TCONS_00067437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067437
Unique NameTCONS_00067437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067437 ID=TCONS_00067437|Name=TCONS_00067437|organism=Clytia hemisphaerica|type=transcript|length=648bp
AGGTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCA
GCACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTT
AGCGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAA
TCCTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCT
GTGAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGACAGCGATCTT
ACCCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGGTATCGGGGC
CAGTCATCGAACACGCGTTTGTCACAACATCATGCCACAACCTGATTCGA
CGCCTAATTGCATCGGACCTAAGTACCAGTTACGACAATGTTTTTTAAGG
ATATGtaattgaaaattcaattttaaacaTTTCGAAGGATTAAATCCATC
TTATGAATAATTGCATTGGGTTATTATTTCAAGGAACGGTAGAAGTAACC
ATTTCTTTCGTAATTTATTTGTTGGAACGATTTTTAGAGGGAAAAACTGG
GTATTTTATTGTTGTTGAAAATATCTTTgtgtacatttttatttgaacCA
CTTCCAATTGTTATTGAAGAATTTGACTGTTTCCTGGTAACTTCTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_47:139752..140608+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067437 ID=TCONS_00067437|Name=TCONS_00067437|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at scaffold_47:139752..140608+ (Clytia hemisphaerica)
AGGTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCA
GCACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTT
AGCGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAA
TCCTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCT
GTGGTAAGATAAATACCTTCCCGTGGAGTACATTTGCGAAGCTTTCAAAG
TGCTAGGAAGAGTAGTTGAATGCGGAGTTAAATAATTCTTGGCCTTCAAA
AACTAGACCCAATAATATCACTTTAAATAATGCGACTTTACAGATCCTTT
GTTATTATCAAGTCATTTAAACAACCTACTGGATATTACTTCCTTATCTT
TTTTTCACCTAGAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGAC
AGCGATCTTACCCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGG
TATCGGGGCCAGTCATCGAACACGCGTTTGTCACAACATCATGCCACAAC
CTGATTCGACGCCTAATTGCATCGGACCTAAGTACCAGTTACGACAATGT
TTTTTAAGGATATGtaattgaaaattcaattttaaacaTTTCGAAGGATT
AAATCCATCTTATGAATAATTGCATTGGGTTATTATTTCAAGGAACGGTA
GAAGTAACCATTTCTTTCGTAATTTATTTGTTGGAACGATTTTTAGAGGG
AAAAACTGGGTATTTTATTGTTGTTGAAAATATCTTTgtgtacattttta
tttgaacCACTTCCAATTGTTATTGAAGAATTTGACTGTTTCCTGGTAAC
TTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042126XLOC_042126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067437-exon-scaffold_47-1491911889:139752..139954TCONS_00067437-exon-scaffold_47-1491911889:139752..139954Clytia hemisphaericaexon
TCONS_00067437-exon-scaffold_47-1510915933:139752..139954TCONS_00067437-exon-scaffold_47-1510915933:139752..139954Clytia hemisphaericaexon
TCONS_00067437-exon-scaffold_47-1575043694:139752..139954TCONS_00067437-exon-scaffold_47-1575043694:139752..139954Clytia hemisphaericaexon
TCONS_00067437-exon-scaffold_47-1491911889:140164..140608TCONS_00067437-exon-scaffold_47-1491911889:140164..140608Clytia hemisphaericaexon
TCONS_00067437-exon-scaffold_47-1510915933:140164..140608TCONS_00067437-exon-scaffold_47-1510915933:140164..140608Clytia hemisphaericaexon
TCONS_00067437-exon-scaffold_47-1575043694:140164..140608TCONS_00067437-exon-scaffold_47-1575043694:140164..140608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:139752..140608 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15812	1.06516	0.520542	0.847486	0.377557	0.664974	0	0	0	0	0	0.110857	2.26621	2.30635	0	0.130865	1.29736	2.39852	8.95135	8.2002	4.18822	5.67083	0.5274	1.24853	2.34056	2.5138	0.276135	0.00222781	0.314907	0
Blast
[Close]
BLAST of TCONS_00067437 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 9.301e-22
Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 2 
Query:   29 VKVDGGFSTWSSWSMCTLSCGIGFSERVRECNNPSPLNGGNPCVGQTLQTRHCYHGACEYRKEVLEPIIVDSDLTQWSSWSTCDKSCGIGASHRTRVCHNIMPQPDSTPNCIGPKYQLRQCFLRIC 406
            V+V GGFS WS+W  C+++CG G  +R R CN P P NGG PC G  L+ R+C +  C           VD   ++WS W  C +SCG G   RTR C+N   Q    P C G   ++  C +R C
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP----------VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRP-CEGNAVEIIMCNIRPC 4640

HSP 2 Score: 77.7962 bits (190), Expect = 4.632e-16
Identity = 48/129 (37.21%), Postives = 62/129 (48.06%), Query Frame = 2 
Query:   20 HTPVKVDGGFSTWSSWSMCTLSCGIGFSERVRECNNPSPLNGGNPCVGQTLQTRHCYHGACEYRKEVLEPIIVDSDLTQWSSWSTCDKSCGIGASHRTRVCHNIMPQPDSTPNCIGPKYQLRQCFLRIC 406
            + P  VDG +S WS W  CT SCG G   R R CNNPS  +GG PC G  ++   C           + P  V    + W  W TC +SCG G   R R+C+N  P    +  C G + Q++ C  R C
Sbjct: 4580 NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCN----------IRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGS-YCDGAETQMQVCNERNC 4697
The following BLAST results are available for this feature:
BLAST of TCONS_00067437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN19.301e-2240.48Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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