TCONS_00067440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067440
Unique NameTCONS_00067440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067440 ID=TCONS_00067440|Name=TCONS_00067440|organism=Clytia hemisphaerica|type=transcript|length=1872bp
GGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAATCCAAAACC
TCAAAATTCTGGCAAAAATTGTGTCGGTGAaccttttcaaatgaaattgt
gcaaatatgaagaatgttaaaTTTAAGAATCTGGTTATATCTTTGTATTG
ATTATGTTATGGTATTGGCAAATTTGTTTTTGTCTTAACTCTTTTCGGTC
GAATCatcttttaaatatttaattGTTAACTTATCGTAGAGACTAATCTA
ATTTATGAGTCAGCAAGTGACGTTTTATGTATGCCATCCAAAACGCAACA
GCTTGATTGCTAAATGTTTGTAATTTTCATGGGTTTCGTTTTCATGAAAT
GTAAtccttttttgatgtttttggcgacatcaataaaaaatcaaacaaat
tcattttctgtttttaatttcaaagggtgaagattgaatttgaaaagtca
aCTTTACTTCAAAGCGACAAAAGGGGGCCGAGTAAACacgtgaaaatgaa
gaaaaaatgaaaaacaattttcCCTTTCGAGAACAAAACTTTGTATCAAG
TATTAGTTTAGCAGGTTAAGCAACATTCATGCGTAAATTGAAAACGCTAT
CCGTTAAAACCAAATACGATCTTCAAATATTTGATTAACTGTAATTTGCA
GGTGTAGACCAAAACCCTTTGTGCTTTTATTCGCCCTTTGCAATTGTTAG
TAGCTTAGTATAAAATTCAAGAACCGTCTACGGTCAAGTTAATATgcaaa
aacttatttttagaaACGGTTCAGAGTGTTGGTTTTTAGACTCTTTAAAA
TGaatacaatcaaaatttcaacttttacaCTTTTATTATCAGTCATTCCA
TACATTGCATGTAGTTATGTGgatttgaatttgttttgtgGAGATTACAA
TAATGGGCTCATTGATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAAC
ACATGAAAACGTTGATCTACAATGGACGAAATGATATCGATTGGAATAAT
TACGGAGCGTCTGTTGAAAAAATCTTATGCAAATGTAAAAAGCTTGCGCA
AGATTCTGAAAAACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAAT
GTTGGGCCAGTGAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACG
TCCAACAAATGCGTCAACGGAACGTACAAAGAATGTCAACCACAGAATTT
TCATCGTAAAGTAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCAC
AAGCTTGTGCTGGTACTGATGTCTCAACTTCGCTATACACTTATTATTAT
CTACGAGAAGTGGAAATCGAGACTCCAGATATTGGTAAAGAGACAGAGTG
GACCTCATGGACAACATGTACTAAAAGTTGTGGTAAAGGATATCAAGAAA
GAACACGAACAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGATGTC
CTGAAAGAAGAGATGAGAGAATGCAACAAGCATGCATGTGaagaagagaa
agaagaattTCGACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGGT
CTCCATGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGT
GACAATCCAAAACCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTT
CCAAATGAGACCATGCTTCAAGATGAACTGCTGagAGCCAAGAGATGTAA
CCAAAGGAAAGTAAGAAGATGAATTTTTCGTATTTTGATTAAAATCAATC
CATTTGTAAATTTATTCGTTAATTAGAACAATATCGTTCAACAAACTAAA
AATTTCAGGCTTATTTTCATGGTTCCCTATAACCATTTAAACTAGCACCA
CTATTTTTACAACAAACCAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_47:143887..147694+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067440 ID=TCONS_00067440|Name=TCONS_00067440|organism=Clytia hemisphaerica|type=transcript|length=3808bp|location=Sequence derived from alignment at scaffold_47:143887..147694+ (Clytia hemisphaerica)
GGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAATCCAAAACC
TCAAAATTCTGGCAAAAATTGTGTCGGTGAaccttttcaaatgaaattgt
gcaaatatgaagaatgttaaaTTTAAGAATCTGGTTATATCTTTGTATTG
ATTATGTTATGGTATTGGCAAATTTGTTTTTGTCTTAACTCTTTTCGGTC
GAATCatcttttaaatatttaattGTTAACTTATCGTAGAGACTAATCTA
ATTTATGAGTCAGCAAGTGACGTTTTATGTATGCCATCCAAAACGCAACA
GCTTGATTGCTAAATGTTTGTAATTTTCATGGGTTTCGTTTTCATGAAAT
GTAAtccttttttgatgtttttggcgacatcaataaaaaatcaaacaaat
tcattttctgtttttaatttcaaagggtgaagattgaatttgaaaagtca
aCTTTACTTCAAAGCGACAAAAGGGGGCCGAGTAAACacgtgaaaatgaa
gaaaaaatgaaaaacaattttcCCTTTCGAGAACAAAACTTTGTATCAAG
TATTAGTTTAGCAGGTTAAGCAACATTCATGCGTAAATTGAAAACGCTAT
CCGTTAAAACCAAATACGATCTTCAAATATTTGATTAACTGTAATTTGCA
GGTGTAGACCAAAACCCTTTGTGCTTTTATTCGCCCTTTGCAATTGTTAG
TAGCTTAGTATAAAATTCAAGAACCGTCTACGGTCAAGTTAATATgcaaa
aacttatttttagaaACGGTTCAGAGTGTTGGTTTTTAGACTCTTTAAAA
TGaatacaatcaaaatttcaacttttacaCTTTTATTATCAGGTAAGTCA
TTTTTTGGAAGTTTAGTTGCGGTCATTTTTTGCCGTTATTCTTAGCCACG
TGATGTCTggtattacacttttttttataagagcatctaaattttaaagc
cttcggattttcttaaactttttaagtttcaaatgttcttcaaatttttc
ctcttttttctatatttttgtcTGTCTTCGAGTCCgcaaagctttttaaa
aatattctcaacttgttcttaatattttggccatcgaagccttatgttct
tatagtttgttccTATGAAACAACGTGTACCATTTAATCTCTGCATTAGT
TTTGAAGACTCCCCAACTGGTCATCTTAATCATACTTCTGGCAAAATGAA
GATACTAAAGCAATCATAGGCTTTCACTGTTCCTCATCCGGGGCTAAAAT
GTTAACAATTTTGACGTGTATAGTATATATCTTTTTCGCTCTTTCAGTCA
TTCCATACATTGCATGTAGTTATGTGgatttgaatttgttttgtgGAGAT
TACAATAATGGGCTCATTGATGTTGCTTGTCTTGAAAGGATTGGTGACAC
TCAACACATGAAAACGTTGATCTACAATGGACGAAATGATATCGATTGGA
ATAATTACGGAGCGTCTGTTGAAAAGTATGATCACTTTGTACTTATTTAT
ACTCTATGTTTTAttcaaattatcaattttaaCACTTTGAAGATTATTTC
AAGATAAGATCCAAGGTTCTGCACCCCGTCACTGATCCACTGAGTTGCAC
TAGTGTATGTGAATTATCTTCAAAAAATGACATCATCCCTTGTTTGTCAT
TCGGTTAAGGATTTCTGTAAAAGTAATTCTACAGTTTGCACCGAATGgcc
ttttaaataattttgtttttctgcCATTATAGAATCTTATGCAAATGTAA
AAAGCTTGCGCAAGATTCTGAAAAACAATATTTGAGTTTTGGAATCCAAT
TTTACGGTGAATGTTGGGCCAGTGAATATTCAGTTGAAGACCTCTTGAAG
AAAGTTCCAACGTCCAACAAATGCGTCAACGGAACGTACAAAGAATGTCA
ACCACAGAATTTTCATCGTAAAGTAGAGGGACTAAATGGAGGAGAAATTA
CTATCCAATCACAAGCTTGTGCTGGTACTGATGTCTCAACTTCGCTATAC
ACTTATTGTGAGTATTGTATTGTTGTTGTTAGCGCTCAGACGTATGACAT
TTATTTCAAAACGCAAGATAAACTAGTTGTCATCAGTGCAAATTCTTTAT
AACCTTTGAGGTTATTTTATATTAACTTCTTTTTTGTCAAAACGCCTTGA
AACAatcgaatttggccaaaaatctaaaaattttaacaacCTATGACATT
GGATTTTATTTCATAGCTTCCACAATcctggccataatatttgagacNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNcattcattcattcattcattcattcatat
tcATTTACTTTAAGATTATCTACGAGAAGTGGAAATCGAGACTCCAGATA
TTGGTAAAGAGACAGAGTGGACCTCATGGACAACATGTACTAAAAGTTGT
GGTAAAGGATATCAAGAAAGAACACGAACAGCTTGTGAAATGGTCTCTGG
TGTTCGCAGATGCGATGTCCTGAAAGAAGAGATGAGAGAATGCAACAAGC
ATGCATGTGGTTAGCATTTCTTCACTACTCTTACCCTCATTTTTTTAATA
GAGACCTCGAGCTCGAATTTGATACTGTCAAATTGGTCATCGCCAAAGAT
GAGTTATTCAGTTATTCAGAATCTGTTCTATCCAAATCTTTTTGACACCC
TTTGTTAATTTTATGTGGTGAATTCGAATCACAAGTCAGTGAAAACAACA
CTTTATACGTACAGATATGTTTAATACGAAATGGGCTAGGAAAAGTAATA
AATAAACAACCTAGAATGTTTTTTGAATTCAAACTAATATTTCTTATTTa
gaagaagagaaagaagaattTCGACCAATCAACGGAAAATTTAGGGAATG
GTCAAACTGGTCTCCATGCGTTTGTGGAAATACAGCTCCTTCAATTAGAA
CAAGAAAATGTGACAATCCAAAACCTCAAAATTCTGGCAGAAATTGTGTC
GGTGAACCTTTCCAAATGAGACCATGCTTCAAGATGAACTGCTGGTAAGA
AGAGCTCGGTTATTTTTTTCGCTATAGAAGAttcaagtttttaattttta
gacgTCGTCACAAAATGATGCAGAATTGAAGGTTTTTTTTGCTAATATGT
AAATTTAAATAGCCTGTCACTAAACTCGACCTTGTTACCCTTGAGTTTGT
ATTGAGGAATCAATTACAGAGACAAGTTTTGGAATTTATGTGAAATATTt
gctcttttcttttttctagagAGCCAAGAGATGTAACCAAAGGAAAGTAA
GAAGATGAATTTTTCGTATTTTGATTAAAATCAATCCATTTGTAAATTTA
TTCGTTAATTAGAACAATATCGTTCAACAAACTAAAAATTTCAGGCTTAT
TTTCATGGTTCCCTATAACCATTTAAACTAGCACCACTATTTTTACAACA
AACCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042126XLOC_042126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067440-exon-scaffold_47-1491911889:143887..144728TCONS_00067440-exon-scaffold_47-1491911889:143887..144728Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1510915933:143887..144728TCONS_00067440-exon-scaffold_47-1510915933:143887..144728Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1575043694:143887..144728TCONS_00067440-exon-scaffold_47-1575043694:143887..144728Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1491911889:145184..145361TCONS_00067440-exon-scaffold_47-1491911889:145184..145361Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1510915933:145184..145361TCONS_00067440-exon-scaffold_47-1510915933:145184..145361Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1575043694:145184..145361TCONS_00067440-exon-scaffold_47-1575043694:145184..145361Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1491911889:145619..145893TCONS_00067440-exon-scaffold_47-1491911889:145619..145893Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1510915933:145619..145893TCONS_00067440-exon-scaffold_47-1510915933:145619..145893Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1575043694:145619..145893TCONS_00067440-exon-scaffold_47-1575043694:145619..145893Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1491911889:146601..146795TCONS_00067440-exon-scaffold_47-1491911889:146601..146795Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1510915933:146601..146795TCONS_00067440-exon-scaffold_47-1510915933:146601..146795Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1575043694:146601..146795TCONS_00067440-exon-scaffold_47-1575043694:146601..146795Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1491911889:147088..147280TCONS_00067440-exon-scaffold_47-1491911889:147088..147280Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1510915933:147088..147280TCONS_00067440-exon-scaffold_47-1510915933:147088..147280Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1575043694:147088..147280TCONS_00067440-exon-scaffold_47-1575043694:147088..147280Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1491911889:147506..147694TCONS_00067440-exon-scaffold_47-1491911889:147506..147694Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1510915933:147506..147694TCONS_00067440-exon-scaffold_47-1510915933:147506..147694Clytia hemisphaericaexon
TCONS_00067440-exon-scaffold_47-1575043694:147506..147694TCONS_00067440-exon-scaffold_47-1575043694:147506..147694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:143887..147694 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138527	0.13524	0.104632	0.118159	0.300237	0.112774	0	0.0727467	0.268174	0.0498787	0	0.308781	0.302884	0.112112	0.0517662	0	0	0.205273	0	0.838343	0.765406	0.661845	1.07599	2.11484	0.349856	0.845269	0	0	0	0.0816394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top