TCONS_00066971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066971
Unique NameTCONS_00066971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066971 ID=TCONS_00066971|Name=TCONS_00066971|organism=Clytia hemisphaerica|type=transcript|length=1879bp
aaaaaaaagagtCGGGAATTTCACCTAGTATACATAGAAATGTCAAAAAT
GAACCACCTTCATGTTAAACAGCCGATATTGATTCTATTATTGTTATTTG
TTGGATACAACGATGCTCAAAATGAGCCATTCACCATCACAAGACAACGG
CATGGTATAAGTGACAAGCTAACATTGATTCCCGATATTTCACGACCCAA
TCTGgttaaaaatgaatttgaaaatttagggATGAACAGACAATGCCTCA
CTAATGGTGTAGCACGAACGATAGCCTCGCCCGTTGGAGGAGCATCGAAA
TTGAATTGTTATACTGGTCAAGAATATCAAAGTCAAGAAACGTGTTCGAA
TGGATTTCTAACAATTGCAGCTGAATCACAGACGTCCAGTCTTAGGTGTA
AAGTATCAAACATAAACGATATCTACATCTGGGATAGGAAGGAGCTTCtg
aaattcaatttcaaagatTTGGAAGATGAGCTGGAAGCCAAAGATAGTTA
TTTCGTTTTCAAGACGAGAAGCAAATGGGATGGATTACTGGTCCAAATAT
TATATCAATGTCAATCAACGACAGGAAACCTTGCAAAACAAGAATTGTGT
ACAGTGATGAAATTTACTGGCATAAGACACCATCCTCTACCAAACAAGAT
CGAAGAAATTTTATACGGCGATGACACACGACCATTCACGCCAACGCCTA
CAATACAAACAACAGGGAATAATACAACCATCGTTGTTGCAAAGTCTCAA
AAACTTAGCAATGGTATACCAACAGGCACAATTATAGGGATTTCTATAGC
AATTGTTATCGTTTTGGTGGCAGCTTTATTGATCTTAGCTCTCGCGTGCT
ATCGAAAAAGGAAAAAATCAAGGAGCGATAAACATAAGGATCCTGCGTAC
AACAGCTTCAAGCGGAACCGTAAAGAACAGAATCTTAATGGAGAAACATC
AACATTATACACagaacctaaaaattttctaCCAGAATACAAAGAGCTAG
AGCCAGGAGAGAtccaaaagaaaaatcaagGCACACTTAACAGTGACACC
TATCATTATAGCCGAGCTCGTGACACTACCCCTCGTCGAATAAATGTTTT
GAAAGGCAACCATGACAACCACTCAAATGATAGCACCTTAAGTGGTGGTT
ATAGTACGGTGAAGAATATCGATGTAAACCAACCAAAAAATCAAACGAAT
GAAGCAGTGATTGGCCATCGAATTCCTGGGAATGAATATGCAGTCGCACC
AATAGAACATGAAAACGTTACACAAGACAATAAGAGGAATCATAAACCAT
TGGACAGTGGTTACAGTTCAATACGTTTTGACCAGGAGAAAGGTAAAACA
GCGTTGGGAAAGGACTcgaagaaaagaacgttgaatTATTATAGTACACC
GATCAGTGATCGTCCAGAGACTCCACCAGAGATTGCAAAATTGTACACCA
AAGTCAATAAAAAGAGGTGATTCATCAACAAAAATTAGACTGTATGGTGC
GATCTATGAATTGCTGACTGTTTCCATGTTTATTACACGAATGAAAAGAT
ACATTTTAATCGTGTTTACAAATTATAACAAAATGAGACTGCATTGGACT
GTGTTCTAATTCAATTTACCATTGTTGAAATAAACTAAAAAGACCTGCAA
AACTCGACTTCTACCTTTGATATTAATAAAATGTCCACGATAGATGATTT
TATGGTACAGGattggacaaaatttcgcgaaatacacgttgtttataaga
acacaaggttCAATTTTAGTCAAAACCTAAGAACGATCCCAGTCTCAGAT
TTCAGAAAACTTATAAGAAAACTTGTAATGAATGATTGAATGTATGTAGG
CGACATATGTTTCGAAATTTCATGTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00066971-protein

>TCONS_00066971-protein ID=TCONS_00066971-protein|Name=TCONS_00066971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
KKKSREFHLVYIEMSKMNHLHVKQPILILLLLFVGYNDAQNEPFTITRQR
HGISDKLTLIPDISRPNLVKNEFENLGMNRQCLTNGVARTIASPVGGASK
LNCYTGQEYQSQETCSNGFLTIAAESQTSSLRCKVSNINDIYIWDRKELL
KFNFKDLEDELEAKDSYFVFKTRSKWDGLLVQILYQCQSTTGNLAKQELC
TVMKFTGIRHHPLPNKIEEILYGDDTRPFTPTPTIQTTGNNTTIVVAKSQ
KLSNGIPTGTIIGISIAIVIVLVAALLILALACYRKRKKSRSDKHKDPAY
NSFKRNRKEQNLNGETSTLYTEPKNFLPEYKELEPGEIQKKNQGTLNSDT
YHYSRARDTTPRRINVLKGNHDNHSNDSTLSGGYSTVKNIDVNQPKNQTN
EAVIGHRIPGNEYAVAPIEHENVTQDNKRNHKPLDSGYSSIRFDQEKGKT
ALGKDSKKRTLNYYSTPISDRPETPPEIAKLYTKVNKKR
Run BLAST on NCBI

transcript from alignment at scaffold_462:250381..254840-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066971 ID=TCONS_00066971|Name=TCONS_00066971|organism=Clytia hemisphaerica|type=transcript|length=4460bp|location=Sequence derived from alignment at scaffold_462:250381..254840- (Clytia hemisphaerica)
AAAAAAAAGAGTCGGGAATTTCACCTAGTATACATAGAAATGTCAAAAAT
GAACCACCTTCATGTTAAACAGCCGATATTGATTCTATTATTGTTATTTG
TTGGATACAACGATGCTCAAAATGAGCCATTCACCATCACAAGACAACGG
CATGGTATAAGTGACAAGCTAACATTGATTCCCGATATTTCACGACCCAA
TCTGGTTAAAAATGAATTTGAAAATTTAGGGATGAACAGACAATGCCTCA
CTAATGGTGTAGCACGAACGATAGCCTCGCCCGTTGGAGGAGCATCGAAA
TTGAATTGTTATACTGGTCAAGAATATCAAAGTCAAGGTATGATACAGCC
TGGACNCATCATTATGTTAAACGGTCGATATTGACTCTATTATTGTTATT
TGTTGGATACAACGATGCTCAAAAAGAGCCATTCACCATCACAAGACAAC
GGCATGGTATAAGTGACAAGCTAACATTGATTCCCGATATTTCACGACCC
AATTTGGTTAAGAATGAATTTGAAAATTTAGGGATGAACAGGCAATGCCT
CACTAATGGTGTAGCACGAACGATAGCCTCGTCCGTTGGAGGAGCATCTA
AATTGAATTGTTATACTGGTCAAGAATATCAAAGTCAAGGTATGATATAG
CCTGGAGATCCATGCTATGATTTCTTATTTTATATACTGATGGCCAAATA
TATAGCACGGTTAGGGTTGAGAGTTTGAATTTCCCAGATCCTAATAACGG
TTGAAAACACAGCCAATCAAATTCTACTATTCTTTCACTGGTCACATTTT
CTTAGAGAAAACGCAAGTTCCCACTGTCAATTATTTGAGGCAGAAATCTG
CCTCACAGCTCATACCGGTCCTGTATATATCAGATTATAAAAATACAGGA
CAGGTCTCCTGTCTAGGTATGATACTGAATTTTCTTATCGATTTCCATTG
AACTGACTGATTCGAATTTTCGAAACGATATCACTTTACTCTTGGGGAGA
ATGACTCCTTCTACAGGGATTGGAGTATGTCAGATTGTTTCTTTGGATAA
GTTGACAGGATTTATAAAACCAAGACTCTTACACTCTCCTATATCATTTG
TCCCATGACAAAAGTCCAAGGATCTATAACTACTTGACTATAATAACGCA
AAAGAAAGATACTGAAGGTAAATAATGCGACCAATAATATCAATAAACGA
AGTATTACTTTTTTGATTTATAGAAACGTGTTCGAATGGATTTCTAACAA
TTGCAGCTGAATCACAGACGTCCAGTCTTAGGTGTAAAGTATCAAACATA
AACGATATCTACATCTGGGATAGGAAGGAGCTTCTGAAATTCAATTTCAA
AGATTTGGAAGATGAGCTGGAAGCCAAAGATAGTTATTTCGTAAGTAAAA
TTTATGACATGAACCAGAGAATATTTTAAAATCTTTGTTAGCAGTGTTTT
GTTTGACAGGTGTCTGCGCCTTTTTTTAATAAGAACATACTATGAACTTG
TTATGAACAAGTTAAGAACAAGTTAAGAACGTTTTAAGGCTTGGTGGACT
CAAACGCCCAATTTCTTAGAAAAATTGGCAAAAACACTCACAAAATGGTG
AAATTAAGAACATTTTTAGGCTTGAAACTCAAAAAGTTAAGACCATCCGA
AGGCTTCAAAAATTGTGGATGTTCTTATAAAAAAACGTGTACTTCTGTGC
AGTCGAGGTCGTGTTTTCATTCATTTTATCGATTGCGTCCAGTCTCTTCT
GAGTGTCTTTCTCAGCTTGTTTGAGTACACCAGATATCGTTAGTCTTATG
CTCGCGAGATGCAACCGAACCACGGTGTATCGGCAAGAGCTTTGATCACC
GTATCTCATTAGAGTAGGTGACTATACTCTATACTACCTCATCGACGGGA
TAATTCCCTCCCTTTTTTAGCACGCATTATGTTGAACTGACGTAAAGTGT
GATTTAATATTTCTGGTTTAGGTTTTCAAGACGAGAAGCAAATGGGATGG
ATTACTGGTCCAAATATTATATCAATGTCAATCAACGACAGGAAACCTTG
CAAAACAAGAATTGTGTACAGTGATGAAATTTACTGGCATAAGACACCGT
AAGATTTCCAATTAGTTAATACATGAAGTTTTAAATGACTTGTCATTCGT
CATAACTTTAATCATCATAGTGATGACATTGAGTTTGTTAAGCAATCTCC
AGATCCCATGGTTGAACGTTTACCATCGATTTTTATTTCTGAAAAACTAA
ACCGCTGCTGCACCGCATCCCCTTGAATACTTTAGTCAGAAACAGACAAC
GTTTAGAATTCTGTGAAGCTGCTATTTAACTCTCTATTTAGAGATAATTC
TTAAAAATTTTGATATGAAAACAATGTTGCGCATTAATCTTTCCAGACAA
AATGAATAGCCCAAAAACAGTACAATCACCCGGCCGTGCTGAGAATTTTT
TTACAAGTAAAGACCGAGATTGCGTTTCAAAAAACAACCCGGGTAAAATC
TTTATCTCCGGGAATGTGTAGAAACTGGTATTTTATACTTTCAGATCCTC
TACCAAACAAGATCGAAGAAATTTTATACGGCGATGACACACGACCATTC
ACGCCAACGCCTACAATACAAACAACAGGGAATAATACAACCATCGTTGT
TGCAAAGTCTCAAAAACTTAGCAATGGTATACCAACAGGCACAATTATAG
GGATTTCTATAGCAATTGTTATCGTTTTGGTGGCAGCTTTATTGATCTTA
GCTCTCGCGTGCTATCGAAAAAGGTAATAAAAAACATTATAGGTAACTTC
AAAAAAGTATCCAGTGCTTCATAATATAAATTGTACAATATAAGAACAAT
TTTATGAGAACAAGGCTCGATTATGGGTATTCCGGGTAAAACTAATGATA
AATTATAAGAGCAATCCAGAATACAATACAATCAAGAGAATTCAGATGGC
AAAGAAAATGCTGATAAGCATATTCTAAGTCAATAAGTGAACATCTTAAG
AACATTTAAATGAGAACAACTAAGAACATTTACTCTTTTTCTCTAGGAAA
AAATCAAGGAGCGATAAACATAAGGTAAGATTTTAAATGACATAGAGTTG
ATTGTTTCAATAACATGCACATGTATTTTACGAATTTAGAAACAAAACTC
TTTACTTTAAGTTCTTTTATCATATTTTGTGTATCATCTTGTCCAGTTTA
ATTCTATTAAATTTGGTTCTCTCGAAAAGCCTAGTGATTTGCCCAGCTCG
AGACCGAGCTTCATCATCAGTACTTTCGCGTTAGGGGCCAGATTTTCCAA
AAACTACCTTCAGAAGACATCAGAATGTACATGAATCAAAAAGGTGAATA
GTTGAATCCTAGACCGATATTTTGAATCAACAATAGCTTAATAAAGGAAA
CGTCTTCAACTTTAAATGTGGTTGGCAATCACTTATATTAAGGTAAGCTG
TTATTCATCATCGTTCTAGGATCCTGCGTACAACAGCTTCAAGCGGAACC
GTAAAGAACAGAATCTTAATGGAGAAACATCAACATTATACACAGAACCT
AAAAATTTTCTACCAGAATACAAAGAGCTAGAGCCAGGAGAGATCCAAAA
GAAAAATCAAGGCACACTTAACAGTGACACCTATCATTATAGCCGAGCTC
GTGACACTACCCCTCGTCGAATAAATGTTTTGAAAGGCAACCATGACAAC
CACTCAAATGATAGCACCTTAAGTGGTGGTTATAGTACGGTGAAGAATAT
CGATGTAAACCAACCAAAAAATCAAACGAATGAAGCAGTGATTGGCCATC
GAATTCCTGGGAATGAATATGCAGTCGCACCAATAGAACATGAAAACGTT
ACACAAGACAATAAGAGGAATCATAAACCATTGGACAGTGGTTACAGTTC
AATACGTTTTGACCAGGAGAAAGGTAAAACAGCGTTGGGAAAGGACTCGA
AGAAAAGAACGTTGAATTATTATAGTACACCGATCAGTGATCGTCCAGAG
ACTCCACCAGAGATTGCAAAATTGTACACCAAAGTCAATAAAAAGAGGTG
ATTCATCAACAAAAATTAGACTGTATGGTGCGATCTATGAATTGCTGACT
GTTTCCATGTTTATTACACGAATGAAAAGATACATTTTAATCGTGTTTAC
AAATTATAACAAAATGAGACTGCATTGGACTGTGTTCTAATTCAATTTAC
CATTGTTGAAATAAACTAAAAAGACCTGCAAAACTCGACTTCTACCTTTG
ATATTAATAAAATGTCCACGATAGATGATTTTATGGTACAGGATTGGACA
AAATTTCGCGAAATACACGTTGTTTATAAGAACACAAGGTTCAATTTTAG
TCAAAACCTAAGAACGATCCCAGTCTCAGATTTCAGAAAACTTATAAGAA
AACTTGTAATGAATGATTGAATGTATGTAGGCGACATATGTTTCGAAATT
TCATGTTCAG

Coding sequence (CDS) from alignment at scaffold_462:250381..254840-

>TCONS_00066971 ID=TCONS_00066971|Name=TCONS_00066971|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_462:250381..254840- (Clytia hemisphaerica)
AAAAAAAAGAGTCGGGAATTTCACCTAGTATACATAGAAATGTCAAAAAT
GAACCACCTTCATGTTAAACAGCCGATATTGATTCTATTATTGTTATTTG
TTGGATACAACGATGCTCAAAATGAGCCATTCACCATCACAAGACAACGG
CATGGTATAAGTGACAAGCTAACATTGATTCCCGATATTTCACGACCCAA
TCTGGTTAAAAATGAATTTGAAAATTTAGGGATGAACAGACAATGCCTCA
CTAATGGTGTAGCACGAACGATAGCCTCGCCCGTTGGAGGAGCATCGAAA
TTGAATTGTTATACTGGTCAAGAATATCAAAGTCAAGAAACGTGTTCGAA
TGGATTTCTAACAATTGCAGCTGAATCACAGACGTCCAGTCTTAGGTGTA
AAGTATCAAACATAAACGATATCTACATCTGGGATAGGAAGGAGCTTCTG
AAATTCAATTTCAAAGATTTGGAAGATGAGCTGGAAGCCAAAGATAGTTA
TTTCGTTTTCAAGACGAGAAGCAAATGGGATGGATTACTGGTCCAAATAT
TATATCAATGTCAATCAACGACAGGAAACCTTGCAAAACAAGAATTGTGT
ACAGTGATGAAATTTACTGGCATAAGACACCATCCTCTACCAAACAAGAT
CGAAGAAATTTTATACGGCGATGACACACGACCATTCACGCCAACGCCTA
CAATACAAACAACAGGGAATAATACAACCATCGTTGTTGCAAAGTCTCAA
AAACTTAGCAATGGTATACCAACAGGCACAATTATAGGGATTTCTATAGC
AATTGTTATCGTTTTGGTGGCAGCTTTATTGATCTTAGCTCTCGCGTGCT
ATCGAAAAAGGAAAAAATCAAGGAGCGATAAACATAAGGATCCTGCGTAC
AACAGCTTCAAGCGGAACCGTAAAGAACAGAATCTTAATGGAGAAACATC
AACATTATACACAGAACCTAAAAATTTTCTACCAGAATACAAAGAGCTAG
AGCCAGGAGAGATCCAAAAGAAAAATCAAGGCACACTTAACAGTGACACC
TATCATTATAGCCGAGCTCGTGACACTACCCCTCGTCGAATAAATGTTTT
GAAAGGCAACCATGACAACCACTCAAATGATAGCACCTTAAGTGGTGGTT
ATAGTACGGTGAAGAATATCGATGTAAACCAACCAAAAAATCAAACGAAT
GAAGCAGTGATTGGCCATCGAATTCCTGGGAATGAATATGCAGTCGCACC
AATAGAACATGAAAACGTTACACAAGACAATAAGAGGAATCATAAACCAT
TGGACAGTGGTTACAGTTCAATACGTTTTGACCAGGAGAAAGGTAAAACA
GCGTTGGGAAAGGACTCGAAGAAAAGAACGTTGAATTATTATAGTACACC
GATCAGTGATCGTCCAGAGACTCCACCAGAGATTGCAAAATTGTACACCA
AAGTCAATAAAAAGAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041846XLOC_041846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066971-proteinTCONS_00066971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066971-exon-scaffold_462-1575043694:254504..254840TCONS_00066971-exon-scaffold_462-1575043694:254504..254840Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1575043694:253451..253617TCONS_00066971-exon-scaffold_462-1575043694:253451..253617Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1575043694:252743..252869TCONS_00066971-exon-scaffold_462-1575043694:252743..252869Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1575043694:252068..252296TCONS_00066971-exon-scaffold_462-1575043694:252068..252296Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1575043694:251767..251794TCONS_00066971-exon-scaffold_462-1575043694:251767..251794Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1575043694:250381..251371TCONS_00066971-exon-scaffold_462-1575043694:250381..251371Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1510915933:254504..254840TCONS_00066971-exon-scaffold_462-1510915933:254504..254840Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1510915933:253451..253617TCONS_00066971-exon-scaffold_462-1510915933:253451..253617Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1510915933:252743..252869TCONS_00066971-exon-scaffold_462-1510915933:252743..252869Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1510915933:252068..252296TCONS_00066971-exon-scaffold_462-1510915933:252068..252296Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1510915933:251767..251794TCONS_00066971-exon-scaffold_462-1510915933:251767..251794Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1510915933:250381..251371TCONS_00066971-exon-scaffold_462-1510915933:250381..251371Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1491911889:254504..254840TCONS_00066971-exon-scaffold_462-1491911889:254504..254840Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1491911889:253451..253617TCONS_00066971-exon-scaffold_462-1491911889:253451..253617Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1491911889:252743..252869TCONS_00066971-exon-scaffold_462-1491911889:252743..252869Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1491911889:252068..252296TCONS_00066971-exon-scaffold_462-1491911889:252068..252296Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1491911889:251767..251794TCONS_00066971-exon-scaffold_462-1491911889:251767..251794Clytia hemisphaericaexon
TCONS_00066971-exon-scaffold_462-1491911889:250381..251371TCONS_00066971-exon-scaffold_462-1491911889:250381..251371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:250381..254840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.164061	0	0.0819382	0.127849	0	0	0	0	3.32908	2.64869	0.298451	0.179813	0.197282	0	2.21933	3.3145	0.597977	0.408401	0	0.191141	0.775503	1.10345	0	0.994825	0.559207	0.457566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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