TCONS_00067482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067482
Unique NameTCONS_00067482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067482 ID=TCONS_00067482|Name=TCONS_00067482|organism=Clytia hemisphaerica|type=transcript|length=1776bp
TCCTGACAACACCAACCACCAGCAATCTTGGTCAAACTGGTGTAAGGTTG
GATGGATGTGATTTCAAATTCCATCAGTCCTTTCCTGGAAAAGCTTCATT
CTTGGTTTACGATGCAAACAAAAACCTATTAAACGAGATTCCAGCCACAT
TCAGTGCATTAACAACCAGCGATATTTACACTTTCGATTCTGTCACAATC
AACAGTTATGATTCTACAGGAACCTATTTTCGTTGTCAACTCTCACCCAA
TGAAAATGCCTTTGAAGAAGAAGTCGTGGGTGATTATTCGATGCAAACCA
ACATCACTGCACCACGTTTTACCCAACGACCTACTTTCGAGAAGTCGTCT
TACTTTGTCGGTGAAAACATAAGAATTAATGGATGTGTATTCACTGCAAG
GTTTCTGAACAATGTCAATGTAACCCTTTGGAAAGGTGTTGATCGAGTAT
CAACCTACACCGAAACTGACATGACTATCGTTTGGCAAGATGACCTTTTC
AAAGTGGTTGTTAAAGATCAGATGATTGAAGCAAGGTTGAATAGCTCTGG
GGTCTATCATTGTCAAATTCATTACATGGTGGGGCAAACTCTTTCGACGA
TACGATCTGATACTTCGGTTTTGAATGTCAAAAGTAACAATGTGGTCTTC
CAAACGAGACCAACATTGAAGAGAACAACGGACGAGATATTGGTCAGTGG
TTGTATTTACACGTCATCAAGAAATCAAAACCTGGTCGCCTtctctttca
ttgaatattctTATACCGGTGTTACCAATAGTATTCTTCAAAAGCTGACA
TCATTGACCAATGAAACTGGTGCAGTAACAATATCAAATGGATTTTTCAG
TCTACCCCCTGTCTCAATCAACAAGAGCTATAGTGACGCTAGAATCAACT
GCGTGATCAAAATCGGGGAAGAAATTTTCTCATCGAATACTTCAAATATT
TACAGCAGCCCAAgtTTCGAAACCGTTCCGAATGTTTCAACCTTCAATAA
AAGTGGATTGACAATTTCTGGCTGTAAATACTTTTTCCATCAAAAAGTCG
AAGTCTCCATCGTTGTGATGGATGAAAACAAAGATATCCTTGTGGAAATA
GATACTCTATCCGATCATCTTGCTGGGGATAGCCTTACGATGGATCCCAT
CATAATTGATTCCTATGAAAATGCTGGGTTTTATTACAAATGTAAAGCTG
TCGATCCAAGTCGCCCCACAGAGCAAGCCTTTTCTGATTCCTCGACTGTC
TTCAACTTAACTTATCCATATTTCACAAATCCATTGTCATTCGACAGAGA
TTTCTATTTCATTGGTGAAAGGACGGCTGCCAACCCTTGCAGATTCAAAT
CCATGTTCATCAAAGGATTGAACTTCTCATCCTTACATCTGGAAACTGGT
CTCTCCAATAAACTACCTTTGTCCAACTCTTGGCAAAACGATAGCTTCTA
CAATATCACTTATCCTAAAGCTGAATTTGAAGCGGCTATGTTCTATCATG
GCAATTATACATGCAGAGTTGATTACATGGTTGGGAACAGAACATTAACG
TCTGAATCGGATGTTTCAATCTTCGTCGTTAAAAGTAGCGAAGTCCAGTT
TTTATCGAGACCATCGCTTGAAAGAACCTCCAGTAATGTCATCATCAAAA
ATTGTACCTACACATCAGCTCGCAACCAAGACTTAGCGCAATATGCATCA
ATCCGTATCAACAACGACACATTTGGTATAGATTTAACAACATCTGTAGG
CCTCCTTGGCGTGGCAGTGCAAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00067482-protein

>TCONS_00067482-protein ID=TCONS_00067482-protein|Name=TCONS_00067482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
LTTPTTSNLGQTGVRLDGCDFKFHQSFPGKASFLVYDANKNLLNEIPATF
SALTTSDIYTFDSVTINSYDSTGTYFRCQLSPNENAFEEEVVGDYSMQTN
ITAPRFTQRPTFEKSSYFVGENIRINGCVFTARFLNNVNVTLWKGVDRVS
TYTETDMTIVWQDDLFKVVVKDQMIEARLNSSGVYHCQIHYMVGQTLSTI
RSDTSVLNVKSNNVVFQTRPTLKRTTDEILVSGCIYTSSRNQNLVAFSFI
EYSYTGVTNSILQKLTSLTNETGAVTISNGFFSLPPVSINKSYSDARINC
VIKIGEEIFSSNTSNIYSSPSFETVPNVSTFNKSGLTISGCKYFFHQKVE
VSIVVMDENKDILVEIDTLSDHLAGDSLTMDPIIIDSYENAGFYYKCKAV
DPSRPTEQAFSDSSTVFNLTYPYFTNPLSFDRDFYFIGERTAANPCRFKS
MFIKGLNFSSLHLETGLSNKLPLSNSWQNDSFYNITYPKAEFEAAMFYHG
NYTCRVDYMVGNRTLTSESDVSIFVVKSSEVQFLSRPSLERTSSNVIIKN
CTYTSARNQDLAQYASIRINNDTFGIDLTTSVGLLGVAVQG
Run BLAST on NCBI

transcript from alignment at scaffold_47:285011..288828-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067482 ID=TCONS_00067482|Name=TCONS_00067482|organism=Clytia hemisphaerica|type=transcript|length=3818bp|location=Sequence derived from alignment at scaffold_47:285011..288828- (Clytia hemisphaerica)
TCCTGACAACACCAACCACCAGCAATCTTGGTCAAACTGGTGTAAGGTTG
GATGGATGTGATTTCAAATTCCATCAGTCCTTTCCTGGAAAAGCTTCATT
CTTGGTTTACGATGCAAACAAAAACCTATTAAACGAGATTCCAGCCACAT
TCAGTGCATTAACAACCAGCGATATTTACACTTTCGATTCTGTCACAATC
AACAGTTATGATTCTACAGGAACCTATTTTCGTTGTCAACTCTCACCCAA
TGAAAATGCCTTTGAAGAAGAAGTCGTGGGTGATTATTCGATGCAAACCA
ACATCACTGGTAAGACATACATATTTATTTTCCTTGATCACGTGGGTTAT
TCCTGGGTGTGGCTTCAAAGCACTTCTTTGAGCGTTGTGTTGTGGATGTC
GCACAGAATATCGTTTAATCTATTGTATGACCTCGCTTAACAATAACATC
CAATCACAACATATCAATAGCCATTATATCAAATAAAAACAGCAAAAAGT
TTCAAGCGGTTGCCTGTTTTTAAAACTTCCAGATTTCTAGTTCTTTTTTT
ACTAACACGATTTCGGTTGTAGAAATTACGATAAATAGACGCGTACTATA
TATACTTTTCAGCGTATGCTTGCGAGCATGGAACTGGACATACGCTGACG
TGTCTGGTGTCCCAATTTATCAATATCGTGTATGCAATGTACGGTAGACT
TGAAAGAGATATATGCAATACGGCCAATGTGCCTGTAGGGGGCTGTGTAG
CCTTGAATTCCCTACAAAGTGCTCAAACATTTATGAGTAATAACTGTGGG
GTTGAACCTTCAAGTTGCCATATCACTGCTCATAATAATATATTTGGTGA
CCCTTGCGTTGGAACTGTTAAATACTTGAAGTTGATTTATCAATGTTTAC
CCAGAGTGAGTTGTAAGTAAAGCCTTCTGTCAGCATTCGTTCATCATGGT
GGGCTTACCGTAACAAAATTCTCGTTGAGGATTTCGTTTCACCGTCGGTT
CAGTTTTCTGTAGATTAAGTTAAAAGGTTGACATGTGCAAATTATAGAAT
TCCTTACACCACAGCCCCTTAAACATATTCGTAAAGTTTCAATAAATAAA
AAATGAAATTCGACTCTGGCCTATAATGATCGTGAATAATGATTCTTTCA
GAGCTTCATTCATTGCAGTCTCGTAAAATTACGGGGAGCAGATATTACCT
ACAAAGCAAAGGTGCCCGCAGTTTTGAAATGCTGTCTTACGTTTTTAAAG
GAAAAAGTTTTCTCTGATCAAATCGAAGGAATTAATACTTTTGATTATAA
CAACCTCAGTAGAAATATAAATTTTTCCAAATGAAAGCCCATCATTGCAC
AGGTGAAAATGTAAGCACTTCAATTCTCCAACAAATGGTTTCATTGTTTA
TTGAGAACAATTTTTGTATCTTAACTGATTGGCAGTTGCTTTTATTTGAT
TTGCCCTATTTATCGATTTGTACAACATTATTACCATATACCATACATAT
CGTGCATGGAGACAACTTGTAATCCTCTTTTTGTTACAGCACCACGTTTT
ACCCAACGACCTACTTTCGAGAAGTCGTCTTACTTTGTCGGTGAAAACAT
AAGAATTAATGGATGTGTATTCACTGCAAGGTTTCTGAACAATGTCAATG
TAACCCTTTGGAAAGGTGTTGATCGAGTATCAACCTACACCGAAACTGAC
ATGACTATCGTTTGGCAAGATGACCTTTTCAAAGTGGTTGTTAAAGATCA
GATGATTGAAGCAAGGTTGAATAGCTCTGGGGTCTATCATTGTCAAATTC
ATTACATGGTGGGGCAAACTCTTTCGACGATACGATCTGATACTTCGGTT
TTGAATGTCAAAAGTAAGTCTGTCAAGTCAAGTTCTTTTAAAACCTCGAG
AGGCTGAATTGCTTAAAATTTCGATTCTTTAGAATTTTAAGAAAGAATGA
TTCTTTTCTCTAATAACTTATCTAGTGATTATTATGTTCACTTTTATTCA
AGGTAACAATGTGGTCTTCCAAACGAGACCAACATTGAAGAGAACAACGG
ACGAGATATTGGTCAGTGGTTGTATTTACACGTCATCAAGAAATCAAAAC
CTGGTCGCCTTCTCTTTCATTGAATATTCTTATACCGGTGTTACCAATAG
TATTCTTCAAAAGCTGACATCATTGACCAATGAAACTGGTGCAGTAACAA
TATCAAATGGATTTTTCAGTCTACCCCCTGTCTCAATCAACAAGAGCTAT
AGTGACGCTAGAATCAACTGCGTGATCAAAATCGGGGAAGAAATTTTCTC
ATCGAATACTTCAAATATTTACAGCAGCCCAAGTAAATTTATTTTCTCGA
AACCCAATCTTTATTTGCCTGTTTTCGTACCTCTCAGCTCGGACTCATTA
AAATATTTCTTTTTATTACCTTGTAATGTCCTTACCTAAGTAGCAAATAA
TATACTGGGAAATCCTGATCAACTATTTTTCTTTTTATAGGTTTCGAAAC
CGTTCCGAATGTTTCAACCTTCAATAAAAGTGGATTGACAATTTCTGGCT
GTAAATACTTTTTCCATCAAAAAGTCGAAGTCTCCATCGTTGTGATGGAT
GAAAACAAAGATATCCTTGTGGAAATAGATACTCTATCCGATCATCTTGC
TGGGGATAGCCTTACGATGGATCCCATCATAATTGATTCCTATGAAAATG
CTGGGTTTTATTACAAATGTAAAGCTGTCGATCCAAGTCGCCCCACAGAG
CAAGCCTTTTCTGATTCCTCGACTGTCTTCAACTTAACTTGTAAGTTCTA
TATATAAAATGTCTTCACAACTAAGGAGGAGTTGTGGATTGTTATACTTC
TCGCCTCTCCTTGGGTTCAGGCACAAACACACCTTTTGTGGTTATTTATT
GGTGGTACTAAGCTTGACAATAAAGTGTGAAATGTCGTGTGTGAAAAAAT
CTGGACTATATTTAATCTAATAAAAGTCTTCCACCCTATTAATTCTATAG
TATTCTAAAGTTTTTGAAAAATCTATTGGATTTTACAAATTATATCTTTC
AGATCCATATTTCACAAATCCATTGTCATTCGACAGAGATTTCTATTTCA
TTGGTGAAAGGACGGCTGCCAACCCTTGCAGATTCAAATCCATGTTCATC
AAAGGATTGAACTTCTCATCCTTACATCTGGAAACTGGTCTCTCCAATAA
ACTACCTTTGTCCAACTCTTGGCAAAACGATAGCTTCTACAATATCACTT
ATCCTAAAGCTGAATTTGAAGCGGCTATGTTCTATCATGGCAATTATACA
TGCAGAGTTGATTACATGGTTGGGAACAGAACATTAACGTCTGAATCGGA
TGTTTCAATCTTCGTCGTTAAAAGTAAGAACAGCAATTTTCATATAGCGG
ATATTATGATTATCGCGTCACATTTTTATCGGAACAGTCTATTCCTAACA
GTCTATTCCTAAATTTGTCGTTCTTTTTGTCTATTTTTTGTAAATTCTTA
AGATCAACTCCCTCAAAAAAGAGAAAATTTTAACAATAGTTTGTAAGTTA
TTGAGTATTATTCATATATAAGTAGTCTTGCATTTCGTTAGTCTCAATTT
TCTTAATTCTAAATCTTATCCCTCAGGTAGCGAAGTCCAGTTTTTATCGA
GACCATCGCTTGAAAGAACCTCCAGTAATGTCATCATCAAAAATTGTACC
TACACATCAGCTCGCAACCAAGACTTAGCGCAATATGCATCAATCCGTAT
CAACAACGACACATTTGGTATAGATTTAACAACATCTGTAGGCCTCCTTG
GCGTGGCAGTGCAAGGAG

Coding sequence (CDS) from alignment at scaffold_47:285011..288828-

>TCONS_00067482 ID=TCONS_00067482|Name=TCONS_00067482|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_47:285011..288828- (Clytia hemisphaerica)
CTGACAACACCAACCACCAGCAATCTTGGTCAAACTGGTGTAAGGTTGGA
TGGATGTGATTTCAAATTCCATCAGTCCTTTCCTGGAAAAGCTTCATTCT
TGGTTTACGATGCAAACAAAAACCTATTAAACGAGATTCCAGCCACATTC
AGTGCATTAACAACCAGCGATATTTACACTTTCGATTCTGTCACAATCAA
CAGTTATGATTCTACAGGAACCTATTTTCGTTGTCAACTCTCACCCAATG
AAAATGCCTTTGAAGAAGAAGTCGTGGGTGATTATTCGATGCAAACCAAC
ATCACTGCACCACGTTTTACCCAACGACCTACTTTCGAGAAGTCGTCTTA
CTTTGTCGGTGAAAACATAAGAATTAATGGATGTGTATTCACTGCAAGGT
TTCTGAACAATGTCAATGTAACCCTTTGGAAAGGTGTTGATCGAGTATCA
ACCTACACCGAAACTGACATGACTATCGTTTGGCAAGATGACCTTTTCAA
AGTGGTTGTTAAAGATCAGATGATTGAAGCAAGGTTGAATAGCTCTGGGG
TCTATCATTGTCAAATTCATTACATGGTGGGGCAAACTCTTTCGACGATA
CGATCTGATACTTCGGTTTTGAATGTCAAAAGTAACAATGTGGTCTTCCA
AACGAGACCAACATTGAAGAGAACAACGGACGAGATATTGGTCAGTGGTT
GTATTTACACGTCATCAAGAAATCAAAACCTGGTCGCCTTCTCTTTCATT
GAATATTCTTATACCGGTGTTACCAATAGTATTCTTCAAAAGCTGACATC
ATTGACCAATGAAACTGGTGCAGTAACAATATCAAATGGATTTTTCAGTC
TACCCCCTGTCTCAATCAACAAGAGCTATAGTGACGCTAGAATCAACTGC
GTGATCAAAATCGGGGAAGAAATTTTCTCATCGAATACTTCAAATATTTA
CAGCAGCCCAAGTTTCGAAACCGTTCCGAATGTTTCAACCTTCAATAAAA
GTGGATTGACAATTTCTGGCTGTAAATACTTTTTCCATCAAAAAGTCGAA
GTCTCCATCGTTGTGATGGATGAAAACAAAGATATCCTTGTGGAAATAGA
TACTCTATCCGATCATCTTGCTGGGGATAGCCTTACGATGGATCCCATCA
TAATTGATTCCTATGAAAATGCTGGGTTTTATTACAAATGTAAAGCTGTC
GATCCAAGTCGCCCCACAGAGCAAGCCTTTTCTGATTCCTCGACTGTCTT
CAACTTAACTTATCCATATTTCACAAATCCATTGTCATTCGACAGAGATT
TCTATTTCATTGGTGAAAGGACGGCTGCCAACCCTTGCAGATTCAAATCC
ATGTTCATCAAAGGATTGAACTTCTCATCCTTACATCTGGAAACTGGTCT
CTCCAATAAACTACCTTTGTCCAACTCTTGGCAAAACGATAGCTTCTACA
ATATCACTTATCCTAAAGCTGAATTTGAAGCGGCTATGTTCTATCATGGC
AATTATACATGCAGAGTTGATTACATGGTTGGGAACAGAACATTAACGTC
TGAATCGGATGTTTCAATCTTCGTCGTTAAAAGTAGCGAAGTCCAGTTTT
TATCGAGACCATCGCTTGAAAGAACCTCCAGTAATGTCATCATCAAAAAT
TGTACCTACACATCAGCTCGCAACCAAGACTTAGCGCAATATGCATCAAT
CCGTATCAACAACGACACATTTGGTATAGATTTAACAACATCTGTAGGCC
TCCTTGGCGTGGCAGTGCAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042145XLOC_042145Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067482-proteinTCONS_00067482-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067482-exon-scaffold_47-1575043694:288520..288828TCONS_00067482-exon-scaffold_47-1575043694:288520..288828Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1575043694:286966..287289TCONS_00067482-exon-scaffold_47-1575043694:286966..287289Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1575043694:286497..286826TCONS_00067482-exon-scaffold_47-1575043694:286497..286826Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1575043694:286039..286338TCONS_00067482-exon-scaffold_47-1575043694:286039..286338Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1575043694:285456..285776TCONS_00067482-exon-scaffold_47-1575043694:285456..285776Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1575043694:285011..285202TCONS_00067482-exon-scaffold_47-1575043694:285011..285202Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1510915933:288520..288828TCONS_00067482-exon-scaffold_47-1510915933:288520..288828Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1510915933:286966..287289TCONS_00067482-exon-scaffold_47-1510915933:286966..287289Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1510915933:286497..286826TCONS_00067482-exon-scaffold_47-1510915933:286497..286826Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1510915933:286039..286338TCONS_00067482-exon-scaffold_47-1510915933:286039..286338Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1510915933:285456..285776TCONS_00067482-exon-scaffold_47-1510915933:285456..285776Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1510915933:285011..285202TCONS_00067482-exon-scaffold_47-1510915933:285011..285202Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1491911889:288520..288828TCONS_00067482-exon-scaffold_47-1491911889:288520..288828Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1491911889:286966..287289TCONS_00067482-exon-scaffold_47-1491911889:286966..287289Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1491911889:286497..286826TCONS_00067482-exon-scaffold_47-1491911889:286497..286826Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1491911889:286039..286338TCONS_00067482-exon-scaffold_47-1491911889:286039..286338Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1491911889:285456..285776TCONS_00067482-exon-scaffold_47-1491911889:285456..285776Clytia hemisphaericaexon
TCONS_00067482-exon-scaffold_47-1491911889:285011..285202TCONS_00067482-exon-scaffold_47-1491911889:285011..285202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:285011..288828 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0452811	0.0883124	0.102539	0.0250796	0	0	0	0.0272506	0	0.0472642	0	0	0	0	0.0128561	0.0137965	0.0339924	0	0	0	0.197012	0.160159	0	0.0944028	0.388931	0.867778	0.434626	0.265054	0.0251292	0.0256027
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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