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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067144 ID=TCONS_00067144|Name=TCONS_00067144|organism=Clytia hemisphaerica|type=transcript|length=2908bp
TCTAAAGGTGTGATCCAATTAGCCTCTGGCCGTTACAAGTCAAAAACACA
TTGGTGGTTTGATAGTAAATTTTGACAAGATTATTTCGTTTCATTGGATT
GTCAAAGTGAGATCAGCAGATCACTATGGATACTTCGACGCCATTTATGA
TTGAAACATATCTGGAATCGTTCAGgaacaccAGTATGCTTGCTAAATCA
GCATCCACTACTAAGCTTTCAGCATGCTTCATTTGTGGTCAAGAAATCCC
TCTCTCGGAACTCACAACACACGAAAAAGCATGCTTAGACACCATCAAGG
CTAATGATACACAATACACGAGACAATCTGGGGACGACGGTTCATCAGAT
CACTCCTTCCCGACGGCTTATTCTAATCTCTCAACCCATTCTTCTTCGAG
TGGCGATTCTGCCGGTACCGAAAAGAAGTATTCGCAATGCTATATTTGTG
GAACGGATGTCCCAAGTTATTTAGCCTCTATTCACGAGAAGAATTGCAAA
AAGAGCTGGGAAACAGGGCTACTAAATTCGATTTGTACACCAGCTCGAAA
GAGTAAGTCAAAAACTGATGTTTCAACGCTTTCAAGAAGCTCAAGCCGTG
ATAACATTTTACAAAAGCAAAATGACTTTTCCTTATCAACGCCAAATCTC
ACGAAAGCCAAATCTACTACCAACTTACAGAATGCCAAAATGACGCCGAC
AAAAAGCGACAAACCACGTCATTTACGATCAAACGGACGTAAAAGTACGT
CACCTATGTCTCGGTCAACGACAAATTTATCGACGAAAACGACTTCTAAA
GATTCGTTACTCTCATCTACCGAAAACCTTTCGAAGTCATCTCAAGATGT
TCGGGATGTTACCGATGCACCGAAACGCCGGAACACCGGAGATCCGCAAT
ACGTCATTTGTCAAATCTGCGGAAAACTGTATAGTAAGCATTCGATCAGT
ATACATCAGAGGAGTTGCGAAAAAACGTATCAAAAGCAAAAGAGCGTGGG
TACAAATGTAGACTATAAAGTCAAAAGTCGTTCACTTGTTGATCTAACAA
AAACCAATAGCCGGCGAACACCAATCCCGACTTCAAAACCGAAATCGGAA
AGGAGACCTGCGTCGGCTAATCcgataaataaaatcaaaacgaACTCTTT
ATCTAGGAGTACGGGAAACTTAGCTCCAACTTCAACATATAGACGCCGAT
TATTAACATCCAATAAAAAGACAGTCGTAAATGGTGAAACAACAAATGAG
TCATCAATGGCAAGCCCAATAAGTAAAAGTGAAATTGACATATCAACTAC
GTCGCCCGGATTACGTAAATGTTATTTATGTCGTCAGTTATACGGTACAC
GCTCGTTACCCATTCACGAAAAACAGTGTCTCAAAAAATGGGAGCTAGCA
CAAGAAGAAGAGCACAAGCAACGGAAATCGAACGCGCGGGCGGCCAAACA
ACAAGACATACAAGTATCATCATTCGGACGAACAAAATTCGAAGAGGAAA
ATGGGTTAAATTCGAAAACTGAGTCGGATCAAGAAGAGGATTACGATTTA
GAATCAACCACTATTCAAAAGCCGATCATATCTCCATCAAAGATGTTTGG
TGTCCCCTCGCCATTAAAGAAAGGCTTCATTGGCCCCGATACTGATGACT
CGTTAGACGAGACCGATGGTAAGGCCAGTACCCTTGATACTGATAAGGAC
AATGGGAAAGTTTTAACGAACGGAGAATCAGGACCTGAAAGACGTAAATC
TGGGAGCGGACCTAAATTCGTTGTCTGTATTTATTGTTCAAAACAATTTG
GTCAACACTCAATCTCTATTCATGAGAAAAGTTGCCGAGAGAAAATGAAA
gtcgaaacaaaaacaaaagaaagaatggCCACacaatctaaaataaaaaa
taataaaaaactcaGCCAAAGTGTTGGTGATATGACACTTTCTGACGCTT
TTGATGTGACCACGAATGATATGTTACAATTGGTGAAATGTAATNTGACG
CTTTTGGTGTGACCACGAATGATATGTTACAATTGGTGAAATGTAATGAA
TGtttaaggaaatttttgaaatcagaCATCGAGAAACATAAAATACATTG
CCGTGTATCTGTACTTTAAAACTTACAGCGCGTCCGGAAGAAAAGAGGAC
AGAATTTATATAACGTGGAATCCTCAtaatttatataataatatcatGAC
TTTATTATTCAATTTCTTTCCCATCAAAACCTATTAAAACTATATTGGAA
ATTGAGTATAATGTTGCCCGTGTGCATTAGGTTTAGACATTCTAGGGCGA
AATTATTTTGCcgtatttttgacaaaatctaCTGGATACCAAACTTTCTT
ATTTCTGCTTTTCTAATTTTATAGGATCATTTCGAAATACTAGAAAGTTA
TTCTTTTGGttagaagtttttttcaataaataatAACCGGGCGAAGCAAT
TCGTTTTTCGCGTAGTCCATATTTTGTTGTACAGTTAGCTCCTGCTAGTT
TGGAATCtgatttgttcgaattaaaagataaattcgaattatagagagta
ttttacgAGGATTTCCCTTAAAGGGGaattatttgttcgaattatagaaa
gtttcgaattatggaagttcgaattagggagGGTCCACTCTATTTGTTTT
TTACCTGGACAGTATTTTGGTTGTGTTTGTTTTccaattttagggaaaat
ttgACACTCCTTGTTGTGAAAGGATAATATTGACATagattttgtttaca
aaaatcatTAAGAATTATTATTAGCAATTAATTGTTATTTTACTGTTTAT
TTATTGgtatttcattcaaattttacaaattggtAGATTATAGTTTCGTT
TTGTAATGTGTTTTTGGAAGAAAATAAACGATATCTTTCTctaaataaag
aacttttt Run BLAST on NCBI transcript from alignment at scaffold_464:197685..202512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067144 ID=TCONS_00067144|Name=TCONS_00067144|organism=Clytia hemisphaerica|type=transcript|length=4828bp|location=Sequence derived from alignment at scaffold_464:197685..202512+ (Clytia hemisphaerica)
TCTAAAGGTGTGATCCAATTAGCCTCTGGCCGTTACAAGTCAAAAACACA
TTGGTGGTTTGATAGTAAATTTTGACAAGATTATTTCGTTTCATTGGATT
GTCAAAGTGAGATCAGCAGATCACTATGGATACTTCGACGCCATTTATGA
TTGAAACATATCTGGAATCGTTCAGGTATATTGAAGATCTTAGTATGTAA
TTCTGAGCAGAAAGAATAAATAAACACCAGATGTTATCTCCATTGCAGAG
AatgtaaaggcgggaaaatacaTATGCAATAGTTTACAGCCGTAATGGCA
GTATACAAAAAAACGGCGGTAGAGTTTCAATGAAACGAGACTGAGAATGC
GAAAGACTGGCAAACTAtaccggctgtaaactcttttcggcaagaAAACT
TGATTGGGAATTTTCtccggctttgggcttttttcttagataaaaACACT
TTGTCCTAGGCTATAGCAAAGCCTAGTTAATTCGTAAGGATAATTTTGGA
AACATACCTTATTTAAACAgtatttctgaaaaatattttgaaagcttTCA
CAAAGAATTCACGAATTCCCAAAGGGTGAAATCAACAATGGTATTCTGGT
TTTCGAGATGAGCCCCTGGTTCAttataagttaagaaaattttcggtatt
tcggaatatTACCAGAATGTTAACTACAGTTTTCTGTTATCTTTTAATAT
CCAGTCTTGCTTGATTAATCCGGTATTGCTTGAATCCTATTGGTGCTGGT
AATCCAATATGTtgtgaatacacgttttttttataagaatatccaaaatt
tttgaagcctttcgatgttcttaactttttgagtttcaagacTGAAAATA
TCCTTTACATAtccttattttcaccattttgtgagtaatcTTCTCTACTT
CAttaagaaatttggtgttttagagcccacaaagccttaaaatgttctta
acttgttcttgttcttattttggctatcgaagccttatattacttatata
gtttgttcttataaaaatgtgtatgaAATTAATACTGGTCTCCCTGTGCA
CCCTCCCAACGCCCTCCCTTCTCCATACTTATAATATGCTAACAAATACA
AGAAATTATGTTATGAAGCTGAGATGACTTTTTTTTGGGGAAAAGCAATT
GATAAAGACAGTGAAATCAAatatttattcttttttataggaacaccAGT
ATGCTTGCTAAATCAGCATCCACTACTAAGCTTTCAGCATGCTTCATTTG
TGGTCAAGAAATCCCTCTCTCGGAACTCACAACACACGAAAAAGCATGCT
TAGACACCATCAAGGCTAATGATACACAATACACGAGACAATCTGGGGAC
GACGGTTCATCAGATCACTCCTTCCCGACGGCTTATTCTAATCTCTCAAC
CCATTCTTCTTCGAGTGGCGATTCTGCCGGTACCGAAAAGAAGTATTCGC
AATGCTATATTTGTGGAACGGATGTCCCAAGTTATTTAGCCTCTATTCAC
GAGAAGAATTGCAAAAAGAGCTGGGAAACAGGGCTACTAAATTCGATTTG
TACACCAGCTCGAAAGAGTAAGTCAAAAAGTAAGTGAAACTTCTACTCTA
CCTAAGTCGGAAAGTTTTCGAAACATttattggtccagcgcgcagcagaa
tggacctttaaaaagcaactgattgaaaagattttgtctttgtcggggcc
tgtgcgcgcaataaattaacaagtccaggNATCAAAAACTGTCAAAACTT
AGCAATataaagaaagtgtcaaagtgtcaaagaataaaAGCTCAGAGTAG
AGGATGGGAAGGAAACTTTTTTGCGTCTtttaaggaacccggtacgaacg
acattcggttattgccacgtcagctggaccttcacgccgctccggcttct
tgtttatttttgccccgctttaaatgaaaatcttataCAAAGAATTACGT
GTTATAATTCAAATCCTTCAATCATTTGTAAAAAGATCAGTTTTTCCGAT
GTATCGAAgtaacttttgaaaattctgaTGATCATCATTTGACGTGTTGA
AGTAGATCGGTATTCTTTCAGCTGCGGTCTGAGTCAATTTAGGAGCTCCA
CTTGTCACCGCTATTTGCCAGAGAGGCATACGAgcctttggtatgacccg
gccagCGGCGCACCGTAGCCAGATGTTCTACCTTTATGTTACAAATTGCT
AAGAAATAGATTGGcacagtctgttcctctaaagaacCCTGCATTGTAGC
ACGcgtgcgtaatttgtcgttctttaaaccaTATGTAGATAATTCCTGTG
ATAAACAAATAAGAAGATTTCGTAGGGGTTGACAAACCAACCGGGTCGGG
GTTGTGGAGGgcgaaatttgtcgtttttaTAAAATGtgttgttctttttg
tctacttttagtaaatgtaggattctttagataaacccacTCGGCATCAT
AAATTATATCATGTTCCATTCTCTTTGTTTTCAGCTGATGTTTCAACGCT
TTCAAGAAGCTCAAGCCGTGATAACATTTTACAAAAGCAAAATGACTTTT
CCTTATCAACGCCAAATCTCACGAAAGCCAAATCTACTACCAACTTACAG
AATGCCAAAATGACGCCGACAAAAAGCGACAAACCACGTCATTTACGATC
AAACGGACGTAAAAGTACGTCACCTATGTCTCGGTCAACGACAAATTTAT
CGACGAAAACGACTTCTAAAGATTCGTTACTCTCATCTACCGAAAACCTT
TCGAAGTCATCTCAAGATGTTCGGGATGTTACCGATGCACCGAAACGCCG
GAACACCGGAGATCCGCAATACGTCATTTGTCAAATCTGCGGAAAACTGT
ATAGTAAGCATTCGATCAGTATACATCAGAGGAGTTGCGAAAAAACGTAT
CAAAAGCAAAAGAGCGTGGGTACAAATGTAGACTATAAAGTCAAAAGTCG
TTCACTTGTTGATCTAACAAAAACCAATAGCCGGCGAACACCAATCCCGA
CTTCAAAACCGAAATCGGAAAGGAGACCTGCGTCGGCTAATCcgataaat
aaaatcaaaacgaACTCTTTATCTAGGAGTACGGGAAACTTAGCTCCAAC
TTCAACATATAGACGCCGATTATTAACATCCAATAAAAAGACAGTCGTAA
ATGGTGAAACAACAAATGAGTCATCAATGGCAAGCCCAATAAGTAAAAGT
GAAATTGACATATCAACTACGTCGCCCGGATTACGTAAATGTTATTTATG
TCGTCAGTTATACGGTACACGCTCGTTACCCATTCACGAAAAACAGTGTC
TCAAAAAATGGGAGCTAGCACAAGAAGAAGAGCACAAGCAACGGAAATCG
AACGCGCGGGCGGCCAAACAACAAGACATACAAGTATCATCATTCGGACG
AACAAAATTCGAAGAGGAAAATGGGTTAAATTCGAAAACTGAGTCGGATC
AAGAAGAGGATTACGATTTAGAATCAACCACTATTCAAAAGCCGATCATA
TCTCCATCAAAGATGTTTGGTGTCCCCTCGCCATTAAAGAAAGGCTTCAT
TGGCCCCGATACTGATGACTCGTTAGACGAGACCGATGGTAAGGCCAGTA
CCCTTGATACTGATAAGGACAATGGGAAAGTTTTAACGAACGGAGAATCA
GGACCTGAAAGACGTAAATCTGGGAGCGGACCTAAATTCGTTGTCTGTAT
TTATTGTTCAAAACAATTTGGTCAACACTCAATCTCTATTCATGAGAAAA
GTTGCCGAGAGAAAATGAAAgtcgaaacaaaaacaaaagaaagaatggCC
ACacaatctaaaataaaaaataataaaaaactcaGCCAAAGTGTTGGTGA
TATGACACTTTCTGACGCTTTTGATGTGACCACGAATGATATGTTACAAT
TGGTGAAATGTAATNTGACGCTTTTGGTGTGACCACGAATGATATGTTAC
AATTGGTGAAATGTAATGAATGtttaaggaaatttttgaaatcagaCATC
GAGAAACATAAAATACATTGCCGTGTATCTGTACTTTAAAACTTACAGCG
CGTCCGGAAGAAAAGAGGACAGAATTTATATAACGTGGAATCCTCAtaat
ttatataataatatcatGACTTTATTATTCAATTTCTTTCCCATCAAAAC
CTATTAAAACTATATTGGAAATTGAGTATAATGTTGCCCGTGTGCATTAG
GTTTAGACATTCTAGGGCGAAATTATTTTGCcgtatttttgacaaaatct
aCTGGATACCAAACTTTCTTATTTCTGCTTTTCTAATTTTATAGGATCAT
TTCGAAATACTAGAAAGTTATTCTTTTGGttagaagtttttttcaataaa
taatAACCGGGCGAAGCAATTCGTTTTTCGCGTAGTCCATATTTTGTTGT
ACAGTTAGCTCCTGCTAGTTTGGAATCtgatttgttcgaattaaaagata
aattcgaattatagagagtattttacgAGGATTTCCCTTAAAGGGGaatt
atttgttcgaattatagaaagtttcgaattatggaagttcgaattaggga
gGGTCCACTCTATTTGTTTTTTACCTGGACAGTATTTTGGTTGTGTTTGT
TTTccaattttagggaaaatttgACACTCCTTGTTGTGAAAGGATAATAT
TGACATagattttgtttacaaaaatcatTAAGAATTATTATTAGCAATTA
ATTGTTATTTTACTGTTTATTTATTGgtatttcattcaaattttacaaat
tggtAGATTATAGTTTCGTTTTGTAATGTGTTTTTGGAAGAAAATAAACG
ATATCTTTCTctaaataaagaacttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067144-exon-scaffold_464-1491911889:197685..197859 | TCONS_00067144-exon-scaffold_464-1491911889:197685..197859 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1510915933:197685..197859 | TCONS_00067144-exon-scaffold_464-1510915933:197685..197859 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1575043694:197685..197859 | TCONS_00067144-exon-scaffold_464-1575043694:197685..197859 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1491911889:198875..199263 | TCONS_00067144-exon-scaffold_464-1491911889:198875..199263 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1510915933:198875..199263 | TCONS_00067144-exon-scaffold_464-1510915933:198875..199263 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1575043694:198875..199263 | TCONS_00067144-exon-scaffold_464-1575043694:198875..199263 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1491911889:200169..202512 | TCONS_00067144-exon-scaffold_464-1491911889:200169..202512 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1510915933:200169..202512 | TCONS_00067144-exon-scaffold_464-1510915933:200169..202512 | Clytia hemisphaerica | exon |
| TCONS_00067144-exon-scaffold_464-1575043694:200169..202512 | TCONS_00067144-exon-scaffold_464-1575043694:200169..202512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:197685..202512 + |
Blast
The following BLAST results are available for this feature:
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