttgctctgtccgggggtaaaac
ccgttgtccgggaggccaaaagtcactttgtccggggggtaaatcactga
aaatcttTGTATCCTCCACTCCCCATATTTGAGCCCattacagtagagtc
tccataactcgaacctctataactcgaatgtctccttaattcgaacaagt
tttgTAGGTCTCTTCAGTTGACAAtttcttataaaccttactccataaca
cGAGCAAATGTTTGTTCCCCGTTGTGAGTGTTGGAGTTCTAGAGACTTCA
TTGTACTAttcgtgatatgcaccactggagagtcttctgagaacttttaa
aatcttccacccaatacgtcacttaaacaataggataagtgacgtattgg
gtggaacaaaaacagaatagttgcataatttcgtgaagtcattacagtgg
tgcatatcatgaatttcacCTAATTTTGATTCGCTGCAAGTGGttcagac
catgttcgcacatgacggttccgtttcgctccgaaacgtaatgaagccat
tctattggttacattcaagtgttacgtcacttctaaataaaacttttcgg
ccatccgccaaatagAATTCCCGCCAGAATTTCTTCCTCTAAGGTCAAAC
AGGTCTTgaaatagcgctccgcaacgcataTGTCATAAttaatttaataa
ttttaatttaaaaataatttttgacatttgtacgagttacgatcccacaa
ttcaatgcggTTCAATTtaagatacgtgcaagttgttatatatcttttgt
caaatgatgcaattaacgtgcaaaagagattaacgcaaaggttggtggga
ttggaactcgtacaaacacatcgaaagtaatgattatgtcataagtaaaa
tccatttttagaTGCGGTGTGCTATTATTAGAGTATGGGTCTTCGAATGG
CAGATATAACATTATGTACAAATGACATAATACAAGATGAATAAAGTAGA
CGAGAGTGACGCCCCTCAAACAACATAACATCTATCTACAGTTCCTTCCG
TTTTGTAGTTGGGCAAAGATTCTCACAACGAGAGTGACGCCCCTCAAACA
ACATAACATCTATCTACAGTTCCTTCCGTTTTCTAGTTGGGCAAAGATTC
TCACAACGAGAGGGACGCCCCTCAAACAACATAACATCTATCTACAGTTC
CTTCCGTTTTGTGGTTCTTCATCAAGTTGGAAATGAGCGAGAAGCGATAA
GATCTCAGCTAATGCTAGTGTGAAATTAACAACTAAGAAACTGTGCAATT
TTATAGGTGTTAGATCGAAGTTTGGATGGAATAATAAGTAACGTCAAGTA
ACGTTCAATACTGATAGCTATAATCCCCCAACAAATATCTTGAGACAGAA
GAATTCTAAACATTTTTGCAAGATGAAAATCCGTCCCCTAGACCCCACTA
TCAGTGTAGAGTCTGGAAATGGCCGGGAACTCAACGCTGACAGTGGGGGG
AGGAGGGAGACCACGTGAAGTGTCTCAGATATAAATTGGGGGATTGTAGA
ATGACTCAAACAACCTGCCAGCATGGCTGAGATCGATTCCACagatttaa
aaagtgaaaacgAGAATATTCCAtttatttttcaggtttggTCACCAACG
TATGGTAAAGGTTATTAAGTACATTATGAAACAAAAAGATGTTTTACCGT
TGGattcaaacattttggatgttGGGTGTGGTAATGGATTGTTTGTTCAC
CATATGGTATGTCTGGATTATAATCAATGTTTAAGACACAGTTCATCTAT
TGTTTCTAGCTGACCCAAAAAGAAActtatacgcatgcgtaatttatcgT
TCTTCAAACCGCTAGTTGTTAAGTAGCGTAAAATACAAAGAGTAACGTAA
GGGTGGTGTCACTTTTAAGGTTTATTTTAAGAATCCGTACCGAAGAAGAT
TTTATAGGAGTTCTAaagagatttttcatttttccaggggataaaaagtt
attttaaaacTTCCAGGGGGGTAAATGATttatttcagtattttagttcg
tCAATACTCATTTTAGGGTATGAAGATTTTTCCAAGGATTTTCTGCAAAT
TCTccaccagggggggggggaatatttttgacttgaaaatgttcgtccac
ccacAACCCCCCCTGTACAGTTATTAAACATAGGTTGTTAAAATTGGTGA
AATATACCTAAGAAATTTTTCGCCATttttggtgcaatttggcggaattt
attttggcgaacgacctatttttgttcaatattttagctgaaaaaagagg
aaaaaaggatttttaagagaaatactttaatgggataaactttcgcgggg
attaaatttcgcggatttcgcggatgggtgtcatccgcgaaattaagtcc
caatggaaatttagaacggcctcatccgcgaaatatttctaaacaaaact
caaaatatgtcaaataaatactatttgaatggttagttgcatcaaagaag
cgcaaataatgtgtatttcaacaaccaacatgcttgatttgacagtaaaa
gtcaaaaaatcatgaaaatattgccacccaatagtgccacccacgaaatt
taatccccgcgaaagtttatcccattaaagtagacaCTAAGTTgatagaa
aattaaatttggcgagaatttattttggcgaatgatctataaatttaaat
ttggcggaaagaaattttggcgaatctGGCGAAATTTTtaggcaattcgc
caaattcgccaaaaaaattttttgccaaaatttgttcccttaaggtaaat
cTGTTNAATTTTtaggcaattcgccaaattcgccaaaaaaaaatttgcca
aaatttgttcccttaaggtagatctgttttgtttcttttgaacAGGTGGA
AGAAGGTTATAGCAATGTTTATGGTATTGATTATTCACAACAAGCCATCG
AGCTTGCTGATGCTATCGCACTTTCAAGAGACGTCAAAACACAATGTCAT
TTCTCTGTGAGTCTTCcataaaatatgatttttttgtcacattaaaggtt
ttatttttacataagtgtgtCCGTTTCATCTCAGGCaaatgtttcatatc
aggacagtgtctgttatgttatgctgatataggcaaaaaacgtttttctt
ttcctctttttaacaAATCTTGCTCCATATCCGTACCAATCCAATGTGTA
AAagcttataaattaaaattgacgagtaagcaaacgatatcactcttatt
taaaaacaaaacctttaaagtgcGATCTCATCGTAACAGTAAAGTAGACT
AGCACGCTAGTCAGGCTGGAACGATATCACGCGGGGGGGGAGGAAGAAAG
TAAGCATatgagttaggtaagcgtatgAAGAAAGTTTTTGGCCGGGAGGG
GCTGAAAAAACCCTTTCGCCTACATTTATATGTTtccctacgcagctcct
attttaGCAAACGGCCGCTTCCCtcatgttcccgccctctggcatgatta
attaacaggcTAGTTGCTTGTCTAGCATTAAATCAGAAGGGGTTGAAATT
ACTTCATTTCTCTCAATTagaaacaaaatttgtaaaataaataacaaatt
aaTCAGTTTTaaataattatcttttcaacgaccGCTCAAATCTTAATCTG
TTTTCATacacgttttgttttttttaagaaactagttttaccaagcagcc
tcaatgtttcttaggAAATCGGCCTTTTTAACCTTCTAAACATTTTCACA
TAATCAgactatttttcatgcaaagaaaaaaaaatttgttttgattggaa
ggttcttaaaaaaactaataaaaaatgttattttctcattctcggcatgt
ttcttagatgtttcttagtttttaggcattctgagcctcatggcTCTTAa
aagtgtttcttaaaaaaaaaacgtgtactctaaCAAAAGTTTAAGACTAT
GCTCAGACGTTACGGTTACGTAACTCCGATAAAAATAGTTGATAAAGCTT
GGTCAAGGGTATAAAAAGTATAAGCACTCTCAAAAAAGTCCACCCGGCCG
ATTTCCGGAAGCAACACTTTGTTGGCCTCAGTGGTTAGGAGACAACatta
aacaacattttttttttgcaaaactttGTGCGGTAATACGGTAGTAAAAG
CATAACTAGATCTTCACTTGTTTACCTAAATTTGAGAAGGTTCCAGTCAG
ATACAGTCAATTTCTCTAATTCTACCCTCtatactattcgaatctttcta
tggAATAAATATACTTATagataattcgaactaaaatgttGGTCGCCTTA
GCTGAaaattagtataaaatactttcggtaattcgaatttttctctaatt
caaaaaatttttggtcccagaaagatcgaattagagagagtcaaatGTGA
ATCGGTAATTTTTATTAAGTTTGTCATTAAtcgaatttttctctaattta
aggaaaattttttgatcccttgaatatcgaattagagagagtcaaaaGTG
AATCGGTAATTTTTATTAAGTTTGTCATTAATCTAATATATGTCTTTTTC
TTGCATTCTTTTTAAAAGCAAGCTGATTTTCTCGACCCATCCACGTGGAA
AATAAATgacgtcactttcgatttatGCCATGACAAAGGAACTTTCGATG
CCGTATGTTTGAATCCAGACAATGCACAAGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTTTAAAAGCAAGCTGATTTT
CTCGACCCATCCACGTGGAAAATAAATgacgtcactttcgatttatGCCA
TGACAAAGGAACTTTCGATGCCGTATGTTTGAACCCAGACAATGCACAAG
AGAAAAGTCGACTTTACATCaagaatttgaaaacattattgAAAGAAGGT
TCCTGGTTTTTAATTACGTCTTGTAATTGGACTGGAGACGAGATAAAGAA
ACATTTTTCGGACGGTATGTTAATATTTTTCGGACGGTATGTTAATATTT
TTCGGACGGTATGTTAATATTTCTCGGACGATATGTTAATAACTGCCTAA
CCTTTCAAACCCCAGTAACGTGTATACACGTTCTAAATTTAAAGTATTTA
AttaataatttatttaaaatatttttataaagatttaagaaaaaaacctA
CTCCTATAGACTAAGCTATAATTCCAGACCACTTGAGTGGGACTCagatt
tgattttctgattttccaaACCTAACAGGGGCTCCAGGCTTACTTATAAT
GtacggcacatacccgtaccctttCACTTGCCTCCACCCTGACACTCACC
GAAACACCCAACAAGGGAAATTTTATGTTAAATACGTTCTTTTTCCCAGG
TTTCGATTTTGTTTGTGACATTCCAGCACCAACTTTCCAATTCGGTGGAC
AGTCGGGCCAAACTGTAACTAGTAATGTTTTCAGACgtaagttttgtttt
tgctgTATTTATTACCCCCTCCTTCCTTTGATATTGAAACACTTCACTTT
CttgaacaaattttgaaaagtaaatgATGATATAAGCGCatttgaatatc
tttccaacgataccaacaTTTTTATTATACGACATAACTTATGCTATACG
TTCTACAAGCGCTTGGAAAGTTatagtcaaaaatgaaaatactgcacatc
tttttaatacaaatttgaggattttggttatttttttaactgtaaacctt
agaccacgagggacgcgtatatgcgtccaaaacaagccaaaatacgGAGT
CTCAGACTTAAAGCcatagctcctgaccacttgattcaaaggggcataaa
ccgaatgttTTTAGAAAGAGTTTGAAAAGTGCTTTCCAATGGTATCTTCT
AATACCATCTTctaaaagctacaagcttttatggcactttgaaGTTTTgc
gttaaaaaaaaattagaaaaatttcaacttttccaaaaaaacatcgCGCA
CAAAAGGTTAACGTGTTTACTTATAGGAACTGGAGATTGATTATTCGGTA
TGTTGGTAATTTCCGGTTTCGTCAATCATATACAGTGGTGATGGAGATAA
TAATTCAAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041418XLOC_041418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066172-exon-scaffold_451-1491911889:917287..917318TCONS_00066172-exon-scaffold_451-1491911889:917287..917318Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:917287..917318TCONS_00066172-exon-scaffold_451-1510915933:917287..917318Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:917287..917318TCONS_00066172-exon-scaffold_451-1575043694:917287..917318Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1491911889:917951..918019TCONS_00066172-exon-scaffold_451-1491911889:917951..918019Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:917951..918019TCONS_00066172-exon-scaffold_451-1510915933:917951..918019Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:917951..918019TCONS_00066172-exon-scaffold_451-1575043694:917951..918019Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1491911889:920272..920392TCONS_00066172-exon-scaffold_451-1491911889:920272..920392Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:920272..920392TCONS_00066172-exon-scaffold_451-1510915933:920272..920392Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:920272..920392TCONS_00066172-exon-scaffold_451-1575043694:920272..920392Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1491911889:921532..921642TCONS_00066172-exon-scaffold_451-1491911889:921532..921642Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:921532..921642TCONS_00066172-exon-scaffold_451-1510915933:921532..921642Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:921532..921642TCONS_00066172-exon-scaffold_451-1575043694:921532..921642Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1491911889:923425..923650TCONS_00066172-exon-scaffold_451-1491911889:923425..923650Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:923425..923650TCONS_00066172-exon-scaffold_451-1510915933:923425..923650Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:923425..923650TCONS_00066172-exon-scaffold_451-1575043694:923425..923650Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1491911889:924036..924122TCONS_00066172-exon-scaffold_451-1491911889:924036..924122Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:924036..924122TCONS_00066172-exon-scaffold_451-1510915933:924036..924122Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:924036..924122TCONS_00066172-exon-scaffold_451-1575043694:924036..924122Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1491911889:924663..924748TCONS_00066172-exon-scaffold_451-1491911889:924663..924748Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1510915933:924663..924748TCONS_00066172-exon-scaffold_451-1510915933:924663..924748Clytia hemisphaericaexon
TCONS_00066172-exon-scaffold_451-1575043694:924663..924748TCONS_00066172-exon-scaffold_451-1575043694:924663..924748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:917287..924748 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0679	14.1857	15.2155	13.7553	3.89597	5.6683	9.78835	14.2503	10.0792	6.74276	5.94445	6.20632	5.27784	1.42327	8.91794	9.76523	10.4433	13.8161	4.83656	5.31698	4.07526	4.62187	10.2805	9.9735	5.54979	9.23816	3.9958	3.52438	5.1891	6.60783
Blast
[Close]
BLAST of TCONS_00066172 vs. Swiss-Prot (Human)
Match: EFMT2 (EEF1A lysine methyltransferase 2 OS=Homo sapiens GN=EEF1AKMT2 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 8.162e-50
Identity = 85/189 (44.97%), Postives = 126/189 (66.67%), Query Frame = 1 
Query:   10 SQLGTKTYWDDIYEKELKNFAENEDDEGENWFGHQRMVKVIKYIMKQKDVLPLDSNILDVGCGNGLFVHHMVEEGYSNVYGIDYSQQAIELADAIALSRDVKTQCHFSQADFLDPSTWKINDVTFDLCHDKGTFDAVCLNPDNAQEKSRLYIKNLKTLLKEGSWFLITSCNWTGDEIKKHFSDGFDFVC 576
            S LGT+ +WD +YE+EL+ F E   D GE WFG + M ++I+++ K K  +PLD+++LD+G GNG+F+  + + G+SN+ GIDYS  AI+L+ +I + ++  +       DFL+ ST       F +C DKGTFDA+ LNPDNA EK + Y+K+L  +LK   +FLITSCNWT +E+   FS+G+  V 
Sbjct:   30 SALGTREHWDAVYERELQTFREY-GDTGEIWFGEESMNRLIRWMQKHK--IPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSI-IEKEGLSNIKLKVEDFLNLST---QLSGFHICIDKGTFDAISLNPDNAIEKRKQYVKSLSRVLKVKGFFLITSCNWTKEELLNEFSEGWSTVA 211
The following BLAST results are available for this feature:
BLAST of TCONS_00066172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFMT28.162e-5044.97EEF1A lysine methyltransferase 2 OS=Homo sapiens G... [more]
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