TCONS_00067438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067438
Unique NameTCONS_00067438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067438 ID=TCONS_00067438|Name=TCONS_00067438|organism=Clytia hemisphaerica|type=transcript|length=1576bp
GTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCAGC
ACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTTAG
CGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAATC
CTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCTGT
GAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGACAGCGATCTTAC
CCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGGTATCGGGGCCA
GTCATCGAACACGCGTTTGTCACAACATCATGCCACAACCTGATTCGACG
CCTAATTGCATCGGACCTAAGTACCAGTGGCCTGCCAGACATAAGTTCAG
TCACATCAACCAATCAACTTTAGAAGTTTTTAACGGGAAATGGAgcttat
caaactttttgtcaCGACGTTATTTTTATCAGTCATTCCATACATTGCAT
GTAGTTATGTGgatttgaatttgttttgtgAAGAATACAGTGACGGGCTC
ATTGATGTTGCTTGTGTTGAAAAAGTTGGTAACACTCAACATATGAAAAA
ATTGATCTACAATGGACGAAATGATATCGACTGGGAGCGCTATGGTAAAT
CTATAAAGAGaATTCTTTGTAAATGTAATGAATTGGTGAAGAAATCAGGA
AAGAAATATTTAACATTGGGAATACAATTTTATGGAGAATGTTGGGTTAG
TGAACATCGagttgaagatattttaaaagaAGTTCCGAAATCGAAATTGT
GCGTGAACCATAAATACAAAGCATGCAAACCTAGAAGTTTCCACCAGAAA
GCAGCAGGGCGTAACGGATACGAGATCAAAGTTAATACACACGCATGCGC
AGGGAATGACAAATCGACTGCCTTGTACACTTATTATCATTTGCATGAGA
TTCAAATTGAGGTCTTGGAAGAAGCAAAAGAGACAGAGTGGACCTCATGG
ACAACATGCAGTAAAAGTTGTGGTAAAGGATATCAAGAAAGATCACGAAC
AGCTTGTGAAATGGTCTCTGGTGTTCACAGATGCGATGTCATGAAGGTGG
ACAGACGTGAATGTAATTACCAAAGTTGTGCCTTGACGGAGCCAGCGAAA
GCAGCATTTCGACCAATCAATGGAGGTTTTAGTGAATGGACAAGTTGGAC
ACCGTGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTG
ACAATCCAAAACCTCAAAATTCTGGCAAAAATTGTGTCGGTGAacctttt
caaatgaaattgtgcaaatatgaagaatgttaaaTTTAAGAATCTGGTTA
TATCTTTGTATTGATTATGTTATGGTATTGGCAAATTTGTTTTTGTCTTA
ACTCTTTTCGGTCGAATCatcttttaaatatttaattGTTAACTTATCGT
AGAGACTAATCTAATTTATGAGTCAGCAAGTGACGTTTTATGTATGCCAT
CCAAAACGCAATAGCTTGATTGCTAAATGTTTGTAATTTTCATGGGTTTC
GTTTTCATGAAATGTAAtcctttttt
Run BLAST on NCBI

transcript from alignment at scaffold_47:139754..143330+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067438 ID=TCONS_00067438|Name=TCONS_00067438|organism=Clytia hemisphaerica|type=transcript|length=3577bp|location=Sequence derived from alignment at scaffold_47:139754..143330+ (Clytia hemisphaerica)
GTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCAGC
ACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTTAG
CGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAATC
CTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCTGT
GGTAAGATAAATACCTTCCCGTGGAGTACATTTGCGAAGCTTTCAAAGTG
CTAGGAAGAGTAGTTGAATGCGGAGTTAAATAATTCTTGGCCTTCAAAAA
CTAGACCCAATAATATCACTTTAAATAATGCGACTTTACAGATCCTTTGT
TATTATCAAGTCATTTAAACAACCTACTGGATATTACTTCCTTATCTTTT
TTTCACCTAGAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGACAG
CGATCTTACCCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGGTA
TCGGGGCCAGTCATCGAACACGCGTTTGTCACAACATCATGCCACAACCT
GATTCGACGCCTAATTGCATCGGACCTAAGTACCAGTTACGACAATGTTT
TTTAAGGATATGtaattgaaaattcaattttaaacaTTTCGAAGGATTAA
ATCCATCTTATGAATAATTGCATTGGGTTATTATTTCAAGGAACGGTAGA
AGTAACCATTTCTTTCGTAATTTATTTGTTGGAACGATTTTTAGAGGGAA
AAACTGGGTATTTTATTGTTGTTGAAAATATCTTTgtgtacatttttatt
tgaacCACTTCCAATTGTTATTGAAGAATTTGACTGTTTCCTGGTAACTT
CTAACAGGCAGCATGttcaatttattgtttttaaatcttCCAAGCAACCT
CATTAGAGATCAGTCAGGCCGCTAATGTCAGAACCAAATAAAAACGATAC
CAAAAATTATAATGAACCTTGATTAAATTTACATTTCGATTCTAAACTGT
TTGAATGTTGATTTGATTAAATCatgatataaaaatataaattcagGTGG
CCTGCCAGACATAAGTTCAGTCACATCAACCAATCAACTTTAGAAGTTTT
TAACGGGAAATGGAgcttatcaaactttttgtcaCGACGTTATTTTTATC
AGGTAAGCTATACTTCTAATGACCTTTGATAAATTCTTTGAAAGGCTGAT
AATATTTTTGGGctctcacttttgttttcataaagttttctattcataaa
atggCCTTATACatgttatatgcaatttttttgacgtcaccTCTGACAAA
CCTATTGTCTAACCACTTTCCTAGTTAATAATGACTAGAAAATCTTTTCT
CAAACTTCAAGCTTGAAGCTTTCTATAATTTCGTTTTCTTTGCTTTCAGT
CATTCCATACATTGCATGTAGTTATGTGgatttgaatttgttttgtgAAG
AATACAGTGACGGGCTCATTGATGTTGCTTGTGTTGAAAAAGTTGGTAAC
ACTCAACATATGAAAAAATTGATCTACAATGGACGAAATGATATCGACTG
GGAGCGCTATGGTAAATCTATAAAGAGGTTCGTACTTTGTAATACTGTAT
AGAAGAGgccaattttcacgcattcacgcaaccaaaaatgcCTATTCACG
CATTCCGGGATAGGGGGTGCCTTAGATAAATttagatttgagattttttt
aaaagtaataCAACACTCTGCATTACAAGTTTTAAGTGGTTGGACTTAAC
CATAAATCTGATACCCATTATCGTCTAGCCCTAGAACAATCGGTCTACTG
TTGTCAAATCTAATCTTTGGACGCTGTAAAATACGTGTCCAGAAGACCTC
AGTTTTccaataattttgttttttcgtttttatagaATTCTTTGTAAATG
TAATGAATTGGTGAAGAAATCAGGAAAGAAATATTTAACATTGGGAATAC
AATTTTATGGAGAATGTTGGGTTAGTGAACATCGagttgaagatatttta
aaagaAGTTCCGAAATCGAAATTGTGCGTGAACCATAAATACAAAGCATG
CAAACCTAGAAGTTTCCACCAGAAAGCAGCAGGGCGTAACGGATACGAGA
TCAAAGTTAATACACACGCATGCGCAGGGAATGACAAATCGACTGCCTTG
TACACTTATTGTGAGTATTTATTTTAATctctttgaaaatatatttcttt
tttcagcaATGTTTCCACCATCTTTCTAGGACCTAAAAATTCTACATCCC
TTGTTGGCAATGATTTTATGTTCGTTTATCTTTTGGTCTATGAATTATTA
TGATGTGTGGGGGTCCCCCAAATCCCTTTCTTAGTGGATAGAAAAGCCCT
GATAGATATCAAATATATCTATGATATCAGACCAGACTGGAACACTTTAT
TTGGATCATCTGATAGATTATGATTAACATTTTTCCAATTATCTTAACTT
TACCCTCAGATCATTTGCATGAGATTCAAATTGAGGTCTTGGAAGAAGCA
AAAGAGACAGAGTGGACCTCATGGACAACATGCAGTAAAAGTTGTGGTAA
AGGATATCAAGAAAGATCACGAACAGCTTGTGAAATGGTCTCTGGTGTTC
ACAGATGCGATGTCATGAAGGTGGACAGACGTGAATGTAATTACCAAAGT
TGTGGTAAGAAATCCTCGAAGAAATCTATctagaaaaacgttaaaaacaa
cattttgtaGCCTTTCAAAATTCTGTTGGATAAAAATATGTGTTTAGCAA
TTGCTGTCACATGCAATTTACACTTTTGGTCAATGCACCTGACTCTTCAT
ATGCTACTCCGAGCTACTCctcatttttataagcatctccaattttcggg
tcagtcCTGGGAtcgcttagcattctagctcattttttgaaatatttgct
tcgACCACGCTTGATATCATACCATATTTATACTTATTtggtcaagggct
atcgttaGACATGGTTAGATTATCTTATagaaaaagcttttactttacaa
GATAGGGAAACAAATTTAGCTAATTTGCGGCTTCAAGCCTTAGCAATCTG
GTTGCTTGTCAAATGGAAAATGTTTCACAGAAAGGATATAGGTTTTAAAC
ATTGATTTCACAATTTACAATTTTAATCTAGCCTTGACGGAGCCAGCGAA
AGCAGCATTTCGACCAATCAATGGAGGTTTTAGTGAATGGACAAGTTGGA
CACCGTGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGT
GACAATCCAAAACCTCAAAATTCTGGCAAAAATTGTGTCGGTGAaccttt
tcaaatgaaattgtgcaaatatgaagaatgttaaaTTTAAGAATCTGGTT
ATATCTTTGTATTGATTATGTTATGGTATTGGCAAATTTGTTTTTGTCTT
AACTCTTTTCGGTCGAATCatcttttaaatatttaattGTTAACTTATCG
TAGAGACTAATCTAATTTATGAGTCAGCAAGTGACGTTTTATGTATGCCA
TCCAAAACGCAATAGCTTGATTGCTAAATGTTTGTAATTTTCATGGGTTT
CGTTTTCATGAAATGTAAtcctttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042126XLOC_042126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067438-exon-scaffold_47-1491911889:139754..139954TCONS_00067438-exon-scaffold_47-1491911889:139754..139954Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:139754..139954TCONS_00067438-exon-scaffold_47-1510915933:139754..139954Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:139754..139954TCONS_00067438-exon-scaffold_47-1575043694:139754..139954Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1491911889:140164..140338TCONS_00067438-exon-scaffold_47-1491911889:140164..140338Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:140164..140338TCONS_00067438-exon-scaffold_47-1510915933:140164..140338Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:140164..140338TCONS_00067438-exon-scaffold_47-1575043694:140164..140338Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1491911889:140800..140905TCONS_00067438-exon-scaffold_47-1491911889:140800..140905Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:140800..140905TCONS_00067438-exon-scaffold_47-1510915933:140800..140905Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:140800..140905TCONS_00067438-exon-scaffold_47-1575043694:140800..140905Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1491911889:141153..141330TCONS_00067438-exon-scaffold_47-1491911889:141153..141330Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:141153..141330TCONS_00067438-exon-scaffold_47-1510915933:141153..141330Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:141153..141330TCONS_00067438-exon-scaffold_47-1575043694:141153..141330Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1491911889:141639..141913TCONS_00067438-exon-scaffold_47-1491911889:141639..141913Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:141639..141913TCONS_00067438-exon-scaffold_47-1510915933:141639..141913Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:141639..141913TCONS_00067438-exon-scaffold_47-1575043694:141639..141913Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1491911889:142213..142407TCONS_00067438-exon-scaffold_47-1491911889:142213..142407Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:142213..142407TCONS_00067438-exon-scaffold_47-1510915933:142213..142407Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:142213..142407TCONS_00067438-exon-scaffold_47-1575043694:142213..142407Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1491911889:142885..143330TCONS_00067438-exon-scaffold_47-1491911889:142885..143330Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1510915933:142885..143330TCONS_00067438-exon-scaffold_47-1510915933:142885..143330Clytia hemisphaericaexon
TCONS_00067438-exon-scaffold_47-1575043694:142885..143330TCONS_00067438-exon-scaffold_47-1575043694:142885..143330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:139754..143330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.495121	0.567362	0.251278	0.130322	0.388479	0.572551	0.293839	0.400517	2.09184	0.526567	2.36025	7.22293	2.72826	2.76397	1.34311	0.795797	0.994144	1.37004	3.32061	4.72543	3.30932	3.05951	15.2435	22.6169	11.639	14.9204	0	0.0559455	0.0424327	0.13572
Blast
[Close]
BLAST of TCONS_00067438 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.178e-19
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 3 
Query:    6 IKRSHTPVKVDGGFSTWSSWSMCTLSCGIGFSERVRECNNPSPLNGGNPCVGQTLQTRHCYHGACEYRKEVLEPIIVDSDLTQWSSWSTCDKSCGIGASHRTRVCHN 326
            + R    V+V GGFS WS+W  C+++CG G  +R R CN P P NGG PC G  L+ R+C +  C           VD   ++WS W  C +SCG G   RTR C+N
Sbjct: 4519 LVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP----------VDGSWSEWSLWEECTRSCGRGNQTRTRTCNN 4615
The following BLAST results are available for this feature:
BLAST of TCONS_00067438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.178e-1942.06Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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