TCONS_00066670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066670
Unique NameTCONS_00066670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066670 ID=TCONS_00066670|Name=TCONS_00066670|organism=Clytia hemisphaerica|type=transcript|length=1641bp
CTTTTTTCAACGTAAAGCCTCGCTTTCATTTTGCGCGGGAAAGAAGCCAA
TCTCAGCTGCAAGACCAGctttttgagtggtttttggaaattttagaacC
AAAAAATACAATACGTAGTACAGAAACACAGAAATCATGAATGGTTCTGT
TAAAAACATTcaagacattttcaaaaagatggAGAAAGTTGGTGAAGGCA
CCTATGGAGTTGTATACAAAGCTCTAGACAGGCAAACTGGTAAAGTTATT
GCACTGAAGAAAATAAGATTGGATGCTGACACTGAAGGGGTTCCAAGCAC
AGCAATCAGAGAAATTGCAACACTGAAAGAACTCAATCATCCCAATATCA
TCCAGTTGCATGATGTTATCCACTGCGattcaaagttatttttggttttt
gagtttttaacaCAAGACCTCAAGAAATACATGGATGATGTAAAACCTCC
TGGAATCAAACTCAGTCTTGTTAAGAGTTACCTGTACCAGCTGTTAAGCG
GGATAGCTTACTGTCATGCAAATCGCGTCTTACACAGAGATTTAAAACCA
CAGAATTTGTTGATCGATACTGAAGGCAATATAAAACTTGCAGATTTTGG
CTTGGCACGAGCGTTTGGCATTCCAGTTCGTTCTTACACTCACGAAGTTG
TCACCTTGTGGTACCGTGCACCTGAAATTCTCCTTGGTTGCAAAATGTAT
TCTACTGCAGTCGATGTCTGGAGTATTGGTTGTATCTTCGTTGAAATGCT
CACAAGAAAAGCATTGTTCCCTGGAGACTCAGAGATCGATCAACTCTTCA
AAATGTTCAGAGTACTTGGTACACCAAACGAGAAACTTTGGCCTGGTGTC
ACCCAACTGAAAGACTACAAATCTGATTTTCCGAAATGGAATCCGAAAGA
TCTCTCCGAAGTTCTACCTGAATTGGACGATGATGGTATTGATCTTTTAA
AGATGCTATTGACTTATCAACCATGTCGTCGAGTTTCCGCCCGCAACGCG
CTCGATCATTCATACTTTAATGACATTCGTAACACTGCTGTCTCGTAATA
CACCTCATTGACGCATGCACAGTTCAATATTTGGATGTAttcgttgaaga
tattttacAATGGTAAAGACACGAGAGAGGTTTTGTATTATCGTTGAGAG
AAGTTGTGACAAAGAGGTTTGAGAATTTTAACGTTCCgtttctttttgga
ttttaacCGTTAAAGCATGTTGCTTAGCTGTTTGGCTACATTATAAATAC
TTCATGTTTGTTGTGTTTGAAGCAATAAATGGACCATATGACATTAAATG
TTGGGTAATGAATAATGGCGATTAGTTCATATTTATCCTATCAAAGATGA
TTGATTTGAGtgtctaaaatatttttcaaaaaataaattcaattgTATAA
ACTTAGAGGGCTTATTTGGGTTTATGGGGAGGAAGAAAACATTGTTCATT
GGCACTCGCTTCTTCACAACATATTAATACTACTGACTGGTTTAGCGTTA
AGAAATTAGAGATTTTTCAACTAAATGAATATTTGGCACTTGctagaaat
tgaaaataaacaataaattaGTTGCCATAGGATGTACTATTAATCATATT
TCTTACCATTTTTGGCATTTACTTTTGATTAATTCTCGTGT
Run BLAST on NCBI

protein sequence of TCONS_00066670-protein

>TCONS_00066670-protein ID=TCONS_00066670-protein|Name=TCONS_00066670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MNGSVKNIQDIFKKMEKVGEGTYGVVYKALDRQTGKVIALKKIRLDADTE
GVPSTAIREIATLKELNHPNIIQLHDVIHCDSKLFLVFEFLTQDLKKYMD
DVKPPGIKLSLVKSYLYQLLSGIAYCHANRVLHRDLKPQNLLIDTEGNIK
LADFGLARAFGIPVRSYTHEVVTLWYRAPEILLGCKMYSTAVDVWSIGCI
FVEMLTRKALFPGDSEIDQLFKMFRVLGTPNEKLWPGVTQLKDYKSDFPK
WNPKDLSEVLPELDDDGIDLLKMLLTYQPCRRVSARNALDHSYFNDIRNT
AVS
Run BLAST on NCBI

transcript from alignment at scaffold_458:154365..165621+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066670 ID=TCONS_00066670|Name=TCONS_00066670|organism=Clytia hemisphaerica|type=transcript|length=11257bp|location=Sequence derived from alignment at scaffold_458:154365..165621+ (Clytia hemisphaerica)
CTTTTTTCAACGTAAAGCCTCGCTTTCATTTTGCGCGGGAAAGAAGCCAA
TCTCAGCTGCAAGACCAGctttttgagtggtttttggaaattttagaacC
AAAAAATACAATACGTAGTACAGAAACACAGAAATCATGAATGGTTCTGT
TAAAAACATTcaagacattttcaaaaagatggAGAAAGTTGGTGAAGGCA
CCTATGGAGTTGTATACAAAGCTCTAGACAGGCAAACTGGTAAAGTTATT
GCACTGAAGAAAATAAGATTGGATGCGTAAGCTATTTgagctttattttt
tttttaatatactgTATCCAGTGTTttttataccgtgagattgggtaact
tgcatcagtggaggctaacatgcatagccctcaaatgaaagacctggctg
gtcattaaaatacaaagttgaatcaaaacaaaaatggtagggtagagctg
cgagcggagctgcgtagttgtattttaatgaccagacaggtcattcattt
gagggctatgcatgttagtctccattgatgcaagttacccaatctcacgg
tagggCCTGTTATTTAGGTTTTCTATGTCTATATGGGTTTTATGATTACC
TTAACTTCGTATAATACCGACATACCCTGTCTAATAACCAGGGGGTGTca
gtcaatcgaactgttcgcttatcgaactaatcgaactgttcaattatcga
actaatcgaacttaatcgaaccctatcgaacgatagctgttcgattatcg
aacccAATCAAACACCTATCGAACAAGAAaaactttcgtaaagttcgatg
acTGTTTGATTATAGTTCAATAAAGTTTGATCACAGTTCGGTGAATCCGA
Ttgaggttcgatcagttcgattgagatcgatgaagttcgattggttcgat
tagttcgatttacaccttgccgcccaattttttattacgtattggcggcc
gcccacgggcCATTCTTGCGGGGGGGGGCCATCCAATGTCTATCCCATCA
GGCATCAGATAggacaagctggagcttttacaagctctttcatgatttgg
ttggttgttgCAAAGGTACATATTTGCCATGCAAATTACATCACTGTCTG
GCTGGGAATCCTCATATTGGACGGCAAGATTAATTTCCACTGCACATTAC
ggtgcctgtgttttgattaaacaaccttgtaattttctgaaaggtaacAA
CAAGGATGacagttacctgaatcaagttcaagatcccaagacaatcaatt
aaaacttgaaaacttaaaatgagacaaaatgacagattgcgaacgtgcag
cagccaaatatcaaccaaccagattttgtcattcaattcccgagacagtg
cttcgatttttaaggccttgtttatacgctaaagcaaaaataattcGGCA
CATGtgaatgggtcattgtttgaggtccggcaaaatttccgggaaatagc
ctatccggcgatGTGCGgctctaggtgggttccgcctcccctgtagatct
ttttcttgggaagttgatcttcaaattagttttcaaggttggcttggctc
aaatttttttcatctatggcttaaattttaggcaatttctcaaagttttt
gaaaatgttaatttcattgaaaagtgcctggttattttttcatgaattcc
tttagaagttttgcggcgcatttttttgcttgagagtcaagtaaacgata
tagcgctttcgcagcattaatctttgatacgcattttggcgggatgctag
tgtgactaactgacaatCATCGAACCACATCAAACTTAAATCGCATTGaa
ctcatcgaacatcaatcgaaccctatcgaacatcaatcgaacttcatcga
acaaagaaCAGTCATCAaactaaatcgaacttatcaagaaattttcataa
agttcgatcagctatcgttcgattttgttAGATAAGGTTTGATGGTTCGA
TTACGAAAATCAGTTAGATAGGGTTTGGTTGACACCGCCTGGTAATAAGC
AGCTACTGTACGTATGTATCTGGTCTTTTGAATATATAAATGGGCTTATA
TTCTTCCCACCCAtgccagtttgcagagtatgaCAAGGCTGCACTTGAGG
ACAAATTCGGAAATACCAAGTTCTGCACTGAAATAACGTgcctgataaat
tttggtccagacaaggtgcacctatacctcaaaattttgccaaaaaggca
aaaaaatgctaaaattagCTGCACTGGAGGAAAAAATAGCTGAACTCTGC
ACTTGAGGCTAAAAAATTGTCTGAACTTGCAcctgaaaacatcaaattta
caCCTGCACTTGACTATTCCGAGTTGTGCACTCGAGATCTTGAGCAAAGG
TGCCACACTGCTCTGCAAACTGGGGCCATGTACGATAGCGGTAAAATGGA
TTGGTAAAATGGATTGGTAAAAAGCGTATCTAAACCCAAATTTCAGTGCA
CAAGTATTCAGCAGCAGTCCAGCTTTCCTATAATCATAATTTCCCAGAAG
TAGCCTgagaaaatgtgcgctccaccacATTGTGAGGGAGGTAATCAAAC
ACATTTTTGCTTGTGAGGGGTTAGGGCGGGAAACAACTTAAAAAAGTTAT
TTCTGAATATAAACCCGggaaaatctaggaaaaacgcAATTAAAAAATTA
GACCAGGCCATGTCAACAGAAACCAATCAAACCAATTTTTGTAACAGAAC
CATCTGGTTTGGCCAGGTTTTCTGGGGGagaatccaaaattttttggcct
aaacttgGCCTGATCTTACCCCATACATCAATCTCCTGGTCAAAAAGaat
gttttgctttattttgacCCAAACATGACTGGACTTTTTTCAGGGTATGT
TTGGGCTATAATGTGGGTAGTAAAAACTACGAGAATGAAAAATACGAGCT
AATACATTAACTCAAACAAATTGGACTAATCAAAATATACCGGAAGTTCT
TCAGTATATGAAAAGTCTTAattccgtctcaaaattctgcataattcatC
AACAGTTCAAGAATATGTGCCAATTTGCTGTGTTAAATCGATTTTATCAG
CAAAAAGGTCATAGAAACtagttcaaatttaaaaatttcgaaatttaatt
ttttcaagatggcggcacCACTGCAGCTTGGATTGCCATTTTGTCtgatt
tttcaactttcttttgcCTTATTGGCCCCACCCTGCCAGACGCCATCTTG
AAATAGCCtcattttgggaaaaactttttttgaggcTTGTTAAATAGTTT
TCGAGCACCAGGAAATAAATCGGCAGGGGGTAGGCAATTTTGCCCCCCCC
TGGGCCAGGCAGGGGTAGAGAATGTAGCattacttttgaatttttatgat
gGTCTTTAACTGAAAAGTAGACACCATATTTTTAAGGATGGATAGGGTTG
AAggtaatttcaaattatttaagAGGCCTTTAAGAGATATTTGgaagatt
ttcttcttttagtttCAATTAAAACACTTTATCAAGGCTAAAGGTAAATA
GTTCACTGTCTTTTGTTCAGAATTTTATCCTTCCTTAGTATTCTAAAGAA
GAAGGTTTGATTTCTTTTGAAGTTATAATTTGAGAAATTCCACATCAAAC
AGGGTAATTTATTTCTGGCACACCCAGtacttcaaaaataatttcatcaG
TTCCATCTacataaaaacttaaaaattgtcTCAGTCTTTTCTCATGATTT
ATAGCAAAATATTATGAGGACGACCAAAATCTGAGAATATATCCACATCC
TCAACTTTTCAGAAAATCACTCTTCAGGGTAGAAGATTTTTCAGAAAGAA
TCCCATTTCAATCAGTTTCAATGGGAATATGATTAgagagatttttttat
ttttagacaaATAAATTTCATCTATTAAATTTGTTTCGTCTAAGGTCTTT
AATGAACCTTCAAATCAAACTACTTTTCTCTTCCTACATACATTGATGAT
TTCTGTTTTCCATTTTAGTGACACTGAAGGGGTTCCAAGCACAGCAATCA
GAGAAATTGCAACACTGAAAGAACTCAATCATCCCAATATCATCCAGTAA
GAATCTTCAATGTTTGATAAATAATACTATTCTGGATTTAATGTCCGTTC
GCATTAAGTGTGTATCCGTTCTTGTCTTGCTTGTCAATGCTTATAAATTC
ATGggctacacaatatattggtgagcaatattcgacaatatagttctcgg
accgtaatgtacggagTAAACAacaggtactctattataaaaaggagttt
tctttttgtaaacaatTTCCCTATTTTGTTAGAATATTGCAATCGagttg
acaatatattgcgggcATTCAGCAATAATACTACCAATATACTACCTGAT
AATaaattgtgtagtgtatgtagcccttaaaaacttataccgggtgtccc
agaaaaaagttcagctctttgaagtgaaatttctcgagttctatgaattt
ttaaaagatcaatttttttgcattggaaagaggaaagataaacttaaatt
ttgaggggtcatttatcaaatttggtcaactagatcaaaaattatgctga
tatgaataaaaatttcacattttgaaaaGGCTCAAAAACGACCTATAAAA
TTTTATAACCTATTTATTACTTTTTTGCAAGAATAAAGAGTTTAAAGTgg
acatgaaaacaaaaaatgcttgaaataaTTCACTAAAGgactaaaaattt
tcatttgggtcatttcaaattattttctatgGAATTCAGCTTCAAGTTTT
GGCTTAAGGACCCCTAAAGTCAAAAGTAGCGCTGATTTCATCAGTGTAAC
TATTGAAGTCAAATATCGGTTGGAATTATCAAATGtttcagtttttcaga
taaatttctttgtttcaCCTTTgggaaaaattatttcaaaagctTTTGAT
AATGAAGATGATAAATGAAGTAGAATAAAAACAATCTTGCTTTGCTTTAG
TGGTACCAGAGGCGTCCTTCCTGATTTTTGCtgtgtaattattttttttc
tcataaaattCTTGCATCGAAAGTCACAGCCtctgttttttgctgttttc
caCTTCTACAGATCAAACTGGATCAAGAATTAGTTTTGGTTGAGTTCTTT
CAGTGTGATTTATGCACATCTAATATGCTTTTCCATTATTTTTCTGTTGA
CACCCTACTGCTTTTATTTCCAGGTTGCATGATGTTATCCACTGCGattc
aaagttatttttggtttttgagtttttaacaCAAGACCTCAAGAAATACA
TGGATGATGTAAAACCTCCTGGAATCAAACTCAGTCTTGTTAAGGTATAT
TTAATTTTTCTCATAACGGCTAGAACAAACTATCCCCACTGGATTAAAAT
GCAGCTTAAACCACTGATATGTTGCTACTTGACTTGATCGGGCTTGCCGT
ACAAAAGGACTGgacgaatgttttgaaattcaacgATAAAAAATGTAAGA
TAAATTAGAAAACAACATGGCACACAAGTCGACTTAAAAACTGGACACGC
TTTCACGAGAAATCTGTAGGTCTAGCTAGTGTATAGAGGAATATGATATT
TGTAGCTTTAGCCCGATAAATTAGAAATCCTAGCTATCAAGGAGGTATTT
TCCATCGctatcagtattttcgtttttcGAATTCCTCTCCACTGGAAATG
TTTCTTCGGGCTCAAGCACAACTACAAaggttaattttttgaaaagcaaA
GATATACTTATTTTCAGCATAGAAAGGTGCACGGGATCTTTTTTATTCAC
TTTTGTAATCTAGTACTCTCTCTTTTAGAGTTACCTGTACCAGCTGTTAA
GCGGGATAGCTTACTGTCATGCAAATCGCGTCTTACACAGAGATTTAAAA
CCACAGAATTTGTTGATCGATACTGAAGGTTTGCTTATTTTTACCGCAAT
CACTTACGTAGTATAAATgcatttgatctttttttgattttttcttatac
ATTACTCCTTTATCATCCTTCCAAATGCTTCAAATTACCTTATCAGCCCT
CTTTTACCTCGGCCCTTAATCCGCCACCGTCCCATTTTCAGATTAAACCA
ACgagggccgtaaataacgcgACAACCTGCAAAAATCACTAAGGAGGGTT
CAAAATAGTTAATATTGACTTAAATTGGCCTTAAATGTCATACTTCTGTT
TTAATggctttttctgaaaatttggaTATAAAGTAAtaacattagttttt
ttttctcacactTTAAATCCTCTTATTAGGGTGAAATAGGTCAAAAATTA
ACATCGCTTTTAGAGTTTAACTTTGACCCTTTTTACAAGTGTTTTTATGG
TGTGCCCGTCAAAGGCGTCCTTAATGAATAGTAGCtgattttcttttcga
aaaattgttctcaGTTATTCgatttttatatttcaaattcagTACAAATC
TGCTTAATATTATGTTATCGAGACAAAATACGGATCTCGCTCAACAACTG
TATTATTTGTTCGTAGAAATTTAAATATTCGGAAGCTATTCACTCCGTTT
CAGGCAATATAAAACTTGCAGATTTTGGCTTGGCACGAGCGTTTGGCATT
CCAGTTCGTTCTTACACTCACGAAGTTGTCACCTTGTGGTACCGTGCACC
TGAAATTCTCCTTGGTTGCAAAATGTATTCTACTGCAGTCGATGTCTGGA
GTATTGGTTGTATCTTCGTTGAAATGGTAATCGATTTTTTGGGATTTCGG
GAACCATGATATTTTCAAccactctcgcttattcgaacttctattgtCCT
ATTGTTCCAGTCTCCGCCAAGGAAAAAtattctctataattcgaatttct
ctgttattcgaacaaataagattcacCACTTGAGTTCGAATTAACGAGAG
CCAACTGTACAGCTACCGCATGCGGTACTCTAAAATGttgtaaatttaat
ttttggaatatgttttcgtgacttttcatgaattttaattttggacCCAG
AGCGGTACACCTTAGAATTAAAATTGTCAGATTTAAAAATGATCCAGAAT
TTTTCCAGAAGTTTGTTCAGTATCTAGTCTCAAGCTGCAACAAACTAAAC
AAAATTTGGAAGTCTAATCTAGATAATAAGATTAAGGTACAAACCTTCAA
AACCTTAATCGAGCCTATTCTCCTTTATGGGTCGNAGGCTACGCAAATTT
TCCGACGTAAgtcgaaagatgatgatgatgatgagtctcaagctagacga
ctaattcagacatattagaaataaagcaaaaaagtaaattttagtcgtct
agaaacctttgtgcactaactccaaacaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcgtttatacaaact
aaatcccgtatcattatttgtgtttattattagtattacatgcattataa
acgactccagtctattcAGTATctaaaaaatatcttaaattGTCTTAAAT
AATGAAGTAACCCTGGTTGCACATCTTCCACTTTTACCGTTTTCTTATGT
GCACTGTTTTTCTTTAGCTCACAAGAAAAGCATTGTTCCCTGGAGACTCA
GAGATCGATCAACTCTTCAAAATGTTCAGGTACAATTATGATGAACTAAA
ATAGTACAGTAGTTCAATTGCTATCAAATCATTCTCATCATTTATGTGTA
TTATTATTATCTGCAAACACGTGTTTCTTCATTTCTAAAGGGACCGCAGT
GTAgtgttgtgggttcaacccccagtcgggtcataccaaagattctcaaa
aaggtacttgatgcttctctgcttgatgctcagcaattaagagaaggatc
aaggggaagttgagcaatccagggagaaagagtggcgctcTCCCCTaccg
ggtagatagctatcgaaagaggagccttcgggtcgcctccgactgcggtc
gcagacttacctTGACTCATTTCCAGGACTCATCAGTGCAGCTCTGTAAG
TGAGCATAGATTGCACTTatagtactttaatgggataaattttcgcggga
ttaaatttcgcggttgagctcatccgcgaaattttaagatttcgcgggga
ttaattttcgcggatgagggatttcctgatttttcgcggggatttaatNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaatttccaatgggacttat
tttcgcggatgacacccaaatccgcgaaatccgcgaaatccatTAAAGTA
TATTCCTAAAGTGATTATGGTGACTTATGATTTGGTCCAATAATAAGGTC
CAAATCCTTAggtatttcaaataaaagatttttctttgatATACAGAGTA
CTTGGTACACCAAACGAGAAACTTTGGCCTGGTGTCACCCAACTGAAAGA
CTACAAATCTGATTTTCCGAAATGGAATCCGAAAGATCTCTCCGAAGTTC
TACCTGAATTGGACGATGATGGTATTGATCTTTTAAAGGTATAATGCATT
TTCGAATAATTCACCGATTGATTTAGTtaagatttcaaatttgaatatat
tgaTATCTATTATATTGATATTTatatctttttggacctaccccggtggg
gtggaggtcctataaattaacctttgtccgttcgtccgttcgtccgttcg
ttcgttagttattagctttcctcgtNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtg
ttctgaatgattgtttaatggtcacgtcacgtagatatcaattatatatg
tgttaaatgcataaccaggtaggtccataaaagtatcacttgtttaactT
GCGAAGCACAATGTCCTCTCATTCtgattaaagatttaaaaagatatatt
tttttttctcactatTAGATGCTATTGACTTATCAACCATGTCGTCGAGT
TTCCGCCCGCAACGCGCTCGATCATTCATACTTTAATGACATTCGTAACA
CTGCTGTCTCGTAATACACCTCATTGACGCATGCACAGTTCAATATTTGG
ATGTAttcgttgaagatattttacAATGGTAAAGACACGAGAGAGGTTTT
GTATTATCGTTGAGAGAAGTTGTGACAAAGAGGTTTGAGAATTTTAACGT
TCCgtttctttttggattttaacCGTTAAAGCATGTTGCTTAGCTGTTTG
GCTACATTATAAATACTTCATGTTTGTTGTGTTTGAAGCAATAAATGGAC
CATATGACATTAAATGTTGGGTAATGAATAATGGCGATTAGTTCATATTT
ATCCTATCAAAGATGATTGATTTGAGtgtctaaaatatttttcaaaaaat
aaattcaattgTATAAACTTAGAGGGCTTATTTGGGTTTATGGGGAGGAA
GAAAACATTGTTCATTGGCACTCGCTTCTTCACAACATATTAATACTACT
GACTGGTTTAGCGTTAAGAAATTAGAGATTTTTCAACTAAATGAATATTT
GGCACTTGctagaaattgaaaataaacaataaattaGTTGCCATAGGATG
TACTATTAATCATATTTCTTACCATTTTTGGCATTTACTTTTGATTAATT
CTCGTGT

Coding sequence (CDS) from alignment at scaffold_458:154365..165621+

>TCONS_00066670 ID=TCONS_00066670|Name=TCONS_00066670|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_458:154365..165621+ (Clytia hemisphaerica)
ATGAATGGTTCTGTTAAAAACATTcaagacattttcaaaaagatggAGAA
AGTTGGTGAAGGCACCTATGGAGTTGTATACAAAGCTCTAGACAGGCAAA
CTGGTAAAGTTATTGCACTGAAGAAAATAAGATTGGATGCTGACACTGAA
GGGGTTCCAAGCACAGCAATCAGAGAAATTGCAACACTGAAAGAACTCAA
TCATCCCAATATCATCCAGTTGCATGATGTTATCCACTGCGattcaaagt
tatttttggtttttgagtttttaacaCAAGACCTCAAGAAATACATGGAT
GATGTAAAACCTCCTGGAATCAAACTCAGTCTTGTTAAGAGTTACCTGTA
CCAGCTGTTAAGCGGGATAGCTTACTGTCATGCAAATCGCGTCTTACACA
GAGATTTAAAACCACAGAATTTGTTGATCGATACTGAAGGCAATATAAAA
CTTGCAGATTTTGGCTTGGCACGAGCGTTTGGCATTCCAGTTCGTTCTTA
CACTCACGAAGTTGTCACCTTGTGGTACCGTGCACCTGAAATTCTCCTTG
GTTGCAAAATGTATTCTACTGCAGTCGATGTCTGGAGTATTGGTTGTATC
TTCGTTGAAATGCTCACAAGAAAAGCATTGTTCCCTGGAGACTCAGAGAT
CGATCAACTCTTCAAAATGTTCAGAGTACTTGGTACACCAAACGAGAAAC
TTTGGCCTGGTGTCACCCAACTGAAAGACTACAAATCTGATTTTCCGAAA
TGGAATCCGAAAGATCTCTCCGAAGTTCTACCTGAATTGGACGATGATGG
TATTGATCTTTTAAAGATGCTATTGACTTATCAACCATGTCGTCGAGTTT
CCGCCCGCAACGCGCTCGATCATTCATACTTTAATGACATTCGTAACACT
GCTGTCTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041704XLOC_041704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066670-exon-scaffold_458-1491911889:154365..154640TCONS_00066670-exon-scaffold_458-1491911889:154365..154640Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:154365..154640TCONS_00066670-exon-scaffold_458-1510915933:154365..154640Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:154365..154640TCONS_00066670-exon-scaffold_458-1575043694:154365..154640Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:158333..158410TCONS_00066670-exon-scaffold_458-1491911889:158333..158410Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:158333..158410TCONS_00066670-exon-scaffold_458-1510915933:158333..158410Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:158333..158410TCONS_00066670-exon-scaffold_458-1575043694:158333..158410Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:159538..159658TCONS_00066670-exon-scaffold_458-1491911889:159538..159658Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:159538..159658TCONS_00066670-exon-scaffold_458-1510915933:159538..159658Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:159538..159658TCONS_00066670-exon-scaffold_458-1575043694:159538..159658Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:160143..160242TCONS_00066670-exon-scaffold_458-1491911889:160143..160242Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:160143..160242TCONS_00066670-exon-scaffold_458-1510915933:160143..160242Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:160143..160242TCONS_00066670-exon-scaffold_458-1575043694:160143..160242Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:160868..161040TCONS_00066670-exon-scaffold_458-1491911889:160868..161040Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:160868..161040TCONS_00066670-exon-scaffold_458-1510915933:160868..161040Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:160868..161040TCONS_00066670-exon-scaffold_458-1575043694:160868..161040Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:162132..162193TCONS_00066670-exon-scaffold_458-1491911889:162132..162193Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:162132..162193TCONS_00066670-exon-scaffold_458-1510915933:162132..162193Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:162132..162193TCONS_00066670-exon-scaffold_458-1575043694:162132..162193Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:164061..164202TCONS_00066670-exon-scaffold_458-1491911889:164061..164202Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:164061..164202TCONS_00066670-exon-scaffold_458-1510915933:164061..164202Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:164061..164202TCONS_00066670-exon-scaffold_458-1575043694:164061..164202Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1491911889:164933..165621TCONS_00066670-exon-scaffold_458-1491911889:164933..165621Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1510915933:164933..165621TCONS_00066670-exon-scaffold_458-1510915933:164933..165621Clytia hemisphaericaexon
TCONS_00066670-exon-scaffold_458-1575043694:164933..165621TCONS_00066670-exon-scaffold_458-1575043694:164933..165621Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066670-proteinTCONS_00066670-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:154365..165621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
70.4352	71.0531	150.496	146.853	3.47468	3.16816	5.00078	4.62203	7.55761	8.12004	5.17067	6.25349	4.54767	5.33881	6.62605	6.8994	9.7456	9.62673	1.81721	1.92914	6.06032	5.7134	18.0665	18.956	26.3338	25.3777	1.93637	2.13906	8.41447	9.69367
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00066670 vs. Swiss-Prot (Human)
Match: CDK2 (Cyclin-dependent kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 443.736 bits (1140), Expect = 7.767e-153
Identity = 204/286 (71.33%), Postives = 247/286 (86.36%), Query Frame = 2 
Query:  170 FKKMEKVGEGTYGVVYKALDRQTGKVIALKKIRLDADTEGVPSTAIREIATLKELNHPNIIQLHDVIHCDSKLFLVFEFLTQDLKKYMDDVKPPGIKLSLVKSYLYQLLSGIAYCHANRVLHRDLKPQNLLIDTEGNIKLADFGLARAFGIPVRSYTHEVVTLWYRAPEILLGCKMYSTAVDVWSIGCIFVEMLTRKALFPGDSEIDQLFKMFRVLGTPNEKLWPGVTQLKDYKSDFPKWNPKDLSEVLPELDDDGIDLLKMLLTYQPCRRVSARNALDHSYFNDI 1027
            F+K+EK+GEGTYGVVYKA ++ TG+V+ALKKIRLD +TEGVPSTAIREI+ LKELNHPNI++L DVIH ++KL+LVFEFL QDLKK+MD     GI L L+KSYL+QLL G+A+CH++RVLHRDLKPQNLLI+TEG IKLADFGLARAFG+PVR+YTHEVVTLWYRAPEILLGCK YSTAVD+WS+GCIF EM+TR+ALFPGDSEIDQLF++FR LGTP+E +WPGVT + DYK  FPKW  +D S+V+P LD+DG  LL  +L Y P +R+SA+ AL H +F D+
Sbjct:    4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289
The following BLAST results are available for this feature:
BLAST of TCONS_00066670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK27.767e-15371.33Cyclin-dependent kinase 2 OS=Homo sapiens GN=CDK2 ... [more]
back to top