TCONS_00066223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066223
Unique NameTCONS_00066223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066223 ID=TCONS_00066223|Name=TCONS_00066223|organism=Clytia hemisphaerica|type=transcript|length=790bp
CAAGATAACTCTACTTTAAGGACAAGGAATTTATCCATATGGGAAGGACA
CGCAATCAGAATCATCTTTAActtcaatgatgctggtcaaccTAATCAAT
GTCTCTTCATTAAAGTCCCTGGAACACTTGTTTACCCAGCAGTAATTACA
GATATTGACGCATCGAAAGCCAGCGACGTTTTCGTACCTCCCTCCGTCTT
CATTCAGCCATCCTCATCATCGGCCACGTATTTCGATTTAACCACGACTA
CGACAAGTATTACCAGTGACGTTTTCGTACCTCCCTCTGTCTTCATTCAA
CCGTCATCATCACCAGTCACGTCTTTTGATTCAACCACGACTACGACAAG
TATTACTGACTCATTTATTCAACAAGCATCTACAACGACGGGTCTTGATA
GTTATACGGGATACGTTCCTACGACAAATGTTCAACCTACGGCATCATCG
AAGGACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAACGACCCC
ACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCAAAGCTCC
CAGCGACCCCACCAAAAACAACTCCTTCACAAGAACCACCAATCACCTCG
GCACCAAACACTCCAACTCAACCGATCACAATCATACCAACAACTTCGTT
CCGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCAC
CGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCG
GCAGCTCTCTTCTACGTTCTGAGAAAAAATCCTTCCAGAC
Run BLAST on NCBI

protein sequence of TCONS_00066223-protein

>TCONS_00066223-protein ID=TCONS_00066223-protein|Name=TCONS_00066223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
QDNSTLRTRNLSIWEGHAIRIIFNFNDAGQPNQCLFIKVPGTLVYPAVIT
DIDASKASDVFVPPSVFIQPSSSSATYFDLTTTTTSITSDVFVPPSVFIQ
PSSSPVTSFDSTTTTTSITDSFIQQASTTTGLDSYTGYVPTTNVQPTASS
KDTSTSSITTPKVPTTPPKTTPSQKPSVVTPKLPATPPKTTPSQEPPITS
APNTPTQPITIIPTTSFRNTTSPTEEPPVVNNAPVIAGVTTSLAFLLVFS
AALFYVLRKNPSR
Run BLAST on NCBI

transcript from alignment at scaffold_451:301647..305614-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066223 ID=TCONS_00066223|Name=TCONS_00066223|organism=Clytia hemisphaerica|type=transcript|length=3968bp|location=Sequence derived from alignment at scaffold_451:301647..305614- (Clytia hemisphaerica)
CAAGATAACTCTACTTTAGTAAGTATTTTATACCAGTATCTTATTTTATA
ATAGTCAGTACTTACAGTTTCACCGTGCTAACCAAATTTGACCTGTATTA
GATTAATTTTTCTTCAAAACGAAATTTCAATATTTTACAAAAACAATTCC
TAGTAATTAGTGTTGCGAATATTTCCAAGGAGATACTGACCTTTCAGCCT
GAAAAATGATCTGCCTTCCCCATCGGGGAATGGGTCCTACTCCTTGCGAA
GTAAGAATTCCTCCTTTTTCGTTTTACGTTTAGCGCTGTCTAGACACCAC
TGGTTCTGTACACACGAGACATAGATACCATAATGCATAGTGATGACACT
CGAACTACGCGGGACAGCATATAGCTCGTCGCTGGCGTAAAACCTCAGCC
TGAAAAATATAAACAGCTATTTGTAAAACCCACAGGAAAAAGTATGGAAA
TCACATGCTTGGTAAAACTGATTTCTGTGCATGTGATTCTGAAAAAAATC
ACAAGCGTGTGAAAATTCAAATCACAAGCCATCTTTTCTCGACTTAAATG
GGGTGTCTGACTAGATCTAAAATCAAAAATAGGATTTTTTGTCTTTCTCA
GAGAGAGAGGTTTAATACCCTAAAAGTAACTCACTTCTATTCTATTTAAC
AAGTGAGAAAAGATGGATTGTGAATTACATTTTCACACGCTTGTGATTTT
TTGCAGGATCACATGCTCGGAAATTGTACCCTGAGTATCAGAGGTTAAGT
TTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATAAAAACTTTATCGC
GCATGTGTCAATTTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAAT
ATTACCATATTAATGTCTAGCAGACTGTATCAGTATGTAGTTTACTATTT
ACGAATTCCCCAGAAACCTCCAAGTGTAGTTGAAATGAGTTTAGTTCGAA
AGAAATATTTTACATGATCCCCAAATGTATAACTGCGTAATTACTAAACT
TTTAATTATGGAAATGTCACTTTAATTGAATCGAAATAATATAGACAGAC
TTTATGTTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGAC
TTTTTGTAAGCTGTGTTTTCAACGACGGGAATAAAAATATCGACTATGAC
GCTCATCCAAGATCTTGGATGGTCGTCATGGTCACTTTTGTCTTCGCTGA
TTGCGCGATGAATAGAATCTCGATTCGTCGGCACAGCGTAAATATATGAT
TTTGAGCTGTGCTTTTCACGGTACGGAAATTGGTTTTCACACGCTTGTGG
TTCACGGATTTTTTCCTGTGACCTAGTATGGCAAAACAATCAAAACAAAT
CAAAAATGCTCAAGTTTGCTTTCACCTATTACGCGAACTATTTGCTCATC
TTTTTCAGAGGACAAGGAATTTATCCATATGGGAAGGACACGCAATCAGA
ATCATCTTTAACTTCAATGATGCTGGTCAACCTAATCAATGTCTCTTCAT
TAAAGTCCCTGGAACACTTGTTTGTGAGTTTCTAGGCTTATTCTTTGTTT
CCATTTTTAAAACTTTATAATGTTAATTTCTCGGAGAATGATCTTTTTGT
TTTCGAATGAACAATTAAAAATCCACATTTTCTAGATAGCAATTTTCTTG
GTACACGTTTTATGTACTATATTTTACTCTAAAATCTGTAATTGCACAAA
ACTTCTATAGCAATAATTAAACTGCCCCAAACCAAAAGAAAGTAGTCAAA
CTCAAGTTTGATGATAGCTCCCCGCTTCGATGGTCATCTTGAATTTGAGC
AGAGTGGAGTTATGCTCTAAGCTAAGCTAAGCTATATATACCTCACCTAT
TATAGCTAAGCACTCGCCAGCTATAATAGGTTGTTCGCCGAAATTCAGGG
ACAAGTGGCATTTTCTGGGAAAGAGGGGTATTAAGAGGAAGAGCTGAAGC
CTATGACTTTATAAATTTGATTGTAATATGCAAAGAGCAAAACTCATGAT
TTAGTAGCTCGTTTTCAGACCCAGCAGTAATTACAGATATTGACGCATCG
AAAGCCAGCGACGTTTTCGTACCTCCCTCCGTCTTCATTCAGCCATCCTC
ATCATCGGCCACGTATTTCGATTTAACCACGACTACGACAAGTATTACCA
GTGACGTTTTCGTACCTCCCTCTGTCTTCATTCAACCGTCATCATCACCA
GTCACGTCTTTTGATTCAACCACGACTACGACAAGTATTACTGACTCATT
TATTCAACAAGCATCTACAACGACGGGTCTTGATAGTTATACGGGATACG
TTCCTACGACAAATGTTCAACCTACGGCATCATCGAAGGTGGGATATCTT
AAAAACTTCTGAAATAATCAATACCTAAATAAATATTTTATGTTTGTCTT
TTGAAAGATCATTTCAAGAACTTGACTTAGAAATACCTAGCTAGAGAGCT
GTTACCTTGCTATAGTATCTCAAAGTTATTGAGCTAGGAAAACGTCAATG
GACTTTTAAGCGACCGTAGCATGAAGGTAGAGCATCCAGCTACGGCACGC
AAGGCTGTGGGTTCGATCTTCAGCCGGGTCATACCAAAGATTCTCAAAAT
GGTACTTGGTGCCTCTCTGCTTGATGCTCAGCAAATAAAGAGACGAATCA
AGGGTAAGTGGAGAAATCCAGGTATAGGAGCGGCGCCCTCCCCTAGCTTT
GGGTAGACAGCTATACGAAAAGGGAGCCTTCGGGTCGCCCTGGACTGCAG
TCGCAAAATTACTTTACTTACTTCAAGGACTTTAGGCTCTAGAGATACAG
AACCGAACCGATCTTTATATTCTGATTAGAAAGTGTCATTAAAATGACAA
AGATTTAAAAAACATTTAAGCTTTAAGAAGAAGAAGAAAAAGAAGAAGAA
GAAGAGGAAGAAGAAGAAGAGCATAACTAGGCAGTAAAGCGACAATCACG
TACCCAGAGCCACTTATACTCTTTTATTTTACTGATACAATATTGTGAGC
ACCTTTTTGATAAAACGAGCTTTATTTTTCATGAATTTTGCCCTTATGTA
TAACAATGAAGTGAGAACAGTCGCTCTCATGCTGTCTTCTGACCAGCCAC
CAGAATCTTTATTTTTGAAATCAATGAATGAGCTATCAAAATGCTTTTTG
TTTTTAGGACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAACGA
CCCCACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCAAAG
CTCCCAGCGACCCCACCAAAAACAACTCCTTCACAAGAACCACCAATCAC
CTCGGCACCAAACACTCCAACTCAACCGATCACAATCATACCAACAACTT
CGTTCCGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAAT
GCACCGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGTATT
TTCGGCAGCTCTCTTCTACGTTCTGAGAAAAAAGTAAGTATCAAGATGTT
ACTGTTATCAAATTAGATACTCGAATATTGATAATACCATGGCTATAAAA
AGTCAGACTTCTCAAAAAGGCTAAATGTTCAGGTGACTCAATTTTGGTCA
ACTCCTCGTAATCCTAATCAAAACCTTTGTTATTTTGTTTCAGATTAAAG
AAGAGACAGACCGGTGAGTAATTTTTTCATTTATACGCATATAAGTCACA
AACTATTTATGGTCTTACACGGATGGATTTCCAAATGGTGCATATCATGT
CTATCTGTTTCTGCTTCATAGTCTTATGTTCCTATCATGTTGTAAAGTGT
TTGTAGCCTTACCCTTCCCACTATCATAGTCCTTTCCAGACGATCTTTTT
TATCGCCTCAAGAAGAAAAAAAACTTTTTATTTTACAAATTGTAGTTTCA
TGCCACATCTTTAGGCAACAAAAAGCTTCATATAATCTATCATTTTATGC
TTCATAGTCCTTCCAGAC

Coding sequence (CDS) from alignment at scaffold_451:301647..305614-

>TCONS_00066223 ID=TCONS_00066223|Name=TCONS_00066223|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_451:301647..305614- (Clytia hemisphaerica)
CAAGATAACTCTACTTTAAGGACAAGGAATTTATCCATATGGGAAGGACA
CGCAATCAGAATCATCTTTAACTTCAATGATGCTGGTCAACCTAATCAAT
GTCTCTTCATTAAAGTCCCTGGAACACTTGTTTACCCAGCAGTAATTACA
GATATTGACGCATCGAAAGCCAGCGACGTTTTCGTACCTCCCTCCGTCTT
CATTCAGCCATCCTCATCATCGGCCACGTATTTCGATTTAACCACGACTA
CGACAAGTATTACCAGTGACGTTTTCGTACCTCCCTCTGTCTTCATTCAA
CCGTCATCATCACCAGTCACGTCTTTTGATTCAACCACGACTACGACAAG
TATTACTGACTCATTTATTCAACAAGCATCTACAACGACGGGTCTTGATA
GTTATACGGGATACGTTCCTACGACAAATGTTCAACCTACGGCATCATCG
AAGGACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAACGACCCC
ACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCAAAGCTCC
CAGCGACCCCACCAAAAACAACTCCTTCACAAGAACCACCAATCACCTCG
GCACCAAACACTCCAACTCAACCGATCACAATCATACCAACAACTTCGTT
CCGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCAC
CGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCG
GCAGCTCTCTTCTACGTTCTGAGAAAAAATCCTTCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041443XLOC_041443Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066223-proteinTCONS_00066223-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066223-exon-scaffold_451-1575043694:305597..305614TCONS_00066223-exon-scaffold_451-1575043694:305597..305614Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1575043694:304092..304206TCONS_00066223-exon-scaffold_451-1575043694:304092..304206Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1575043694:303277..303596TCONS_00066223-exon-scaffold_451-1575043694:303277..303596Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1575043694:302132..302457TCONS_00066223-exon-scaffold_451-1575043694:302132..302457Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1575043694:301647..301657TCONS_00066223-exon-scaffold_451-1575043694:301647..301657Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1510915933:305597..305614TCONS_00066223-exon-scaffold_451-1510915933:305597..305614Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1510915933:304092..304206TCONS_00066223-exon-scaffold_451-1510915933:304092..304206Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1510915933:303277..303596TCONS_00066223-exon-scaffold_451-1510915933:303277..303596Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1510915933:302132..302457TCONS_00066223-exon-scaffold_451-1510915933:302132..302457Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1510915933:301647..301657TCONS_00066223-exon-scaffold_451-1510915933:301647..301657Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1491911889:305597..305614TCONS_00066223-exon-scaffold_451-1491911889:305597..305614Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1491911889:304092..304206TCONS_00066223-exon-scaffold_451-1491911889:304092..304206Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1491911889:303277..303596TCONS_00066223-exon-scaffold_451-1491911889:303277..303596Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1491911889:302132..302457TCONS_00066223-exon-scaffold_451-1491911889:302132..302457Clytia hemisphaericaexon
TCONS_00066223-exon-scaffold_451-1491911889:301647..301657TCONS_00066223-exon-scaffold_451-1491911889:301647..301657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:301647..305614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.823472	1.34701	4.5923	4.12335	2.04445	2.46291	1.73223	1.2607	4.13175	3.14336	2.92591	1.46252	4.79174	2.36413	7.82368	4.18547	2.66822	3.35396	1.98392	1.96074	1.60376	1.22874	0.502379	0.536152	0.787109	1.03579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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