TCONS_00067088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067088
Unique NameTCONS_00067088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067088 ID=TCONS_00067088|Name=TCONS_00067088|organism=Clytia hemisphaerica|type=transcript|length=1462bp
TGTCGACCACCCGGCATATACAAACAAATGTACTTGCAAGAACTTTTCCA
ACGCTATGGCAATGTCAATGACACGCCAAAAGCACCAGAATTACCTGAAT
GGTGTTTCGATGAAGAAGATCAGAATGTCAGTGATGATGAGGGTGATGGC
GTTGAACGAGATGATGAGACGGGCGGGAATGAAGGGCGGCAACCTAAGAA
AATGAAACGAAGGCCGTATAATGAGAACGCGAAATTTTGCGAGAATATTC
CCTTGGAGACAGTGAGTGCCCGAGGTGCAGAGAGGATACAAGATATTTGT
GATGAAATGCTACAATGGAATAGAGGCAACTTTGGTGGAAGTCAACCTGT
GTCGATGGATAGAAAAAATGTAGATCTTATACAACAAAAGCCTTATAGAG
TAACATGGAAAGCCGACGGTACAAGGTACATGATGCTGATCGTAAAGGAA
GGAGAAGTTTATTTTCTTGATCGTGATAACAGTGTGTTTCTTTCGGATAA
ATTCTTTTTCCCGAGACGTAAACAACCAGAAGAACATATCTTTGATACAC
TGGTTGATGGAGAACTTGTTATGGACAAAGATGAAAAAGGAAAACTACAT
CCAAGATATTTAATATATGACATCATCAAATTCGAGGGACAAGATGTTGG
ACACACAGATCTGGATCGAAGATTGCTCTGCATCGATAAAGAAATCATCA
AGCCAAGAGCCATTGGTGTTCAATCAGGTCGTGTTGACAAATCCAGTGAG
CCGTTCGGTATTCGTAAGAAAGCTTTCCATGCTGTAGAAGGTGCCCAAAA
GTTAATGGACGAAATTATGCCGAAGATGCCGCATGAAACCGACGGTTTGA
TCTTCCAACCTCTTCTTGATCCGTACGTACCTGGTCAATGTCCATTTGTT
TTAAAGTGGAAACCTCACGAACTGAACTCTGTCGATTTTTTGTTAAATAT
CATCACCGTAAAAAGAGAAGGgtgTCTAGCGGAAAGAATGGGAGCGCTTT
TCGTTCAAGGGTACGATCAACCATTCTCGCAAATCAAGGTGACGGCAGAG
TTGAAACATTACGACAAACGAATCATCGAATGCACATGGGATAAAAATCA
ATGGAAATTCTTGAGGTTACGTGAAGATAAAAGTTTTCCCAACGCCTTTA
AAACCGCAACAAGTGTATGCGAAAGTATCAAGAAGCCTGTAACAAAAGAC
TTTCTCTTGGACTATATTAAACGATTCGGTTTTCGAAGGCCTTTAGGTCA
ACACTGAGATCCGAGAAATTGTAGTGGAGATGGCTTTTTATATACGATTA
AAATAGTGAGAGATGAATCGTTGGAAATATTTCTGGGAGTGGACCAGACT
ATGATCATCGTAAATCGTAACGGAAAGATACGTTTAGAACACTTCCATCA
GCTATAGTCTACGTTAAAGCATGGCTACACTCCAtcgggctcttccagaa
aatccCTTCATT
Run BLAST on NCBI

protein sequence of TCONS_00067088-protein

>TCONS_00067088-protein ID=TCONS_00067088-protein|Name=TCONS_00067088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
CRPPGIYKQMYLQELFQRYGNVNDTPKAPELPEWCFDEEDQNVSDDEGDG
VERDDETGGNEGRQPKKMKRRPYNENAKFCENIPLETVSARGAERIQDIC
DEMLQWNRGNFGGSQPVSMDRKNVDLIQQKPYRVTWKADGTRYMMLIVKE
GEVYFLDRDNSVFLSDKFFFPRRKQPEEHIFDTLVDGELVMDKDEKGKLH
PRYLIYDIIKFEGQDVGHTDLDRRLLCIDKEIIKPRAIGVQSGRVDKSSE
PFGIRKKAFHAVEGAQKLMDEIMPKMPHETDGLIFQPLLDPYVPGQCPFV
LKWKPHELNSVDFLLNIITVKREGCLAERMGALFVQGYDQPFSQIKVTAE
LKHYDKRIIECTWDKNQWKFLRLREDKSFPNAFKTATSVCESIKKPVTKD
FLLDYIKRFGFRRPLGQH
Run BLAST on NCBI

transcript from alignment at scaffold_463:304056..316222+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067088 ID=TCONS_00067088|Name=TCONS_00067088|organism=Clytia hemisphaerica|type=transcript|length=12167bp|location=Sequence derived from alignment at scaffold_463:304056..316222+ (Clytia hemisphaerica)
TGTCGACCACCCGGCATATACAAACAAATGTACTTGCAAGAACTTTTCCA
ACGCTATGGCAATGTCAATGACACGCCAAAAGCACCAGAATTACCTGAAT
GGTGTTTCGATGAAGAAGATCAGAATGTCAGTGATGATGAGGGTGATGGC
GTTGAACGAGATGATGAGACGGGCGGGAATGAAGGGCGGCAACCTAAGAA
AATGAAACGAAGGCCGTATAATGAGGTAatctttttgataaattattaTT
ATAGGAAAGAGTTTTTTTAACGGTTTATTGATGTAAGTTGTAGAATGTCA
CAAGGAATCTCTATTTCTAAAACGTTCCGTCTCCAGAAAAAAGTatgata
tgatttttttataatctttacTTTGATGTTTGCTGTTCATATcacaaata
caccttttcgaccgtagtcgcgcggccattttttgtccgctttatcccac
taaaaccgtcccagtccttttttgacgcatttttctattgtatatatgtg
cgaaaaaaggactgggacggttttagtgggataaagcggacaaaaaaatg
cccgcgcgactacggtcgaaaaggtgtatagcaTGGCTAAGCATGAGGCT
GTTTCATGAGACTGGAACTCTGTACGCTAGTACACCTTTATAAACTCTGG
ACTGATCTGTTTCTGCCATTTTAATCAGAGTTTTTTAAATCAGAGCCTGC
AAAGAagggatttaaaaaaaaataaagataaaataaCGTCGAACGGTGCT
ACATCATCACAAGtatacaaaaacaagcaaatctAGAGCTCTCGATGCAT
TTGCACCTCCGGGGTTGAGAAACTGTCTCTTGTGACGCTAATAAAGGCTA
TTTACAATTCTTACTGTGTGGGTGGTATGGAAAAGAAACTCATTGAATCA
GGTTAGAAGGTCCTTTGTTTGTATAACATCGGCTGTTTATGTAGGTAGAG
CTAGACTACTAATTAACATCAGTTTTActgatgagaaaaaacctacctag
aattttgtttacttttcgagTGTTTGAATTAGTATCACTATTCCAACTTC
CCGCACGGTTTTTGTTCTTCCTTTTGACTTTGAGACCCGGCTTTGAGGCA
GGATTGCTCCTACGTTTTGTGTTAAAGAAATGGTCTGGAAATCGAGACTA
CTGTTTATGTTACTAATACTTTTCTTCCAGAACGCGAAATTTTGCGAGAA
TATTCCCTTGGAGACAGTGAGTGCCCGAGGTGCAGAGAGGATACAAGATA
TTTGTGATGAAATGCTACAATGGAATAGGTGAGAGGTTTTTGATTATTTC
ATCTTGCCTAGTGATATTTTATATTCAGAGATATACCTACCAAAATGTAT
TGTTTTTTGCCTTTGTTGACATTTcagatttttggacctaccccggtgga
ggtcctataaattaacctgtgtttgttcgtccgtccgttcgtccgttcgt
tcgtctgttagcaacttttctcaggattgaatcataggaatcttttgatc
tttggtacaaaggtgcaaaatggtagtggccaaaatgtgacggagcccga
ttttcgaaaaaaaaaattttttgggccaatttgggccaaaaaacggctaa
aaaacgggttttttagactttgtgaaaaattggatcattaatttttctga
ttttttgtacgaaagtagggtaccgtcataggtaaaagatggttcaagca
gatttttgcaaaaaaattttgttggctcaaaaaacgcatgtttatctata
agaatcactattaataagcatacatcaaTGTTATTAGCCAAATTACTCAA
TTTTTTAATGAGATGGATTTTTTTTTTTTGCTCACGAAgttttgaatatg
aaagattacttcaagagcatgaaattttggtttctaaacgttttttttat
aagaaacaaacgactaattttgagagatcgtcactatttgtgttctgaaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtgtt
ctgaatgattgtttaacggtcatgctcacgtagatatcaattatatttgt
taaatgcataaccaggtaggtccataaaagtatcacttgttgaaCATAAC
TTTAGaatcaatgaaataaaattaaaaagtataaCACCCGGTATAACAGA
GATTTTCAGAAGTGAACAAGTATGATTGTCAAAAACACTTCGCCCTTAAT
TTCTTGCTGGTTAAAAGGATAATGAATATCTTATCAGCCCCTAaggattt
tgtcaatatttacaCGTTCTTTACGGCACTAATTAGTGTCCGCTGAAATT
AGGCAATGGTTGATCAAGtaccggcgtaaaaagggttGCTAAAGTAACTA
AAGAAATAGTCCAAAAATAATATTGCATAACCCTTTCAGTATGAAACTTA
CATTAATACTGTTATACGTTGAGACTCTCCTAAAATCTAATCGCAATGCT
TGAGGAGGGTTTAAAGCTTGGAGTAATCTAAATTAGAGTGGTTTTTTATG
ATAATTCCAAAGTATTTGTTCATTTTTAGAGGCAACTTTGGTGGAAGTCA
ACCTGTGTCGATGGATAGAAAAAATGTAGATCTTATACAACAAAAGCCTT
ATAGAGTAACATGGAAAGCCGACGGTACAAGGTGAACAAAGTATATTCTT
ATGCTCTGTATCGTAGTCCACCCCTGTTTCCCGTGCACACTTTTCCATAG
ATTAGACTGTGGGTACCAATTGACATTTAAGGGGCTGTATTTTCCACCCC
TTTACCATGTcatattacacccctgtctcctaGGATGCGATGCTGCTTTT
GATACATGATAGAAAACATGGAGGAGGTAAAGGTCTGACTGGTATTACTT
ACTTCAAATTATGGTACACTTGTTTATCACGAAACTaaaatcatggtcga
aatatattgagattttagtgtatttttagTGTATTGCTAATTTAGCActt
caactttcaactttcaactttcTTTCATGGAATAGACTTTAGAGGCTTCG
AGGTTAAATTCCAATCCTTATTgtagcaaatttgagcttttaaatcgtGA
GATCCTAAAGGTCCTCTCTACTTTCaaactgtagtttaacgcgcttaaaa
atcatttgttgtttttaaaatttcgcagggaaatcctctttgtgtcaaat
attttgtccttGATTGTAGAGCCTAATTTGGATATGCGATGCTTACTTCA
CTCTCTTTGAAGCGCGATAGATTAAGAgcggaatcttcaaccttttcaaa
aaagtgagtCCTTAAGATTTGCGCCGCTTTAAACTTTATGCCCAATGTGT
TTGTTGgttagagtcgatattttacgtggatagccaaGTAATCTAAAACT
TTTGGGCagtttttcgaatgtttttaccGGGTCCATGACTTATCTTAAAA
TTGGATAGAGCGGGGATTGATTCGAACTGCGAACCCCTGGTTTGGAGCAC
AGACGCCTTGACCGCTCGGCCATCGCTTTTTAAACCGAGCGTTCACTCTA
GCCTGAACTTATTTTCTGCTTTATAGGTACATGATGCTGATCGTAAAGGA
AGGAGAAGTTTATTTTCTTGATCGTGATAACAGTGTGTTTCTTTCGGATA
AATTCTTTTTCCCGAGACGTAAACAACCAGAAGAACATATCTTTGATACA
CTGGTTGATGGAGTGAGTCTATttgtatttctttgtttttcgcaTGGGCC
ACTGGGATGCTTTTAGGGTCACCCAGACTGGAGTCGTCTAGCATGCGTGT
TATGTAGTATAATATATTATGCGAAAACATAATGTGAAATCTGTTACGAG
ATAAtattcgtttttttataaactgTGTAATAATGTCCAGCAGGGTCACC
GACTTTGAGAATGAAAGGTGCGAAAATGAAAGGAATCTTGTAGCGAAGAA
GATCGATTATGGTGTTAGTCTTTTTCCGTCTTTTAGAGCTTATGATTCCT
TCTTCGTTTAACTGTTTGATTTTGTTATGACCGACGGTCATCCTCAGTGA
TAACtgttatcggcgatccaaaaaatatctgcaatcatttgattggttaa
aagagtaatcttgtattttacatgtacaaaatataaattgacgaaaagat
gttgttgcattgtagcggtagcagcaatctaacgtcccTTTTCTACAAAA
GTGCtctgcgcttttttccaacacaaaaattgcattttttgggtcaccga
taaactagttatcagacattttctcgtacaatatggaaataatttcaact
gtccgataactattaagTAACTGATAACAAAAATACATGTTCCGCCTTTT
CGATAAGTTTACTACTGCGGTTTAACagctttttcagtttttgccAAAGT
TACAAGTATGGAAGTAAGCGTCCATATCTGTAAAGGCGAGCCCTTACGCA
GATCTAAAGTTTGCTTCCATAGTTACGTAACTtagtcaattttaaaaact
ctCTTTTTCAAGTGCACATATTATTTTTAACACGGTCCGTAAGCATAAGT
TTTTATTTGTTGTTTTCAGGAACTTGTTATGGACAAAGATGAAAAAGGAA
AACTACATCCAAGATATTTAATATATGACATCATCAAATTCGAGGTATCA
GTCAGTCAACTTTACTTTCTGCTGTAAGATTTGGCGGTATTCATTAAGTA
ATCTCTTTTTTCATTATGAACAGCTCTTGATCACCTATACGACTGCTCTC
TAACTACTGGACTGGATCAGAGGTTTCCCATATAAAAAGAAGCGTGTCCA
ATTTTAGAGCTGACTAGTCCgtcatcttgttttcaattctggtcgtcggc
ataaaattcaacaaatttttgaaattaaaacgttcgaaagCCTAAGATAA
ATTAGAAAACAACATGTTGGAATAGTCTCAACTTCAAAACGGACACACCT
ACATGAGAAACCTTGAGCAGTTAACCTATTTTGTATGTAAAGGAATTTGA
TATTATATGTGGCTTATACGAATATAATTGTGCAGAGAAGAAAACTGTTT
AGTTGATCAACACTTTGAACTTTGTAATTCAGGGACAAGATGTTGGACAC
ACAGATCTGGATCGAAGATTGCTCTGCATCGATAAAGAAATCATCAAGCC
AAGAGCCATTGGTGTATGATTTTTCATTTAACTATTAAATtacacacttt
ttataagaacattcgaaatttttaaagcctttggatgtctcaactttttg
agttttgaaatgttcttaaaatgttctaatcttcaccattttgtgcgtat
ttttgtccattttcttaagaaattggccgttttagagtccgcgaaacctt
aaaatattcctaacttattcttgatatttcagccatcgaagccttatgtt
cttacatagtttgctcttataaaaaacgtctaTGAAAGGTCGTTTACCCA
TTTTCGAATGCCGAAATGCCGTAACTTTAGATCTTGAAGTAATTAGTTTT
AGGATAAATACCCAAATTAAGAACACTCCTGTCTCAACCAAGTGAAATAA
TATTATATTTCATTCGGAATTATGTTCATTCGGTAGTGACTGGGTAGCTC
AGCCGGTAGaacattcgccttacaatccaagggttgtgggttcgatcccg
gGTCATCGCCAATTCAGCGAATGGATAGCTAGACTGGGTAATCTgttcta
ggcggtaagttactgggagtcTAGAGTAGTTGTgacgctccacctcagca
ttcaacttcccaggtctagcgcaaatagaaaaggcgATAGACTTTCTCAC
TCCTAGCTCCACCAACAGCCAcaagatgaatatacttactttttACTCTA
CGGTGTTTTTAGGTTCAATCAGGTCGTGTTGACAAATCCAGTGAGCCGTT
CGGTATTCGTAAGAAAGCTTTCCATGCTGTAGAAGGTGCCCAAAAGGTTA
GAGTTCAGTGTTTTGTTTCTGTGATGCTTGAGAAAAATTTACACTAAGAT
TTTGTCATTTAACGTCGAAATTTGTCTAATGTGGTAAGGATACGTCCAAA
TCCAAGAATAAAACCTGTTAGACAattaagaagaaattttggcgaattta
aCCGAAATTCGTCAAGTCAAATTAAATTAACGCCAAAATTAATCTTTTCG
ACCACCCGCCAAATTCGAATAATTTTATTCAACCctcaaatttgtgctat
ttcgGGCCTTCAAAAAAGGTTTTATTGGCTTTTCGCCAAAACATCCTAAT
taaccaaattaaattccctgtGAAAAAACGTCcattctcgccaaaatttc
tttctatgCTGAGCACGTCATGTTCGATTACATTTTGTATTAAATTTTCT
ATATCTTTAATTTCAGTTAATGGACGAAATTATGCCGAAGATGCCGCATG
AAACCGACGGTTTGATCTTCCAACCTCTTCTTGATGTACGTAGCCTCTTT
TCCATACAAACAGACTAATTTCTTAAGATTTAGGTTTTCTCGAAATACCT
TTACGGCAGTTTAACAATGATCTTTCTTACCCGAAATTTAGATTACCAGT
TTGCATCTTTTATagtacctttttttataagaaagtgtCTTCCCCTATAT
CAAGATCGCATtgtgcttagcattctattgttcttagaCAATAGAGCTAT
TGTTTCGGTACCGAAAtttgagcctgcatatgcttacaAACGTTatgttt
atagaaaaaaaaacatgtaacacTTTTTAACCCATTTGGTTTTCTCAAAC
GGCTACCGAAGTTCCGTCGTGGAAATCAAAtactattttgattttttttg
atttcgcCTCCTGTcgtaatataatttttttaaacctaaaaaaataaCCG
ATCTTATTCATAAACTTCACTGTTAAAAGTTCTTTCGTCTCAGCGAAGTA
TATATATTTAAGTATAAAGAGGCTTGCTTTTCTGTCTCAAAGTTCTGCAT
CATTCACAAGTTTCAAAAACATGTGCTTATTTCCTGTGTAAAATCCATAA
ATTGCAGACAAAAAAACCTTTCTTTGACCACTTCAATTTGTctcaaagat
tttatttttacataagtcccgtttcatatcagacacaaatttcatatcag
gacagtgtctgcctattgttatatattAGGCTGATCTAAgcggaaaaatg
tttttcttttcctctttctgaccaatcttgctccacatctgtgtcaattc
aatgcgAATAACCTTGTAAATCAAAAATGATGGGTAagtaaacgatatca
ctcttatttaaaaacaaaacctttaaaactgtTATTTTCTACACTTTTCA
GCCGTACGTACCTGGTCAATGTCCATTTGTTTTAAAGTGGAAACCTCACG
AACTGAACTCTGTCGATTTTTTGTTAAATATCATCACCGTAAAAAGAGAA
GGGTAGGTCTCGATCACAGTTTTCTGTAAAgttcgaagggctagatggcg
cttttccaagcaagaaaaatgaatatcgcaaaaaatattgttgctattat
tttagaaaatccgtaaagcttctgattggtcaagcgctggaattctattg
taatgtccggtaggatttcctatcgagaaacggcacacttttcagccaaa
gcaagCCATCTAGCACTTCggactttataaatctgtggtcTCGATCGTTA
CTACGTTCTGTAATGCACTCTTCATCGCGATGTTGTCCTCTTGATGGACG
ACGCAATACTTTATAGTTCATGATAATATTATCTTACCTTATTTACGGCT
AACTCTTCAAAAGTCCGTTCAACAATCAAACGCCTTTCTAAGCATTATTG
GTTCATTTGGTTCGATTACATCATAATTTTGAGATTCGATATATtcagat
attgatttgattgttgagtgGATTTTTGGATAGTTTGCCGTAAgtagtac
tttaggcgtagaaactttcgcgagcagaaactttcgcgattttcgcgaat
ttttgcccttttcgcgaaagtaaatgtctttaaaaattctaggaagNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacgtcttga
ttcgcgaaagtttatgctcgcgaaaaatatttttccgttaaattcgcgaa
agtaaatgtcgtgaatttcgcgatttttcatcctcgcgaaagtttctgtt
cgcgaaagtttgtacgcctaaagtatacaGATAATAAAAGCCGGTTTCTG
TTCTTTGTAGAAACAACGCCTGGTacaaccaaaaaagaaaaagagaaagt
ttTATAAAGCATGataaatttaaaaagagacttgcTTCGCTAAATGATTA
CCGAAGACTCTCTTGAAGCTTAACCTGCTCAAAACTAATctacaaccctg
tctcacagccccgttggaacttttttcctcagtggggattaaaatttcta
tcgaaattccaaagggaatagaaattctattgttccaaggggATGGTTCT
GGAGtgcgatttttaaacattgaatttcgaatggggatgaaatgaaagtt
aatttcccagtggggttgatATCTAAAGGGCATTTTCCCACTGTGAACga
catttttgcaaaattttccagtggggcttgggtcccagcgggtctttgac
acaggggtgttaatcTGTCCTCGACACATAATTTCTTGTCCCCTTGATAA
CCAACAAGTTCTTATAATAATGACCCCTGCCACTCTAACTCTCACTCCAT
TACCCGAGACAACTTGAGCGTTGCAGGcttgaagaaagaaaataaaatat
cgCAAACCAGTTCAAACCATTTGTAAGATgttaaacaaatttttttcttt
tcttttttcaggtgTCTAGCGGAAAGAATGGGAGCGCTTTTCGTTCAAGG
GTACGATCAACCATTCTCGCAAATCAAGGTTAGTATTCAGTATTTAAAGC
CATTTAGCGTTTCCTGAATGTGATTGCATTTTTAAACTCGATTATGTTTG
CCGGATGACGGGTGGGTGCCgtgcaaattttgaaaattgaaaaatttcgc
taAATCGAGGAAAATTTGGAATTTTAGGAGCTTTATTCCGATTTTTCCCC
AAAGGTTAGATTTTTTTGGAGAGGGGTTAGACTTATTGATTTTTCCAATT
TACACTTTGCATTAGAGCAAGATCATTTGAGGACAGAGAAGTGACTGAAA
CGGTTTTGAATAACCCTGATCCACCGTTAATCAGGATCCAAAGAAAACCA
AAAAAGTAACCGTCTCCGTCACAGAAATCACAGCATACATAAACTCCCTT
TTACCATTTAGGTGACGGCAGAGTTGAAACATTACGACAAACGAATCATC
GAATGCACATGGGATAAAAATCAATGGAAATTCTTGAGGTTACGTGAAGA
TAAAAGTTTTCCCAACGCCTTTAAAACCGCAACAAGTCagtattttaaaa
tattcataaaGAATTCTGTAATTTTAGTCGTATTCTCATTTATATTTTCG
TCCACCTATTACATGAAAGTTTTACATGAGAGTTTTACATGAGAGTGCCA
AAACTTCATTTTCAGAGCTAGAGCCAGATTTTGGAAGGTGGAGGGCCAGG
GATATAGTAACTCGAGAGAGGCAATCATGGTTTGCACCAAGGGGAAAAAT
TTTGACACCCGCAAGTGCCTTAAAATGATCCTGTCTCAAACTGATTTTGG
CCAGAATTAAAGCTATTgcaagtactctcgggtacctaataagcgtctCC
CCGCTAggtaatttttcgaaaattttccacccaggacattcttattccaa
ctcccccccccccccctttttaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNacttattaatttttggaaaaatgttagc
ctttttttcaaattttccacccagaacatttttattcaaccaATCCCGCT
TATGGCCCTGATTTCCCTAGGAAAATTGGACTCTGCTTATTTCACTCAGC
CCTTCatttaagcacaaaagagtaacAAATGATAAACcaatcactttcac
tttcactttcttttcagGTGTATGCGAAAGTATCAAGAAGCCTGTAACAA
AAGACTTTCTCTTGGACTATATTAAACGATTCGGTTTTCGAAGGCCTTTA
GGTCAACACTGAGATCCGAGAAATTGTAGTGGAGATGGCTTTTTATATAC
GATTAAAATAGTGAGAGATGAATCGTTGGAAATATTTCTGGGAGTGGACC
AGACTATGATCATCGTAAATCGTAACGGAAAGATACGTTTAGAACACTTC
CATCAGCTATAGTCTACGTTAAAGCATGGCTACACTCCAtcgggctcttc
cagaaaatccCTTCATT

Coding sequence (CDS) from alignment at scaffold_463:304056..316222+

>TCONS_00067088 ID=TCONS_00067088|Name=TCONS_00067088|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_463:304056..316222+ (Clytia hemisphaerica)
TGTCGACCACCCGGCATATACAAACAAATGTACTTGCAAGAACTTTTCCA
ACGCTATGGCAATGTCAATGACACGCCAAAAGCACCAGAATTACCTGAAT
GGTGTTTCGATGAAGAAGATCAGAATGTCAGTGATGATGAGGGTGATGGC
GTTGAACGAGATGATGAGACGGGCGGGAATGAAGGGCGGCAACCTAAGAA
AATGAAACGAAGGCCGTATAATGAGAACGCGAAATTTTGCGAGAATATTC
CCTTGGAGACAGTGAGTGCCCGAGGTGCAGAGAGGATACAAGATATTTGT
GATGAAATGCTACAATGGAATAGAGGCAACTTTGGTGGAAGTCAACCTGT
GTCGATGGATAGAAAAAATGTAGATCTTATACAACAAAAGCCTTATAGAG
TAACATGGAAAGCCGACGGTACAAGGTACATGATGCTGATCGTAAAGGAA
GGAGAAGTTTATTTTCTTGATCGTGATAACAGTGTGTTTCTTTCGGATAA
ATTCTTTTTCCCGAGACGTAAACAACCAGAAGAACATATCTTTGATACAC
TGGTTGATGGAGAACTTGTTATGGACAAAGATGAAAAAGGAAAACTACAT
CCAAGATATTTAATATATGACATCATCAAATTCGAGGGACAAGATGTTGG
ACACACAGATCTGGATCGAAGATTGCTCTGCATCGATAAAGAAATCATCA
AGCCAAGAGCCATTGGTGTTCAATCAGGTCGTGTTGACAAATCCAGTGAG
CCGTTCGGTATTCGTAAGAAAGCTTTCCATGCTGTAGAAGGTGCCCAAAA
GTTAATGGACGAAATTATGCCGAAGATGCCGCATGAAACCGACGGTTTGA
TCTTCCAACCTCTTCTTGATCCGTACGTACCTGGTCAATGTCCATTTGTT
TTAAAGTGGAAACCTCACGAACTGAACTCTGTCGATTTTTTGTTAAATAT
CATCACCGTAAAAAGAGAAGGgtgTCTAGCGGAAAGAATGGGAGCGCTTT
TCGTTCAAGGGTACGATCAACCATTCTCGCAAATCAAGGTGACGGCAGAG
TTGAAACATTACGACAAACGAATCATCGAATGCACATGGGATAAAAATCA
ATGGAAATTCTTGAGGTTACGTGAAGATAAAAGTTTTCCCAACGCCTTTA
AAACCGCAACAAGTGTATGCGAAAGTATCAAGAAGCCTGTAACAAAAGAC
TTTCTCTTGGACTATATTAAACGATTCGGTTTTCGAAGGCCTTTAGGTCA
ACACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041920XLOC_041920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067088-exon-scaffold_463-1491911889:304056..304280TCONS_00067088-exon-scaffold_463-1491911889:304056..304280Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:304056..304280TCONS_00067088-exon-scaffold_463-1510915933:304056..304280Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:304056..304280TCONS_00067088-exon-scaffold_463-1575043694:304056..304280Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:305236..305333TCONS_00067088-exon-scaffold_463-1491911889:305236..305333Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:305236..305333TCONS_00067088-exon-scaffold_463-1510915933:305236..305333Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:305236..305333TCONS_00067088-exon-scaffold_463-1575043694:305236..305333Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:306635..306736TCONS_00067088-exon-scaffold_463-1491911889:306635..306736Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:306635..306736TCONS_00067088-exon-scaffold_463-1510915933:306635..306736Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:306635..306736TCONS_00067088-exon-scaffold_463-1575043694:306635..306736Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:307632..307767TCONS_00067088-exon-scaffold_463-1491911889:307632..307767Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:307632..307767TCONS_00067088-exon-scaffold_463-1510915933:307632..307767Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:307632..307767TCONS_00067088-exon-scaffold_463-1575043694:307632..307767Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:308625..308699TCONS_00067088-exon-scaffold_463-1491911889:308625..308699Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:308625..308699TCONS_00067088-exon-scaffold_463-1510915933:308625..308699Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:308625..308699TCONS_00067088-exon-scaffold_463-1575043694:308625..308699Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:309138..309218TCONS_00067088-exon-scaffold_463-1491911889:309138..309218Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:309138..309218TCONS_00067088-exon-scaffold_463-1510915933:309138..309218Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:309138..309218TCONS_00067088-exon-scaffold_463-1575043694:309138..309218Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:309918..310001TCONS_00067088-exon-scaffold_463-1491911889:309918..310001Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:309918..310001TCONS_00067088-exon-scaffold_463-1510915933:309918..310001Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:309918..310001TCONS_00067088-exon-scaffold_463-1575043694:309918..310001Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:310422..310490TCONS_00067088-exon-scaffold_463-1491911889:310422..310490Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:310422..310490TCONS_00067088-exon-scaffold_463-1510915933:310422..310490Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:310422..310490TCONS_00067088-exon-scaffold_463-1575043694:310422..310490Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:311357..311457TCONS_00067088-exon-scaffold_463-1491911889:311357..311457Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:311357..311457TCONS_00067088-exon-scaffold_463-1510915933:311357..311457Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:311357..311457TCONS_00067088-exon-scaffold_463-1575043694:311357..311457Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:314017..314083TCONS_00067088-exon-scaffold_463-1491911889:314017..314083Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:314017..314083TCONS_00067088-exon-scaffold_463-1510915933:314017..314083Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:314017..314083TCONS_00067088-exon-scaffold_463-1575043694:314017..314083Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:314467..314590TCONS_00067088-exon-scaffold_463-1491911889:314467..314590Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:314467..314590TCONS_00067088-exon-scaffold_463-1510915933:314467..314590Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:314467..314590TCONS_00067088-exon-scaffold_463-1575043694:314467..314590Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1491911889:315923..316222TCONS_00067088-exon-scaffold_463-1491911889:315923..316222Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1510915933:315923..316222TCONS_00067088-exon-scaffold_463-1510915933:315923..316222Clytia hemisphaericaexon
TCONS_00067088-exon-scaffold_463-1575043694:315923..316222TCONS_00067088-exon-scaffold_463-1575043694:315923..316222Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067088-proteinTCONS_00067088-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:304056..316222 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.5599	6.43333	5.09735	4.76741	46.1649	33.0394	29.0127	27.7689	14.0771	18.4726	18.187	15.2554	13.7842	15.332	15.6919	17.3574	16.2816	19.4768	11.0462	12.2835	15.878	14.9645	17.1413	16.8235	27.3224	26.5446	10.3661	9.92514	12.0992	11.943
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001339mRNA_cap_enzyme
IPR013846mRNA_cap_enzyme_C
IPR017074mRNA_cap_enz_bifunc
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0004484mRNA guanylyltransferase activity
GO:0004651polynucleotide 5'-phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:00063707-methylguanosine mRNA capping
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006370 7-methylguanosine mRNA capping
cellular_component GO:0005634 nucleus
molecular_function GO:0004484 mRNA guanylyltransferase activity
molecular_function GO:0004651 polynucleotide 5'-phosphatase activity
Blast
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BLAST of TCONS_00067088 vs. Swiss-Prot (Human)
Match: MCE1 (mRNA-capping enzyme OS=Homo sapiens GN=RNGTT PE=1 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 2.809e-115
Identity = 191/412 (46.36%), Postives = 265/412 (64.32%), Query Frame = 1 
Query:    4 RPPGIYKQMYLQELFQRYGNVNDTPKAPELPEWCFDEEDQNVSXXXXXXXXXXXXXXXNEGRQPKKMKRRPYNENAKFCENIPLETVSARGAE----RIQDICDEMLQWNRGNFGGSQPVSMDRKNVDLIQQKPYRVTWKADGTRYMMLIVKEGEVYFLDRDNSVFLSDKFFFPRRKQPEEHIFDTLVDGELVMDKDEKGKLHPRYLIYDIIKFEGQDVGHTDLDRRLLCIDKEIIKPRAIGVQSGRVDKSSEPFGIRKKAFHAVEGAQKLMDEIMPK-MPHETDGLIFQPLLDPYVPGQCPFVLKWKPHELNSVDFLLNIITVKREGCLAERMGALFVQGYDQPFSQIKVTAELKHYDKRIIECTWDKNQWKFLRLREDKSFPNAFKTATSVCESIKKPVTKDFLLDYIKR 1224
            RPPGIYK  YL+ELF+RYG++ + P  P LP+WCF++++    D++G        +     R+ +++K       A F E + ++ V+    +     +Q  C +   W    F G+QPVSMD++N+ L+  KPY+V+WKADGTRYMMLI    EV+ +DRDNSVF      FP RK    H+ +TL+DGE+++D+   G+  PRYLIYDIIKF  Q VG  D + RL CI++EII PR   +++G +DK+ EPF +R K F  +  ++KL++    K + HE DGLIFQP    Y PG+C  +LKWKP  LNSVDF L I  +  EG L + +G L+V GY++PF+QIKVT ELK YD +IIEC ++ N W F+R R DKSFPNA+ TA +VC SI  PVTK+ L ++I R
Sbjct:  160 RPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKL-----GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDR-VNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPT-GKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
The following BLAST results are available for this feature:
BLAST of TCONS_00067088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCE12.809e-11546.36mRNA-capping enzyme OS=Homo sapiens GN=RNGTT PE=1 ... [more]
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