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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066885 ID=TCONS_00066885|Name=TCONS_00066885|organism=Clytia hemisphaerica|type=transcript|length=2682bpRun BLAST on NCBI protein sequence of TCONS_00066885-protein >TCONS_00066885-protein ID=TCONS_00066885-protein|Name=TCONS_00066885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp ETLSRPALLITDAFNAVKQQALRRERDIQLMNQILTTVRKDGNVLLACDTRun BLAST on NCBI transcript from alignment at scaffold_462:512471..555128+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066885 ID=TCONS_00066885|Name=TCONS_00066885|organism=Clytia hemisphaerica|type=transcript|length=42658bp|location=Sequence derived from alignment at scaffold_462:512471..555128+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:512471..555128+ >TCONS_00066885 ID=TCONS_00066885|Name=TCONS_00066885|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_462:512471..555128+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066885 vs. Swiss-Prot (Human)
Match: CPSF2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2) HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0 Identity = 307/606 (50.66%), Postives = 410/606 (67.66%), Query Frame = 3
Query: 3 ETLSRPALLITDAFNAVKQQALRRERDIQLMNQILTTVRKDGNVLLACDTAGRILELTQLLDQLWRSQDSGLSVYSLVVMNNVVYNTVEFAKSQVEWMSDKMIKSFEATRTNPFSFKHIVQCHSIKEVEDVPSPKVVLASTADLNSGFSREIFISWAPDPKNTVIFTYSTAPGSLARQLIDNPDTKSIEIEVNKKVKLEGAELAEFLENEKEKARLTRLTRKSLTSETGDNVFKQXXXXXXXXXNALDLKSKYDLMLTDEKLRSKSSFFKQA-KIYPMFPYKEDRLKWDDYGEVIRPEDYMITETMMLDQPEVPEENDEMKLQQTXXXXXXXXXXXXXXXPPTKCISQTIQLDIRCTLAYIDFEGRSDGESVKRILSLVKPRQLILVHATEQATRTLADHCRNSNNMTISNIYTPVVNETVDATRESHIYQVKLKDALVSSLKFSTAQDIELAWVDGQL----------VMEERGE-KFDKMETDFQ-----------------------------KKEVVPVLEQMPQELVPGHSSVFIGEPRLSDFKQVLTRNGIQAEFAGGALICNNVVAVKRNETGKITLEGGLCPEYYQIRELLYEQYAIV 1697
E LSRP+LLITD+FNA Q R++RD QL+ +L T+R DGNVL+A DTAGR+LEL QLLDQ+WR++D+GL VYSL ++NNV YN VEF+KSQVEWMSDK+++ FE R NPF F+H+ CH + ++ VPSPKVVLAS DL GFSR++FI W DPKN++I TY T PG+LAR LIDNP K EIE+ K+VKLEG EL E+LE EK K + +S ++ D+ + + E + ++ +A K+K+DLM+ E R K SFFKQA K YPMFP E+R+KWD+YGE+I+PED+++ PE+ +E ++ +E ++ + PTKCIS T ++I+ + YID+EGRSDG+S+K+I++ +KPRQLI+VH +A++ LA+ CR I +Y P ++ETVDAT E+HIYQV+LKD+LVSSL+F A+D ELAW+DG L V+ E GE K D +++ Q + E++P LE +P VPGH SVF+ EPRLSDFKQVL R GIQAEF GG L+CNN VAV+R ETG+I LEG LC ++Y+IR+LLYEQYAIV
Sbjct: 190 EMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADI-DSSDESDIEEDIDQPSA--HKTKHDLMMKGEGSR-KGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLV--------PELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI-KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782 The following BLAST results are available for this feature:
BLAST of TCONS_00066885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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