TCONS_00066704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066704
Unique NameTCONS_00066704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066704 ID=TCONS_00066704|Name=TCONS_00066704|organism=Clytia hemisphaerica|type=transcript|length=535bp
aggaagaaaataaaaataacttcaAGATTGCTACCTTACTGAAAAACGAG
ATGTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAAC
AGCAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAGCTGAAAC
AACGTGTTGGCAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTT
GTATTCAACTTCAATAAGCAACAGGCATCAGCAACAAGACTGCATGCAGA
GCTAAAGAATTATATGCGGTGTATTACtgCTATGCAAGTTGCTCATACAA
ATTTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGATTGGAGTTGTCGT
CCAAAAATGGTTGATTATTTTAAGGAATATGACAGCAACTGGACAAAACT
AAGGCACCGTGTTTCTGAAGAAGTTCTTGAGCCACTTACGTCCTACCTCA
AACCCTTTCCAGATGTCAAGacaaaaatcagcaaaagaGCAAGAAAATTG
GTAGACTATGATCATTCAAGGCATGCAGTTGACGT
Run BLAST on NCBI

protein sequence of TCONS_00066704-protein

>TCONS_00066704-protein ID=TCONS_00066704-protein|Name=TCONS_00066704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
EENKNNFKIATLLKNEMSEKNDGKSERGLLARTATYTSKKARRAQTKLKQ
RVGKGDETKDEVFDEFVFNFNKQQASATRLHAELKNYMRCITAMQVAHTN
FGEAVKEVYESDWSCRPKMVDYFKEYDSNWTKLRHRVSEEVLEPLTSYLK
PFPDVKTKISKRARKLVDYDHSRHAVD
Run BLAST on NCBI

transcript from alignment at scaffold_458:103464..107214-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066704 ID=TCONS_00066704|Name=TCONS_00066704|organism=Clytia hemisphaerica|type=transcript|length=3751bp|location=Sequence derived from alignment at scaffold_458:103464..107214- (Clytia hemisphaerica)
AGGAAGAAAATAAAAATAACTTCAAGATTGCTACCTTACTGAAAAACGAG
ATGTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAAC
AGCAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAGGTATTGT
AATTGTTTTTCAAACATTTAATGGTCTTGAGCTGGTCAAAATATAGTCCT
AAACTCAAATCAAAAATTAAACAAAAACTTTTATCAAGGATACAACACAT
CTGATAAATCCTGCATAGTAACTAGCCAAGCTTTTTTTTTAAGATGCAGG
GTATATTTAAGCACTTAGAAAATACCCAGACAGTGATATAGATATTGTTA
ATGGCATATACTTTTCTCCTCTTTTTGCATGCTGCAATTACGCACAAAAT
TTCTTTGACAAATAGAAACTTTTAAGTAATTTAAAAGAGAATTGAGGTGT
ATCAAATGTATTTCCTGCACTCCTAGAATGTTCTTCATTGTGATTTATAG
AAATATTATAGTCAAGTTTTATTCTTTGTTTCAGCTGAAACAACGTGTTG
GCAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTTGTATTCAAC
TTCAATAAGCAACAGGCTAGTTAAAATATGTTATTAGGATAAAACGAGGA
TTTTTGTCTATTAACTATGATGGTATTTTTTCTTTAAAAAAATATTTTTT
TAATGCAGCTAACACTACAAAAGAGGTTTTTGGAACTGATGAAATCAAAT
AATGTTAACTAGGCTGCTGAATTGAAATAATTACATAATAACAATGGTTT
TTATTCAGGCATCAGCAACAAGACTGCATGCAGAGCTAAAGAATTATATG
CGGTGTATTACTGGTAAAATTTGTTTAATAAAATATACACCTTAACTTTT
AAAAATAAGATTTTTTATTAAATAGCCCCATAAACTAAGTTGATATCTTA
AATGAAGAAATTTTGTTGCAAATTTGATTTGACAGATGGCCGATTGTCTT
TTAAAAAGAGAATTCAATTTGTTTTTTTTGGATAATAATCTTTTAAAAAC
CTGTTTCAAAAATTTTTGCTGTATGTTTTGAAAAGATTATTTGTATTTGT
TTTTTTGAGCTTGCCCCCTTGCTTGAAAATGGCCAGAGAAACTTAATTTG
GTGGATTTTGGATTTTGGATAAATCATCAGATTTTCTTTCTGTCAAAATT
TCCCGGGGGGGGGGGGGACTAGGGCAAAATGGGTTAAGGGGATGCTCCGC
TGGTCAGGGTATCTTTTTCAACCTCCACGAGTCCCAGGTAGGGTCGCAAA
AACACCAAAATAGAAAAATCAGTCCCTCGTAGGGTGCCTATTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCAGTCCCTCGTAGGGTGCCTATTTTTGGAAAATTTGGGGAAAAAGTA
GAAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTT
CGAGTTCCACCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCC
GTCGGTCGACAAGGGTAGTACCCCCCCGGGCAAAATTTCTTCTTTCAACT
CAAGCTAGAAGTCTGATCCTAATTAGTTTGATTTGTTTTTCCAATGTCAA
TTTATCTGTACGTATGTTTCATTTATCTGAAACAATTGTTAAAAGTAGTG
CTTTTGAAAGCTTTTTGCAACCTTTTTTGATTCATTTTTTAGCTATGCAA
GTTGCTCATACAAATTTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGA
TTGGAGTTGTCGTCCAAAAATGGTTGATTATTTTAAGGTAACTTCACATT
AATTTAAAATCATTGATGTACAACTGACTGTAACAAAACTTCTGTGGTTC
ATTGGCAACATTTTACTGCATATTATAGTGTGCTATAGCCCAATATTTAC
ACTGGTTCACATTTACTGCCCATTTTACTATTCTAATTCTTTTTGGACCT
ACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTCTGTCCGTCTGTCCGT
CCGTCCGTCCGTTCATTACCAACTTTTCTCGAGATTGGCTCATTAGTTTT
TTCTGATTTTTTGCACAAAGATGCATAAACTATAAACCCTCGAATGTGAC
GGAGCCCGATTAAAAAAAAAAAATTTGGGCAAATTTGGGCAAATTTGGGC
CAAAAAACGGCTAAAAAATGGGTTTTTTGGACTTTGTGAAAAATTGGATT
ATTAATTTTTTATGGATTTTGGCATGAAAGTAGGGTACCATCATCAAAAA
TTTTGTTGGCTCAAAAAACACATGTTTATCTATAAGAATCACTATTAATA
AGCATACATCAATGTTCTTAGTCAAATTACTGAATTTTTTTTATGATATA
GATATTTTTTTTTCATGAGGGCAAAATTTTGGTTGCTTGGCGTGTTTTTG
GTAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATCAATT
ACTTAGGTATTAGCTCTTTTCGAGATTGGCTCTTTCATTCTTTATGATTT
TTTGCACAAAGATGAATAACTATAAACCCTCGAATGTGACGGAGCTCGAT
TTTTGGGAGAAAAAAAATTTGGGTAAATTTCAGCTAAAAAACGGTTAAAA
AAAGGGTTTTTTGGATTTGTGAAATATTGGATAATTGTTTTTTTCTTATT
TTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAGATTTTTCTGAAAAA
AATAACTTTTCAACTCAAAAAACACATCTTTATCTATAATAAGAATCACT
ATTAGTAAGCATACATCAATGTTCTTAGCCAAATTACTGAATTTTTTGAT
GAGATGGATGTTTTTTTTGCTCACAAAGTCTTGAATGTGAAAGAATTTTA
AAAGATCGTCACTATTTGTGTTCTGCATGATTATTTAATGGTCACGCTCA
TGTAGATATTAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCACA
AAAGTATCACTTGTTTCTTGTAAAAGTATGTTAGGTTTCCAACCACTTTT
TTTTTCTCGATCAATTCAATATTAATAACAACAATCAAGATTACTTGAGG
ACTGCCCTTATAAATTTTCCAAAATAAAGATTCCCTAATAATAGCATATA
ACTACTTATAAAGTTAGCTCATCTCTTAATTTTAACAATTAAAAGCATGT
GCTTCCAACTCATCCTTTATTACCAATCTCTATATCAATAGGAATATGAC
AGCAACTGGACAAAACTAAGGCACCGTGTTTCTGAAGAAGTTCTTGAGCC
ACTTACGTCCTACCTCAAACCCTTTCCAGATGTCAAGGTAAGTTTGTCAA
ACTTATTTATTTTTTTGACTTGACTGTAATGTGATTTAAAGTGACATTGC
CCTAATTCAGTGTTATAATTTTTCTGTTTATAGACGAAATCCTTTCAGTT
GAGATACAAATACACTATCATCATTGCCATTCAAAAGAGGATTTTGGTTC
AAATGACCCATTCTAATCCTAAAGTTAACAATCGAGACTCACAAAACTTA
GTTACAACACTGCTAAAATAAGTTTCAAATTTGATCTAGGTTGAAATTCT
TCAAATACAAAAGCGCTGTTACTCTCCAAAAATATGTTCACAAAATAAAG
GCTCTAATTTTGTCTCTGATTTTATCATCATTTTAGACAAAAATCAGCAA
AAGAGCAAGAAAATTGGTAGACTATGATCATTCAAGGCATGCAGTTGACG
T

Coding sequence (CDS) from alignment at scaffold_458:103464..107214-

>TCONS_00066704 ID=TCONS_00066704|Name=TCONS_00066704|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_458:103464..107214- (Clytia hemisphaerica)
GAAGAAAATAAAAATAACTTCAAGATTGCTACCTTACTGAAAAACGAGAT
GTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAACAG
CAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAGCTGAAACAA
CGTGTTGGCAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTTGT
ATTCAACTTCAATAAGCAACAGGCATCAGCAACAAGACTGCATGCAGAGC
TAAAGAATTATATGCGGTGTATTACTGCTATGCAAGTTGCTCATACAAAT
TTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGATTGGAGTTGTCGTCC
AAAAATGGTTGATTATTTTAAGGAATATGACAGCAACTGGACAAAACTAA
GGCACCGTGTTTCTGAAGAAGTTCTTGAGCCACTTACGTCCTACCTCAAA
CCCTTTCCAGATGTCAAGACAAAAATCAGCAAAAGAGCAAGAAAATTGGT
AGACTATGATCATTCAAGGCATGCAGTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041710XLOC_041710Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066704-proteinTCONS_00066704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066704-exon-scaffold_458-1575043694:107072..107214TCONS_00066704-exon-scaffold_458-1575043694:107072..107214Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1575043694:106600..106680TCONS_00066704-exon-scaffold_458-1575043694:106600..106680Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1575043694:106352..106406TCONS_00066704-exon-scaffold_458-1575043694:106352..106406Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1575043694:105378..105472TCONS_00066704-exon-scaffold_458-1575043694:105378..105472Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1575043694:103878..103973TCONS_00066704-exon-scaffold_458-1575043694:103878..103973Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1575043694:103464..103528TCONS_00066704-exon-scaffold_458-1575043694:103464..103528Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1510915933:107072..107214TCONS_00066704-exon-scaffold_458-1510915933:107072..107214Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1510915933:106600..106680TCONS_00066704-exon-scaffold_458-1510915933:106600..106680Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1510915933:106352..106406TCONS_00066704-exon-scaffold_458-1510915933:106352..106406Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1510915933:105378..105472TCONS_00066704-exon-scaffold_458-1510915933:105378..105472Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1510915933:103878..103973TCONS_00066704-exon-scaffold_458-1510915933:103878..103973Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1510915933:103464..103528TCONS_00066704-exon-scaffold_458-1510915933:103464..103528Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1491911889:107072..107214TCONS_00066704-exon-scaffold_458-1491911889:107072..107214Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1491911889:106600..106680TCONS_00066704-exon-scaffold_458-1491911889:106600..106680Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1491911889:106352..106406TCONS_00066704-exon-scaffold_458-1491911889:106352..106406Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1491911889:105378..105472TCONS_00066704-exon-scaffold_458-1491911889:105378..105472Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1491911889:103878..103973TCONS_00066704-exon-scaffold_458-1491911889:103878..103973Clytia hemisphaericaexon
TCONS_00066704-exon-scaffold_458-1491911889:103464..103528TCONS_00066704-exon-scaffold_458-1491911889:103464..103528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:103464..107214 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61186	3.71434	1.97152	1.32607	30.2325	24.9339	18.8885	24.7565	8.43702	16.3575	10.6949	6.52306	8.90246	8.26815	8.77501	10.279	10.0486	10.9694	8.2137	11.2583	7.36544	7.3905	5.61507	6.69311	12.7359	12.305	10.5949	9.55535	11.7166	14.7679
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003005Amphiphysin
IPR004148BAR_dom
IPR027267AH/BAR-dom
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00066704 vs. Swiss-Prot (Human)
Match: AMPH (Amphiphysin OS=Homo sapiens GN=AMPH PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.768e-32
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 3 
Query:   84 GLLARTATYTSKKARRAQTKLKQRVGKGDETKDEVFDEFVFNFNKQQASATRLHAELKNYMRCITAMQVAHTNFGEAVKEVYESDWSCRPKMVDYFKEYDSNWTKLRHRVSEEVLEPLTSYLKPFPDVKTKISKRARKLVDYDHSRH 524
            G+ A+      K+  RAQ K+ Q++GK DETKDE F+E+V NF +Q+A  TRL  EL+ Y+  I  MQ A     E++ EVYE DW  R  +    ++ D  W     ++ +  L  L +YL  FPD+K +I+KR+RKLVDYD +RH
Sbjct:    7 GIFAKN---VQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARH 150
The following BLAST results are available for this feature:
BLAST of TCONS_00066704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMPH1.768e-3242.86Amphiphysin OS=Homo sapiens GN=AMPH PE=1 SV=1[more]
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