TCONS_00067436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067436
Unique NameTCONS_00067436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067436 ID=TCONS_00067436|Name=TCONS_00067436|organism=Clytia hemisphaerica|type=transcript|length=378bp
TTAACGAAGCTGAGTAAACATGGGGAAACAAATTCTCAATGCATACAGGT
GTTTGAACTAAAGTGTGACGTGTACCCTGTTTTGCTGAAACTGAAATTAA
GAAGGTAAAATACCAATTTgattatcattattatttgaGAAGCATGCTAA
CAAATGATTAATCGCAAAttttaataatgtttttcattaatttgtgtttg
tgttttttatttttattacaagGTTGTACTTGTACCCATCTACTTTGTGA
GGAGTATGGCAAAGGACTTCTTGATGTGGGCTGTGTTGATATGGTGGGCG
GAACCCATCATATGATGTCACTACTGTATAATGGAAGACATACTATAGAT
TGGTTCAAATATGAATCATCCATAATAC
Run BLAST on NCBI

transcript from alignment at scaffold_47:138795..139455+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067436 ID=TCONS_00067436|Name=TCONS_00067436|organism=Clytia hemisphaerica|type=transcript|length=661bp|location=Sequence derived from alignment at scaffold_47:138795..139455+ (Clytia hemisphaerica)
TTAACGAAGCTGAGTAAACATGGGGAAACAAATTCTCAATGCATACAGGT
GTTTGAACTAAAGTGTGACGTGTACCCTGTTTTGCTGAAACTGAAATTAA
GAAGGTAAAATACCAATTTgattatcattattatttgaGAAGCATGCTAA
CAAATGATTAATCGCAAAttttaataatgtttttcattaatttgtgtttg
tgttttttatttttattacaaggtaaaaaatttcatttctactCTTTTCC
CATCGTGAAACAATCTCATGTTCAACCTTTGGCAATATGAAATCTCCCTC
CTTTAGTCTTTATCAGATTTCATCATCTTCATCCGCAAGGCTCGCCCTCA
ATAATCACCTCCCAAAAGGCCTAATCGTTGGGAAACATGTATCACTTGCA
CAAATTTAGCCCGTTCTCGTACCCTACAAAGTGCAGCAACAACAACTTAG
CCTTAATGTCACATTACTTAGTTAATTTAACAAAGTCGTTTTGGTTATTC
AACAGGTTGTACTTGTACCCATCTACTTTGTGAGGAGTATGGCAAAGGAC
TTCTTGATGTGGGCTGTGTTGATATGGTGGGCGGAACCCATCATATGATG
TCACTACTGTATAATGGAAGACATACTATAGATTGGTTCAAATATGAATC
ATCCATAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042125XLOC_042125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067436-exon-scaffold_47-1491911889:138795..139016TCONS_00067436-exon-scaffold_47-1491911889:138795..139016Clytia hemisphaericaexon
TCONS_00067436-exon-scaffold_47-1510915933:138795..139016TCONS_00067436-exon-scaffold_47-1510915933:138795..139016Clytia hemisphaericaexon
TCONS_00067436-exon-scaffold_47-1575043694:138795..139016TCONS_00067436-exon-scaffold_47-1575043694:138795..139016Clytia hemisphaericaexon
TCONS_00067436-exon-scaffold_47-1491911889:139300..139455TCONS_00067436-exon-scaffold_47-1491911889:139300..139455Clytia hemisphaericaexon
TCONS_00067436-exon-scaffold_47-1510915933:139300..139455TCONS_00067436-exon-scaffold_47-1510915933:139300..139455Clytia hemisphaericaexon
TCONS_00067436-exon-scaffold_47-1575043694:139300..139455TCONS_00067436-exon-scaffold_47-1575043694:139300..139455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:138795..139455 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.629782	0.204712	0.237691	0.69763	0.849297	0.447417	0	1.26336	0.176902	0	0	0	4.18848	1.15994	0	0	0.472775	3.55358	11.381	14.4781	8.32176	7.72212	2.16629	2.84479	3.38085	5.43119	0	0.307204	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top