TCONS_00067478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067478
Unique NameTCONS_00067478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067478 ID=TCONS_00067478|Name=TCONS_00067478|organism=Clytia hemisphaerica|type=transcript|length=1847bp
gatatagataaaaaaacACATAGGTCGAATTGTGTAGGTTGTCAAAGTCC
TAGTTATGCAATGAAAtagtaaatattaaatattagggAGAAAAACTACT
TAtatgataatattttaatatattcaTAGGAGATCAAACTGAGAAGAAAA
TTCGAATTTAGAATAGACTAGACGTAACAGTGCAACATCGAAttaacatc
aaaactaaaaccATTCGGTTAAATTAGAGTTGTGTGTATAGGAATATATA
TGATCTTATCTCATATTTTTTTTAGGTAATGAAATAAGGATCCTTAGTAA
ACCATCACTTGTGAAAAAATCAAGTCTTTTGGTTGGTTGTAACTATACCA
CAGCTCGAGATATCCTCCTTTCATCAGAAAACACTTACTGGCTATTCAAC
CAGACTGTAAATTTGAGTGCAACTGGGACTGGTTATCCTGTACCAAACAC
AGATCCTACCATCTATTCCACGCCTTCTTTGATTGTGGATGATGACAAAT
GGATTGGGACATTTTCTTGTGTCATTGAGATTGGTTCAGAAAATGTTGTT
TCACCATTGATTGTCATCCAAGATGAAGCCAAAGaccCTGATCCATTTTT
CTCATCCAAACCAAGCATCACTTATCCATCGGTCAGCAACCCTTCACTCA
CTGTTTCCAACTGTCAATTCCGGTATGAGGGCCAACCTGCATTCACATAC
ACATTCGTTCTGTACAATACTGACAATACCATCATCAAAGAGACACCGGC
CACTATACGAGAATTAGGAAATGACAATTTCATCTTCGATTCATTGGTGG
TCACCAGTTACCAAAATGCTGCAAGTTATTATCAATGTCGTATCTCAGCA
GAATCTTTGGTGGAGCCAATAGTCTCGTTGATGTCAGATTTCATTGATGT
GAAACTACCTGAATTCACCAGCTATCCAACATCTTCTGGTGGTCGACAGT
TTTATGTCGGTGATTTGATCTTCATCAGTGGTTGTCAAGTCCAATCAATG
TTCACACAGCCCTTATCCTTCTTTGTGCTCTACGATCCACTATCTTCATC
TAACCTTCAACCTATCCAGCAGATGATCACATCCAATTCTTTCAATGAGA
CAACTGgtctcttcactttcactttcaacgAGTACGTCATTGCTTCGGGA
AAGATGAGCAATACAGGTTTCTATGCGTGTCAAGTCTCCTTCGTTACAGC
TCAATCACCAGAGAGTTTGATGACCATTAGATCTGAGTCCATTGATATGA
TTATCTCATCTAATAATGTCGTATTCGCTTCAAACCCTACATTGGTTATC
CGACCCGATTCGGTCAGCATTGCTGGTTGTTCATACACTGCTGACAGACC
TGGCAACCTCACCAAATATTCAAGGTGGTTGTATAATGGTTTAGTATCGA
ACAGTTTAGATACTGGAAACCTCTCTGGCAAGTTTAAGGACATCGACATC
ACTTCATATGTTTCGTGGGGAAATTACATGTGCCAAGTCAAAATTGGTAC
TGAGATTTTTAACTCATCGACATTGACCGTGGACGAATTCCCAGATCCAA
CCATAACAATCCAGCCAACTGCAAAATACAACGATTCCATTGGAAGTCCT
ATTAACATCACCGGTTGTCGTATTTCCAGCATCTTACAAATGCCAAGCAA
TAATTTATACTGGTTGGTCAACTCCATTGAAATACGAAcagcttttcttt
cttttgataagAACAATGCTCAATTTGCGTCTTTGGCAATGGCTTCATCC
ACCATCAACGATCAAGGTTTTTACCAATGCGCTTTCTTGAAACCTGGCAA
AGCTAAAAAGTTGGTTCTATCCAACAGTGCTAATGTCCAGTTTAAAG
Run BLAST on NCBI

protein sequence of TCONS_00067478-protein

>TCONS_00067478-protein ID=TCONS_00067478-protein|Name=TCONS_00067478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MSDFIDVKLPEFTSYPTSSGGRQFYVGDLIFISGCQVQSMFTQPLSFFVL
YDPLSSSNLQPIQQMITSNSFNETTGLFTFTFNEYVIASGKMSNTGFYAC
QVSFVTAQSPESLMTIRSESIDMIISSNNVVFASNPTLVIRPDSVSIAGC
SYTADRPGNLTKYSRWLYNGLVSNSLDTGNLSGKFKDIDITSYVSWGNYM
CQVKIGTEIFNSSTLTVDEFPDPTITIQPTAKYNDSIGSPINITGCRISS
ILQMPSNNLYWLVNSIEIRTAFLSFDKNNAQFASLAMASSTINDQGFYQC
AFLKPGKAKKLVLSNSANVQFK
Run BLAST on NCBI

transcript from alignment at scaffold_47:256723..259382-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067478 ID=TCONS_00067478|Name=TCONS_00067478|organism=Clytia hemisphaerica|type=transcript|length=2660bp|location=Sequence derived from alignment at scaffold_47:256723..259382- (Clytia hemisphaerica)
GATATAGATAAAAAAACACATAGGTCGAATTGTGTAGGTTGTCAAAGTCC
TAGTTATGCAATGAAATAGTAAATATTAAATATTAGGGAGAAAAACTACT
TATATGATAATATTTTAATATATTCATAGGAGATCAAACTGAGAAGAAAA
TTCGAATTTAGAATAGACTAGACGTAACAGTGCAACATCGAATTAACATC
AAAACTAAAACCATTCGGTTAAATTAGAGTTGTGTGTATAGGAATATATA
TGATCTTATCTCATATTTTTTTTAGGTAATGAAATAAGGATCCTTAGTAA
ACCATCACTTGTGAAAAAATCAAGTCTTTTGGTTGGTTGTAACTATACCA
CAGCTCGAGATATCCTCCTTTCATCAGAAAACACTTACTGGCTATTCAAC
CAGACTGTAAATTTGAGTGCAACTGGGACTGGTTATCCTGTACCAAACAC
AGATCCTACCATCTATTCCACGCCTTCTTTGATTGTGGATGATGACAAAT
GGATTGGGACATTTTCTTGTGTCATTGAGATTGGTTCAGAAAATGTTGTT
TCACCATTGATTGTCATCCAAGATGAAGCCAAAGGTATGAATTAGGTTTG
CAGTTTTTTGATTTGTTTAAAAGTTTAAAACTTAGTACGATCGTTGAAAA
ATCTTATTCTATCGAAATCTCAAATTTACTTTTTTAGACCCTGATCCATT
TTTCTCATCCAAACCAAGCATCACTTATCCATCGGTCAGCAACCCTTCAC
TCACTGTTTCCAACTGTCAATTCCGGTATGAGGGCCAACCTGCATTCACA
TACACATTCGTTCTGTACAATACTGACAATACCATCATCAAAGAGACACC
GGCCACTATACGAGAATTAGGAAATGACAATTTCATCTTCGATTCATTGG
TGGTCACCAGTTACCAAAATGCTGCAAGTTATTATCAATGTCGTATCTCA
GCAGAATCTTTGGTGGAGCCAATAGTCTCGTTGATGTCAGATTTCATTGA
TGTGAAACGTAAGTATTTGAAATTTAATAAGTGGAATCAAAACTTTTCAA
AAGTGTTTCCAGTTGATTCCACAAAGCTTGGTAATGATACCGTATTCCTC
TAAATAAGGCTGCCATTTTTATCATTTCCATTTCATTTCCAGTACCTGAA
TTCACCAGCTATCCAACATCTTCTGGTGGTCGACAGTTTTATGTCGGTGA
TTTGATCTTCATCAGTGGTTGTCAAGTCCAATCAATGTTCACACAGCCCT
TATCCTTCTTTGTGCTCTACGATCCACTATCTTCATCTAACCTTCAACCT
ATCCAGCAGATGATCACATCCAATTCTTTCAATGAGACAACTGGTCTCTT
CACTTTCACTTTCAACGAGTACGTCATTGCTTCGGGAAAGATGAGCAATA
CAGGTTTCTATGCGTGTCAAGTCTCCTTCGTTACAGCTCAATCACCAGAG
AGTTTGATGACCATTAGATCTGAGTCCATTGATATGATTATCTCATGTAA
GTGATTATAGTTTCTATTTATTTCGTCTTTTGCTTTCATTTTCATCGGAA
TTTTACTAATGTTCCATATCCTGAAAATAAAGCAATCGTACACCATATCA
ACCGAACAATGAGGTTTGGGTATGAGTTTACCGAGGGTTAAATTGGCGTC
AATTGTTTTGTTATGTTAGTGTTCAGTTTCCTCACTCAATCATAATAATG
TTAAACTTAACTTTTAATGTAGCTTTTGACGCAAGGGGTGACAGGTGCAT
TGTATTGTATTTTATGATTCATTTCTCTAAATCCGATTTTTAACATTCAT
TCTTGTTTAGCTAATAATGTCGTATTCGCTTCAAACCCTACATTGGTTAT
CCGACCCGATTCGGTCAGCATTGCTGGTTGTTCATACACTGCTGACAGAC
CTGGCAACCTCACCAAATATTCAAGGTGGTTGTATAATGGTTTAGTATCG
AACAGTTTAGATACTGGAAACCTCTCTGGCAAGTTTAAGGACATCGACAT
CACTTCATATGTTTCGTGGGGAAATTACATGTGCCAAGTCAAAATTGGTA
CTGAGATTTTTAACTCATCGACATTGACCGTGGACGAATTCCCAGGTAAT
GACGTTTTTTTTTTTTTTTTATCTATATAAAACTATTTTCGTCTTCGTGA
TTTTGAAAAAATTATTAAGCTTCAGCATTGTCTATCGATAGAATAAACAT
GATTTTGTTTTGTGTGTAAAATCTTTTAACGGGAGTAATTGAAGTTATTT
CCCATTAAGAATCAAAAAAATGTTATTTGTGTAGAAGCTCCAAAATAAGA
CTTCTGTCATGTTATAGATATGAGACCTGTACATTAATTATGTTTTCCAT
CACGCAGATCCAACCATAACAATCCAGCCAACTGCAAAATACAACGATTC
CATTGGAAGTCCTATTAACATCACCGGTTGTCGTATTTCCAGCATCTTAC
AAATGCCAAGCAATAATTTATACTGGTTGGTCAACTCCATTGAAATACGA
ACAGCTTTTCTTTCTTTTGATAAGAACAATGCTCAATTTGCGTCTTTGGC
AATGGCTTCATCCACCATCAACGATCAAGGTTTTTACCAATGCGCTTTCT
TGAAACCTGGCAAAGCTAAAAAGTTGGTTCTATCCAACAGTGCTAATGTC
CAGTTTAAAG

Coding sequence (CDS) from alignment at scaffold_47:256723..259382-

>TCONS_00067478 ID=TCONS_00067478|Name=TCONS_00067478|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_47:256723..259382- (Clytia hemisphaerica)
ATGTCAGATTTCATTGATGTGAAACTACCTGAATTCACCAGCTATCCAAC
ATCTTCTGGTGGTCGACAGTTTTATGTCGGTGATTTGATCTTCATCAGTG
GTTGTCAAGTCCAATCAATGTTCACACAGCCCTTATCCTTCTTTGTGCTC
TACGATCCACTATCTTCATCTAACCTTCAACCTATCCAGCAGATGATCAC
ATCCAATTCTTTCAATGAGACAACTGGTCTCTTCACTTTCACTTTCAACG
AGTACGTCATTGCTTCGGGAAAGATGAGCAATACAGGTTTCTATGCGTGT
CAAGTCTCCTTCGTTACAGCTCAATCACCAGAGAGTTTGATGACCATTAG
ATCTGAGTCCATTGATATGATTATCTCATCTAATAATGTCGTATTCGCTT
CAAACCCTACATTGGTTATCCGACCCGATTCGGTCAGCATTGCTGGTTGT
TCATACACTGCTGACAGACCTGGCAACCTCACCAAATATTCAAGGTGGTT
GTATAATGGTTTAGTATCGAACAGTTTAGATACTGGAAACCTCTCTGGCA
AGTTTAAGGACATCGACATCACTTCATATGTTTCGTGGGGAAATTACATG
TGCCAAGTCAAAATTGGTACTGAGATTTTTAACTCATCGACATTGACCGT
GGACGAATTCCCAGATCCAACCATAACAATCCAGCCAACTGCAAAATACA
ACGATTCCATTGGAAGTCCTATTAACATCACCGGTTGTCGTATTTCCAGC
ATCTTACAAATGCCAAGCAATAATTTATACTGGTTGGTCAACTCCATTGA
AATACGAACAGCTTTTCTTTCTTTTGATAAGAACAATGCTCAATTTGCGT
CTTTGGCAATGGCTTCATCCACCATCAACGATCAAGGTTTTTACCAATGC
GCTTTCTTGAAACCTGGCAAAGCTAAAAAGTTGGTTCTATCCAACAGTGC
TAATGTCCAGTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042142XLOC_042142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067478-exon-scaffold_47-1575043694:258799..259382TCONS_00067478-exon-scaffold_47-1575043694:258799..259382Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1575043694:258375..258695TCONS_00067478-exon-scaffold_47-1575043694:258375..258695Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1575043694:257887..258240TCONS_00067478-exon-scaffold_47-1575043694:257887..258240Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1575043694:257288..257572TCONS_00067478-exon-scaffold_47-1575043694:257288..257572Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1575043694:256723..257025TCONS_00067478-exon-scaffold_47-1575043694:256723..257025Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1510915933:258799..259382TCONS_00067478-exon-scaffold_47-1510915933:258799..259382Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1510915933:258375..258695TCONS_00067478-exon-scaffold_47-1510915933:258375..258695Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1510915933:257887..258240TCONS_00067478-exon-scaffold_47-1510915933:257887..258240Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1510915933:257288..257572TCONS_00067478-exon-scaffold_47-1510915933:257288..257572Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1510915933:256723..257025TCONS_00067478-exon-scaffold_47-1510915933:256723..257025Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1491911889:258799..259382TCONS_00067478-exon-scaffold_47-1491911889:258799..259382Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1491911889:258375..258695TCONS_00067478-exon-scaffold_47-1491911889:258375..258695Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1491911889:257887..258240TCONS_00067478-exon-scaffold_47-1491911889:257887..258240Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1491911889:257288..257572TCONS_00067478-exon-scaffold_47-1491911889:257288..257572Clytia hemisphaericaexon
TCONS_00067478-exon-scaffold_47-1491911889:256723..257025TCONS_00067478-exon-scaffold_47-1491911889:256723..257025Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067478-proteinTCONS_00067478-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:256723..259382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51614	1.30951	1.23626	0.867432	0.503453	0.161567	0.445541	0.469249	0.328532	0.502486	0.263324	0.173099	1.13714	1.49596	0.801757	1.13507	2.78037	3.07624	6.22392	7.85813	3.86305	3.08108	2.96309	3.62088	11.0398	12.8071	13.5722	17.5993	6.77331	6.23909
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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