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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066636 ID=TCONS_00066636|Name=TCONS_00066636|organism=Clytia hemisphaerica|type=transcript|length=2522bpRun BLAST on NCBI protein sequence of TCONS_00066636-protein >TCONS_00066636-protein ID=TCONS_00066636-protein|Name=TCONS_00066636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp MKPIALFLVFLTCHDVLSSVSDQTSEVGLADIEGVIAGYGDFNSDQATDVRun BLAST on NCBI transcript from alignment at scaffold_457:205839..215755+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066636 ID=TCONS_00066636|Name=TCONS_00066636|organism=Clytia hemisphaerica|type=transcript|length=9917bp|location=Sequence derived from alignment at scaffold_457:205839..215755+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_457:205839..215755+ >TCONS_00066636 ID=TCONS_00066636|Name=TCONS_00066636|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_457:205839..215755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066636 vs. Swiss-Prot (Human)
Match: TIP (T-cell immunomodulatory protein OS=Homo sapiens GN=ITFG1 PE=1 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 1.010e-76 Identity = 206/609 (33.83%), Postives = 324/609 (53.20%), Query Frame = 2
Query: 116 SVSDQTSEVGLADIEGVIAGYGDFNSDQATDVFVISKDWATVHVYLWNVRNQKFTKGDATVKSEN----IVNIVPADFNGDGDMDLLIS---TESSKKTVISQVYFGNRKSLTKSDD--LKIEAKDQPTVFDMNGDYLPDLFGTD---------LNGNRTYWVYVPTENKNNAHFSTETQETGTDIAIPNSNGFVDATGDLHPDLVVKSIAAEDKGVVFEIWKQNKKDMELAGTLLMFEDKNIEMVGQVSFADIDNDETMDLIVPICLKKDCEHSKIYSHSLSMLNGKFITTWQLLL---SNENSDWKFDP----ETFTKGKIPFMLNFGDFIMDGKIDAVAILQKKDDGTPFAVQLVNQPCSPASHKCNGARS-----FRIAEIKTKGYPTSVSLMDVYENGALDFMVSYEIKTQKKTIKGMQVLRNDYNSDAAFLKVAVLSG------DKTSAKYGSNLAGATVIIQTTDTDDNALVRKATQLSQTAYFSLSLPYVVFGLGRSPNFVEKITVGVCQSDNPKIDRVRTWASIIPNSQVIVIPTPKDSPSDWVTRLLVTPSKILLQTAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHKFHFDAL 1834
++ + T+E+ A+ G +A +GD NSD+ TD+FV+ ++ + V+L + +N + K V +N I ++VP D++GD MD+L++ +K + + +++G ++L ++ L +D+P + D NGD +PD+FG L GN ++ + T +K + IP+S+ F+D T D DL + ++ A FEIW+ D + + ++ + +N+ +VGQ +FAD D D MD ++P C K+C+ S IY L + W +L SN+ + W F P + T+ IP L+ GD+ MDG DA+ IL+ A L N PC+ AS C AR + + ++ + D+YE+G LD +V K K + L+N++ +DA F+KV VLSG + +G N G ++ T D + A QLSQ+A+ +L LPY V GLGRS NF++ + VG+ + K R + W +IIPNSQ+IVIP P + P W +L +TPS I+L TA LIG C+ I +I ILH +EKK D+REKR+EAH+FHFDA+
Sbjct: 33 ALHNVTAELFGAEAWGTLAAFGDLNSDKQTDLFVL-RERNDLIVFLAD-QNAPYFKPKVKVSFKNHSALITSVVPGDYDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQPQILLGGNLSWHPALTTTSK---------------MRIPHSHAFIDLTEDFTADLFLTTLNATTSTFQFEIWE--NLDGNFSVSTILEKPQNMMVVGQSAFADFDGDGHMDHLLPGCEDKNCQKSTIY------LVRSGMKQWVPVLQDFSNKGTLWGFVPFVDEQQPTEIPIPITLHIGDYNMDGYPDALVILKNTSGSNQQAFLLENVPCNNAS--CEEARRMFKVYWELTDLNQIKDAMVATFFDIYEDGILDIVVLS--KGYTKNDFAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYLKNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWSAKLYLTPSNIVLLTAIALIGVCVFILAIIGILHWQEKKADDREKRQEAHRFHFDAM 612 The following BLAST results are available for this feature:
BLAST of TCONS_00066636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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