TCONS_00067325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067325
Unique NameTCONS_00067325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067325 ID=TCONS_00067325|Name=TCONS_00067325|organism=Clytia hemisphaerica|type=transcript|length=1527bp
tcTTAGATCACTAAGAAGAAGCGCTTGAAATCTCGCAAAGAGAGAAACAA
ATCAAGAAAGCAACGCCAGAAGCACAAAAATGCATCTACGCCATCGGCAA
ACATTAAGGAATCCACCCCAACAGACCCCTCCCCGTCGCAAGATCGCATT
AAAGTGAAACGTAAAACAAAACGCGTGAAGCCGGAGGGCGGAAGTAGTGG
GCAGATCGGGCGCATGGCGTACACATCACGTACTCATAAATCGGACTGTC
AAAAGTGTTTATACCATGACCATGCGGATTGTTTCGACAGAATCACAAAC
TCTTATGTTCAAGCGGGGCTTTTGGATAAAGAATCGTCGTGTCATGGTAA
CAACACACCACCGTGTGAGAAATGTAACCCCAGTTTTTATTTCTACGACA
CGGGTGACGATCCAGTATTACCACATCATTTATCCAGTTATTCTCTCTAC
GACATGCGTATGCCGAGTTACGCCAATACGGAAGTGAACCCTACGTTAGA
ATTAGCACGCCGTATTACAGCATTCAATTACCGTAACGGGAAAGTACCAC
AGCGCATGAGCAGAATGTTTGCTATATGGAGCAATTTGGATATGAAGAAA
GACGAACCTCCAAAACGAAATCTGTTGAATCAAGGTGACAATTTGGAATA
TTTCACAAACCGATTGAAGAAAGTTCATTCATCGTTTACACCCAACAAGA
AACCCATTAAAACGACCTTAAGTGagaaGAACCTGGTGGACCAGTTAGTG
TACCAACATTCTCAAGCCATGAACCGTCTCCATTCAACGCGAAACGTAAC
CAATCTATCTTCACAATCCACAAAGAATCATAAACTAGCCAGTCAAACGG
CAACGAAGAGAAATACAAAACATCTTCCGAAATTAGATACTTTATCACCA
ACAACTTCAAGTATTTCGCCAAAACGGATGGACAGTAGTTTACGTGGTGC
GCATGCACAATACATGGCATCGAGAACCGCAAGTCAAAAGTCTGGAAAAC
TCATAGGGTTGAAACCCCCTTCATTGGACGATTCTTCGTCTTACAAAGAG
CGAATTTCGCAAGAAGTATACAAACCGCCGACCGAGaagaGACTGTTATC
ACAAAAAGACATCCTGGGTCCGGCGCAATACGCTGATTTCGATGTTATCT
CCTCCGAGAGATGTAAAAGTGGACGGAGAAGTGCTCAAAGGGCGTCACCA
GATATGCGCGCCATAACGCCACAACAATACTTCATGTACCCTCAACACGA
AAGCCCATGAGCCTCTTCAGTATTGCTGTCCGTAAAAGCGAAGTATTTTT
TTGGAAGCTGGTATGTAACGTAAGTCTGGATCTCGTCAGGGTATGTAATT
TCTTAGAACATGAAAAGGGCCTGGGATCTAGCTAAGGTTCGACTTGCTAT
TAGTAAGTGTTTATGTGTAGGAAATCTGGACCCTCCTCCTTATGAAGTGA
TCTTTCATTACTTTCATCGATTCATCCTCCCATACGAAGATTATTTCGAA
AATACTTAGCAGGAACCAATTGAGCTT
Run BLAST on NCBI

protein sequence of TCONS_00067325-protein

>TCONS_00067325-protein ID=TCONS_00067325-protein|Name=TCONS_00067325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MAYTSRTHKSDCQKCLYHDHADCFDRITNSYVQAGLLDKESSCHGNNTPP
CEKCNPSFYFYDTGDDPVLPHHLSSYSLYDMRMPSYANTEVNPTLELARR
ITAFNYRNGKVPQRMSRMFAIWSNLDMKKDEPPKRNLLNQGDNLEYFTNR
LKKVHSSFTPNKKPIKTTLSEKNLVDQLVYQHSQAMNRLHSTRNVTNLSS
QSTKNHKLASQTATKRNTKHLPKLDTLSPTTSSISPKRMDSSLRGAHAQY
MASRTASQKSGKLIGLKPPSLDDSSSYKERISQEVYKPPTEKRLLSQKDI
LGPAQYADFDVISSERCKSGRRSAQRASPDMRAITPQQYFMYPQHESP
Run BLAST on NCBI

transcript from alignment at scaffold_469:83353..88253+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067325 ID=TCONS_00067325|Name=TCONS_00067325|organism=Clytia hemisphaerica|type=transcript|length=4901bp|location=Sequence derived from alignment at scaffold_469:83353..88253+ (Clytia hemisphaerica)
tcTTAGATCACTAAGAAGAAGCGCTTGAAATCTCGCAAAGAGAGAAACAA
ATCAAGAAAGCAACGCCAGAAGCACAAAAATGCATCTACGCCATCGGCAA
ACATTAAGGAATCCACCCCAACAGACCCCTCCCCGTCGCAAGATCGCATT
AAAGTGAAACGTAAAACAAAACGCGTGAAGCCGGAGGGCGGAAGTAGTGG
GCAGATCGGGCGCATGGCGTACACATCACGTACTCATAAATCGGACTGTC
AAAAGTGTTTATACCATGACCATGCGGATTGTTTCGACAGAATCACAAAC
TCTTATGTTCAAGCGGGGCTTTTGGATAAAGAATCGTCGTGTCATGGTAA
CAACACACCACCGTGTGAGAAATGTAACCCCAGTTTTTATTTCTACGACA
CGGGTGACGATCCAGTATTACCACATCATTTATCCAGTTATTCTCTCTAC
GGTGAGTAAACAGTCTCTCCGCCTTTCAAAGGGTGTCCGAGTCATGCAAG
ACAAGAAAGATTAAATCACTTGATGGtattaaaaatatacaatgaaaacG
AAATCTTTAGAGATCACTGGGCCTCACACGAAGAATTTCCATCTTTTTTG
TCTCTACTACTGCCCTCTTTAATAGCCCTTTTTTTTTGTGGACATTCGAA
TTGATTATTCGCGAACCCTAGAGAGATAACAGTTGACTAGTATAATTTTC
TTCCCGTACAGACATGCGTATGCCGAGTTACGCCAATACGGAAGTGAACC
CTACGTTAGAATTAGCACGCCGTATTACAGCATTCAATTACCGTAACGGG
AAAGTACCACAGCGCATGAGCAGAATGTTTGCTATATGGAGCAATTTGGA
TATGAAGAAAGACGAACCTCCAAAAGTAAGTTCTCTCATGATATTATCTG
cgtttagtttttcttttggtTTCTGTAAGCCTCAATCTCGGTTAAagtat
attgagaattttgattgattcctcgtttttagcaatttaaagtttgggcg
agaaagtcgcttttgggctaattgataaatttattcaaatattacaattc
gggaggggtttagacttccaggctatattctgagccaaATTGgaacaatt
ttcaatttttggatcCTCAGCTGCTAAGATCCTAAGACTTAAGTCTAGCG
TCAAAAATCTACctttccaacctaatttagagcgcttccataccgtttgt
aagatttcgtggggaatttccgtttttctcaaatattatgactttgattg
ctGCATTATTGGTACTAGAGAGTTTTTTGTCAATAACTACAGTATCGTTT
GAAATGTATAAATTGTTAGTCAAAGAATCGTTTATGTTATTCTGTTGGTA
AGAGAAACAGATCACACCTACACACCTCTTATAACGTTATCAAGTATCAC
AAttctaaaccaatcaaaatacgAGCATAGAAAACTGTACTCGGTCTGCC
CTGGCACCCTAGTCCGTTGCTGAAGCCATCGCCATCAAACAAATCGAAAA
GATTGGGATTAGCAAACGGGTTATCGCCATGTTTCCGAGTTAACAAATTA
TACGCTAATTTCTTTTCCATTCTCATTAGTACTCAATTCAttgaacattt
ttctttttcttcttgcaGCGAAATCTGTTGAATCAAGGTGACAATTTGGA
ATATTTCACAAACCGATTGAAGAAAGTTCATTCATCGTTTACACCCAACA
AGAAACCCATTAAAACGACCTTAAGTGGTAAGTCCAAATCATCTCATTTA
GCCAATCCCTCATTCACTTTCTCACTCACGCTATCCCTCTCCACAACTCT
ATGAGAATTCGCTTTCTTAAAAGCGTGTAGTTAATGGATTCTGAAATTAA
CAAAGATATTGGGTTTTGTGAAAACAATCCTTTCCTCGCTTTTCAACTCA
TCAAAACTCATCCTCGTTCCCACTGAACTTCACTCCTTCATATCTccctt
gttttttctttttcagagaaGAACCTGGTGGACCAGTTAGTGTACCAACA
TTCTCAAGCCATGAACCGTCTCCATTCAACGCGAAACGTAACCAATCTAT
CTTCACAATCCACAAAGAATCATAAACTAGCCAGTCAAACGGCAACGAAG
AGAAATACAAAACATCTTCCGAAATTAGATACTTTATCACCAACAACTTC
AAGTGTAAGACTTAATTTACTGCAAGGAAGCTTTTTCTTTTGTAGTTTGT
AGTACAGTAATTGCCGGTTCACTCGCAGGCTCGGTCATtacttaaccctt
tgagtgccagggtccttttttctaagttttttttaaaaaatcgctagttc
aaactttaagggcttatatctcctgatctagaaggaattagNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaaatgtgattttttggtgtttttcagcatttttgagtgagttta
ggccaaaaattgagaaatctaaaaaaaaaaataatttttgcaatttttct
ttaaccttACCGGAAAAGATACAACGTTgattcaacgttcatctaacgtt
atgtgGACGTTGTGACCACCAggtaaacgttgaaacaacgttgtgtgcta
gctgggtaTTGCACCAGCATGAAAACTGATGGAAACACCACATTTTTGGC
TGTAATTGTTTTATTGTATTTAATTGTTTTCAAACTTGTATACTTTTTTA
CTCTTAGATTTCGCCAAAACGGATGGACAGTAGTTTACGTGGTGCGCATG
CACAATACATGGCATCGAGAACCGCAAGTCAAAAGTCTGGAAAACTCATA
GGGTTGAAACCCCCTTCATTGGACGATTCTTCGTCTTACAAAGAGCGGTA
TGTAACATtttttaaggtatgtgttcaccttccttgacacattctcttta
attgatcatatctttagaacaacaaatttttatacatcaaaagtatatat
tttctgaaagccaataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAATGGtcataactctggatcaaaaaa
agattttaagatcgcgattttaccaaaatgaaatccagtaacttttcttc
cactttgactgaaaaaagaatttttgacaaaaaatcggaaaaaaggtgta
cacatacctacAAATTGAAAGATAAACTGATGACTATGGTGGTATGCTTC
ACAACGCAACAATGGCTTAGTAAAAGCAATTCAAatcaattccttatttt
ttcactttttcagaaTTTCGNATGGCTTAGTAAAAGCAATTCAAATCAAT
TCCTTATTCTTTCACTTTTTCAGAATTTCGCAAGAAGTATACAAACCGCC
GACCGAGGTATTTACTATTGTTCTAACAAACAACTTCTTTACATGTTATT
GTTGCTTTTCATATTCGTTCTTTTATAACATAAACGGACTAGGATTCGAT
GTcgacataaattttgaaaatcattcaGAGACATTATGTACACGAAGAAG
AATATTTAGGAAATTATTtaagactttcaaaaaaaaaaaattttgttttt
cttttttcagaagaGACTGTTATCACAAAAAGACATCCTGGGTCCGGCGC
AATACGCTGATTTCGATGTTATCTCCTCCGAGAGATGTAAAAGTGGACGG
AGAAGTGCTCAAAGGGCGTCACCAGATATGCGCGCCATAACGCCACAACA
ATACTTCATGTACCCTCAACACGAAAGCCCATGAGCCTCTTCAGTATTGC
TGTCCGTAAAAGCGAAGTATTTTTTTGGAAGCTGGTATGTAACGTAAGTC
TGGATCTCGTCAGGGTATGTAATTTCTTAGAACATGAAAAGGGCCTGGGA
TCTAGCTAAGGTTCGACTTGCTATTAGTAAGTGTTTATGTGTAGGAAATC
TGGACCCTCCTCCTTATGAAGTGATCTTTCATTACTTTCATCGATTCATC
CTCCCATACGAAGATTATTTCGAAAATACTTAGCAGGAACCAATTGAGCT
T

Coding sequence (CDS) from alignment at scaffold_469:83353..88253+

>TCONS_00067325 ID=TCONS_00067325|Name=TCONS_00067325|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_469:83353..88253+ (Clytia hemisphaerica)
ATGGCGTACACATCACGTACTCATAAATCGGACTGTCAAAAGTGTTTATA
CCATGACCATGCGGATTGTTTCGACAGAATCACAAACTCTTATGTTCAAG
CGGGGCTTTTGGATAAAGAATCGTCGTGTCATGGTAACAACACACCACCG
TGTGAGAAATGTAACCCCAGTTTTTATTTCTACGACACGGGTGACGATCC
AGTATTACCACATCATTTATCCAGTTATTCTCTCTACGACATGCGTATGC
CGAGTTACGCCAATACGGAAGTGAACCCTACGTTAGAATTAGCACGCCGT
ATTACAGCATTCAATTACCGTAACGGGAAAGTACCACAGCGCATGAGCAG
AATGTTTGCTATATGGAGCAATTTGGATATGAAGAAAGACGAACCTCCAA
AACGAAATCTGTTGAATCAAGGTGACAATTTGGAATATTTCACAAACCGA
TTGAAGAAAGTTCATTCATCGTTTACACCCAACAAGAAACCCATTAAAAC
GACCTTAAGTGagaaGAACCTGGTGGACCAGTTAGTGTACCAACATTCTC
AAGCCATGAACCGTCTCCATTCAACGCGAAACGTAACCAATCTATCTTCA
CAATCCACAAAGAATCATAAACTAGCCAGTCAAACGGCAACGAAGAGAAA
TACAAAACATCTTCCGAAATTAGATACTTTATCACCAACAACTTCAAGTA
TTTCGCCAAAACGGATGGACAGTAGTTTACGTGGTGCGCATGCACAATAC
ATGGCATCGAGAACCGCAAGTCAAAAGTCTGGAAAACTCATAGGGTTGAA
ACCCCCTTCATTGGACGATTCTTCGTCTTACAAAGAGCGAATTTCGCAAG
AAGTATACAAACCGCCGACCGAGaagaGACTGTTATCACAAAAAGACATC
CTGGGTCCGGCGCAATACGCTGATTTCGATGTTATCTCCTCCGAGAGATG
TAAAAGTGGACGGAGAAGTGCTCAAAGGGCGTCACCAGATATGCGCGCCA
TAACGCCACAACAATACTTCATGTACCCTCAACACGAAAGCCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042074XLOC_042074Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067325-proteinTCONS_00067325-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067325-exon-scaffold_469-1491911889:83353..83803TCONS_00067325-exon-scaffold_469-1491911889:83353..83803Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:83353..83803TCONS_00067325-exon-scaffold_469-1510915933:83353..83803Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:83353..83803TCONS_00067325-exon-scaffold_469-1575043694:83353..83803Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1491911889:84064..84227TCONS_00067325-exon-scaffold_469-1491911889:84064..84227Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:84064..84227TCONS_00067325-exon-scaffold_469-1510915933:84064..84227Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:84064..84227TCONS_00067325-exon-scaffold_469-1575043694:84064..84227Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1491911889:84971..85079TCONS_00067325-exon-scaffold_469-1491911889:84971..85079Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:84971..85079TCONS_00067325-exon-scaffold_469-1510915933:84971..85079Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:84971..85079TCONS_00067325-exon-scaffold_469-1575043694:84971..85079Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1491911889:85319..85506TCONS_00067325-exon-scaffold_469-1491911889:85319..85506Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:85319..85506TCONS_00067325-exon-scaffold_469-1510915933:85319..85506Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:85319..85506TCONS_00067325-exon-scaffold_469-1575043694:85319..85506Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1491911889:86610..86749TCONS_00067325-exon-scaffold_469-1491911889:86610..86749Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:86610..86749TCONS_00067325-exon-scaffold_469-1510915933:86610..86749Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:86610..86749TCONS_00067325-exon-scaffold_469-1575043694:86610..86749Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1491911889:87576..87609TCONS_00067325-exon-scaffold_469-1491911889:87576..87609Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:87576..87609TCONS_00067325-exon-scaffold_469-1510915933:87576..87609Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:87576..87609TCONS_00067325-exon-scaffold_469-1575043694:87576..87609Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1491911889:87813..88253TCONS_00067325-exon-scaffold_469-1491911889:87813..88253Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1510915933:87813..88253TCONS_00067325-exon-scaffold_469-1510915933:87813..88253Clytia hemisphaericaexon
TCONS_00067325-exon-scaffold_469-1575043694:87813..88253TCONS_00067325-exon-scaffold_469-1575043694:87813..88253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:83353..88253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.511439	0.209993	0.121911	0.149089	86.2131	69.3028	25.99	28.5109	7.68959	13.0088	9.84498	5.23473	0.447556	0.576341	0.427976	0.393672	3.41501	0.455657	0.0286143	0.0598856	0.9109	1.44717	1.2654	1.71162	19.6235	22.8526	1.73476	1.37869	1.58347	0.974069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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