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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067100 ID=TCONS_00067100|Name=TCONS_00067100|organism=Clytia hemisphaerica|type=transcript|length=4744bpRun BLAST on NCBI protein sequence of TCONS_00067100-protein >TCONS_00067100-protein ID=TCONS_00067100-protein|Name=TCONS_00067100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1214bp LSNLFHCFSLDFQMAKNNEDFLTFPTSKTFIAIQSADEIFLADLATEELRRun BLAST on NCBI transcript from alignment at scaffold_463:50983..78158- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067100 ID=TCONS_00067100|Name=TCONS_00067100|organism=Clytia hemisphaerica|type=transcript|length=27176bp|location=Sequence derived from alignment at scaffold_463:50983..78158- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_463:50983..78158- >TCONS_00067100 ID=TCONS_00067100|Name=TCONS_00067100|organism=Clytia hemisphaerica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_463:50983..78158- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067100 vs. Swiss-Prot (Human)
Match: INT2 (Integrator complex subunit 2 OS=Homo sapiens GN=INTS2 PE=1 SV=2) HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0 Identity = 430/1144 (37.59%), Postives = 667/1144 (58.30%), Query Frame = 2
Query: 65 LTFPTSKTFIAIQSADEIFLADLATEELRIVLPTLVRTIYHETKSSKNQQFKTFQDGIYKCIHHFSDVENLLSILKIDFKTVLDDVSNEQQLRRKANSNQYKE---SQ-HHALLLHYEGSSPSQRMRIVLSEILRISMQLKDGLESNYQLDDCELFEKSVYMVEISDMLCIAFSELPYLLSAPDISEVFLRLPHGCWLLCKLVVNNPDCFDVVCSSILAHAKPSGEATADMETLTRMKTLKLLCEMNPQYRKILRAECVSSSKLAGLSIELTINSTQS----DSGLDLVSFFTGLLLASSSKTKEWLSDYIKHVQKDIKENQRENTLVLFKRQLVKEMKMVISTLNANTPQSTGDETMGEGGAVVARGDSNPTMQGISIMRLYCAFKTIAGFKFSQEESEYLIDLITCIPCDSNDVSIRFIVVGLCTLVACAFLVSTPEREQKVTHWLRQLIEKSSTYQQEG--SPSYGETLLLIAIHFHGHTLEPIIDLVASTLGIKL--RPASLTKLKLLFTQTIFPEKVIAEHALTVPVTKNLNGNLRTFLPVHCIHQLLKSRVFTKYSISVKEWLFKQILQCGQPVHPLMMGLLETYVLAIVKTMNISKTTKQQRMSALQPFPEEDILAVFDPHSTVECCDKM--------TSQILLMMFSLLYQNALLDNMRTLVNNAKRPQEYSTHLYSIIPIKQLLMEVRSNERSYGHIYPCLLRLLTTHYPSLCLVEDWIDEEEEAQIVSTNQNVPRVMVDDS--------LLELFEPALEYHDTQKVITKLSRLVMLQPTLLIPHQDLVIDLLPKMLEKDVPRKIQLLVTKLWMKLNVVIPRRLLHRTVNVLRYQPENIKYSWERTCETTDEEIQKDPLIVLRCDKRIFRSPPLFGILLRTLRGYLTASRGLLQHHILSNPLNGASRKAEKVLSKEKD-----RLELQSALVHAQESAALQILLEICLPSELEKK--------FHDYTSKST------------------LREIQSQVCCYLHQSFISDPTIAKLLHYQGYSADLLPMTTTGVPSIHICIDFVSELMNQPYLEKQLFAVQLISYLSLQYPIPKSFSMSRYVIQQMKDLLCALPVAKRNQFFVTALCSLQRICKAFPPIREEVVALLLQIGRIAIS 3319
L F + F A+Q D + LA L+ ELR++LP LVR + ++Q + + I + + V +++++L +DF + D S EQQLR K + SQ H L L +E S +R+R+VLSE+L I ++ + + ELFE VY+ E +D+LCI +ELP LL D++E L + +G W LC LV N PD F+ VC ++ + + E + + R L+ LC+MNP +R V L GL + LT++ T++ D DLV F +GLLL +++K + W +I++ Q+ +E + L +RQL+ E+ ++ T+ + D M +V + ++ +++RLYCA IAG K ++EE+E L+ L+T P + +RF+ + C L+A + LVSTPE+EQ + WL +I++ + ++ S S+GE LLL+A++FH + L IIDLV STLG+K+ +P+SL+++K +FTQ IF E+V+ HA+ VPVT NL+ N+ FLP+HCI+QLL+SR FTK+ +S+K+W+++Q+ + P+HP ++ L++ Y+ +I ++ +K + QP E++IL +F V D + T+Q+L++ + L Y+ ALL N +TL ++P+ YS+ L IPIK L+ + + ++ G ++ LLRLL T+YP LC+V+DWI EEE I T+ + R+++ ++ L E F A+ ++TQ V+ + L +L + LIP+ +++ + ++L VPR+I V KLWM LN V+PRRL TVN L QP +IK+ R + T ++ DPLIVLRCD+R+ R PPL I L L GYL AS+ L H+ + S+ L + D R EL++AL+ AQ+SAA+QILLEICLP+E EK + S T LRE+Q +CC LHQ +I+DP IAKL+H+QGY +LLP+T G+PS+HIC+DF+ EL+ QP LEKQ+FA+QL+S+L +QY +PKS S++R + M LL L AKR FF+ L SL C+AFPP+ E++++LL+QIG++ S
Sbjct: 15 LQFVSPFAFEAMQKVDVVCLASLSDPELRLLLPCLVRMALC-APADQSQSWAQDKKLILRLLSGVEAVNSIVALLSVDFHALEQDASKEQQLRHKLGGGSGESILVSQLQHGLTLEFEHSDSPRRLRLVLSELLAIMNKVSES-NGEFFFKSSELFESPVYLEEAADVLCILQAELPSLLPIVDVAEALLHVRNGAWFLCLLVANVPDSFNEVCRGLIKNGERQDEES--LGGRRRTDALRFLCKMNPSQALKVRGMVVEECHLPGLGVALTLDHTKNEACEDGVSDLVCFVSGLLLGTNAKVRTWFGTFIRNGQQRKRETS-SSVLWQMRRQLLLELMGILPTVRSTRIVEEADVDMEPNVSVYSGLKEEHVVKASALLRLYCALMGIAGLKPTEEEAEQLLQLMTSRP-PATPAGVRFVSLSFCMLLAFSTLVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEMLLLVAMYFHSNQLSAIIDLVCSTLGMKIVIKPSSLSRMKTIFTQEIFTEQVVTAHAVRVPVTSNLSANITGFLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETSTPLHPQLLPLIDVYINSI-----LTPASKSNPEATNQPVTEQEILNIFQ---GVIGGDNIRLNQRFSITAQLLVLYYILSYEEALLANTKTLAAMQRKPKSYSSSLMDQIPIKFLIRQAQGLQQELGGLHSALLRLLATNYPHLCIVDDWICEEE---ITGTDALLRRMLLTNNAKNHSPKQLQEAFS-AVPVNNTQ-VMQIIEHLTLLSASELIPYAEVLTSNMSQLLNSGVPRRILQTVNKLWMVLNTVMPRRLWVMTVNAL--QP-SIKFV--RQQKYTQNDLMIDPLIVLRCDQRVHRCPPLMDITLHMLNGYLLASKAYLSAHLKETEQDRPSQNNTIGLVGQTDAPEVTREELKNALLAAQDSAAVQILLEICLPTEEEKANGVNPDSLLRNVQSVITTSAPNKGMEEGEDNLLCNLREVQCLICCLLHQMYIADPNIAKLVHFQGYPCELLPLTVAGIPSMHICLDFIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLAVNVMGTLLTVLTQAKRYAFFMPTLPSLVSFCRAFPPLYEDIMSLLIQIGQVCAS 1134 The following BLAST results are available for this feature:
BLAST of TCONS_00067100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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