TCONS_00067484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067484
Unique NameTCONS_00067484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067484 ID=TCONS_00067484|Name=TCONS_00067484|organism=Clytia hemisphaerica|type=transcript|length=2015bp
CCTCACAAGTGTTCACTCACAGGCTGAAAACAATTTCCTAAAACAAGAAT
TTCATAACAGgactGGAAGGCGAATCGCTTGGTATGGTGGAGAGAAAAAG
AATGGTGTATTTATCTGGTCTGATGGAACCagttttacaaaaactttttg
gaaaagtGGCGAACCAAATAACTTAAACGGAAATGAAAATTGTCTTTTAA
CAAATGATGGTGCGTGGAATGATGAGGACTGTTCAGTTACCAAGTACTAC
GTGTGCAAACTTGATTCTGAATTTACTCTGCGATTCCTCACAAAGCCATC
AGTTAGAAAAAGTGAGAGTGGCAACGAGGTAATCATTTCTGGTTGCAGTT
ATTCTTCGTCAACTCATTCCAGTTGGATGGCAAAATCTTTTATTCAAAGA
AACAATGATGACTTGATTGCAATTTTCAATGCAACCCAAGTTACTGATga
aacaaaagatgaaaatgttttcaCTCTACCTTCTGTCAAATTGTCCAATG
TTGAGGGTGGTGATTTCAGTTGTGTGGTTGTTATTGACAACATGACGTTT
TTTTCAAATACAACAAAATTCATTCCTGaGAACCAAGTCACAAGTTTCAA
TGAAGCTCAATATTACTTTAGCATTTCCAAGAAGAATTGGCAGTCTGCAG
AAAATGATTGTATTTACCTTGGAGGTCACCTAACAAGTGTCCACTCTCAG
GCTGAAAATGAGTTTATTAACCAAGAAATCAAGAGGACAACAGGGAATGT
TATTGTTTGGTACGGTggtgaaagaaaaaacaatgtttttgtttggaCTG
ATGGTACAATTTTTACCAAAACTTTCTGGAATACTGGTGAACCAAATAAC
TTGGGTGGAAATGAAAATTGTCTTAACGTATATGCAACTGGAATGTGGAA
TGACATCAGCTGTCATAACTTGTTTTATTACGTATGCAAACTTCGCTCAT
CAGATTTTACATTGCAATTCCTCACAAAGCCATCATTAAGAAGAAGTGAG
AGCAGAAAAGAAACAATTGTTTCTGGCTGCAGTTATTCTTCGTCAACTCA
CTCCAGTTGGATGGCAAAATCttttattcaaagaaataaTGATGACTTGA
TTGCGATTTCTACTGCAGTGCAAGTTACTAATGAAACAAGTCGTGACAAT
GTTTTCACTCTACCTTCTGTTAAATTGTCGTATATTGAACATGGAGATTT
CAGATGCGTGATAATCCATGACAGTATAACGTATTACTCTTTTGCATCCA
AATTGTATAAATCTCCAGATTTTATCGATGTTCCAACATTTGCGAGAGAA
TCACAACATTTGCTGTCTGGATGTAATTTCTTGTATCACGAGGCACCACA
AACTGACAACGTTTTCTTCAATCTCTACAACGATGCAAAACAATTGACAA
ACAGAAGACGCACAACCTTCAAAAACTCCACAATTCCAAACCAGTATCAT
TTCAACCNATGCAAAACAATTGACAAACAGAAGACGCACAACCATCAAAA
ACTCCACAATTCCAAACCAGTATCATTTCAACCAAGTTACAGTTACCAAT
TATACAGATGTGGGAAATTACATTCGATGTCAAATTGATATCGAAACAAA
CACTACCATGTCCAATTTCTCAGATATCATCAATGTTCATTACCCATCAG
TTTTAAACCAACCGACATCAAACTTcacaaattatttcattggtGATCCA
ATTCAAGTTGGTGGTTGCGCATTTAAGTCCATGTTTCATCAAGGTGTCCA
AGGTTACTGGTTAAAAAATGGTGCCGTGTACACTGAAAACGTAACCTTGG
TGTACGAGATAGCAACAGATGGACTCCTAGTGTTGAAACTACTTGACCTT
ATCATTGACGAGGCATCTGAAAGTGCTAATTATTCTTGCCAACTTGATGT
TATAGTCAACGGGGATGGTGGTATCAGAACTGCTCGCTCAAATATAGTGC
AAACAACTGTCTTCAGTAACGGAGTACGATTCTTAACAAAACCTACAATC
AAGAGAACATCGAAC
Run BLAST on NCBI

protein sequence of TCONS_00067484-protein

>TCONS_00067484-protein ID=TCONS_00067484-protein|Name=TCONS_00067484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp
LTSVHSQAENNFLKQEFHNRTGRRIAWYGGEKKNGVFIWSDGTSFTKTFW
KSGEPNNLNGNENCLLTNDGAWNDEDCSVTKYYVCKLDSEFTLRFLTKPS
VRKSESGNEVIISGCSYSSSTHSSWMAKSFIQRNNDDLIAIFNATQVTDE
TKDENVFTLPSVKLSNVEGGDFSCVVVIDNMTFFSNTTKFIPENQVTSFN
EAQYYFSISKKNWQSAENDCIYLGGHLTSVHSQAENEFINQEIKRTTGNV
IVWYGGERKNNVFVWTDGTIFTKTFWNTGEPNNLGGNENCLNVYATGMWN
DISCHNLFYYVCKLRSSDFTLQFLTKPSLRRSESRKETIVSGCSYSSSTH
SSWMAKSFIQRNNDDLIAISTAVQVTNETSRDNVFTLPSVKLSYIEHGDF
RCVIIHDSITYYSFASKLYKSPDFIDVPTFARESQHLLSGCNFLYHEAPQ
TDNVFFNLYNDAKQLTNRRRTTFKNSTIPNQYHFNXCKTIDKQKTHNHQK
LHNSKPVSFQPSYSYQLYRCGKLHSMSN
Run BLAST on NCBI

transcript from alignment at scaffold_47:289378..297955-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067484 ID=TCONS_00067484|Name=TCONS_00067484|organism=Clytia hemisphaerica|type=transcript|length=8578bp|location=Sequence derived from alignment at scaffold_47:289378..297955- (Clytia hemisphaerica)
CCTCACAAGTGTTCACTCACAGGCTGAAAACAATTTCCTAAAACAAGAAT
TTCATAACAGGTTTATTATATTTTCTTGGAAATGTTGAATTATTTCAGGC
GTTTGCTTTTCCCGGGCCATAATATTATATAATCGAAACAATCAAACTTG
ATCAAATGGTTAAAGTTTAATTTTAATGAATCAAAATTTTCCGAAAGACT
TATTACTAAAGACTAATTAGGCCTAGAATTAGTCAAACTTTAATTGAACT
GATATATTTGTCCAACTTATCAACCAGATGATTAATTGTAATTTGTCAAT
CTTGAAACAAATAATCAAACAATTCAACCAATTTTTTTTTACAATTTCAA
AAAAAAGTTCAATTAATCAACAAAATTGAGCTTTTGTCTTTTAATCAAGT
CTGATAGAGCAGATTTAAATGTGGCCTAGTTTTCCATAACTGCTGATTTT
AATTTTTGATTTTACCACAGCTCTTTCATTCAATCAGGCAGATTACAAAG
ATGGCATTCAATAGATCTTTTCTCAAGTAATCAGATGAGAACTGGAGAAA
AAATAACTGTTTTATTCCCACACTGCGCCGAAAAAATTTGAAAAACTCAA
TCTCCCAAAAATACTTGAAAGGTTTTTTTACCGTTCTTACTTTGACAGAG
TTAATTAATATATTAAATAAGTTTTTTTTTCAGGACTGGAAGGCGAATCG
CTTGGTATGGTGGAGAGAAAAAGAATGGTGTATTTATCTGGTCTGATGGA
ACCAGTTTTACAAAAACTTTTTGGAAAAGTGGCGAACCAAATAACTTAAA
CGGAAATGAAAATTGTCTTTTAACAAATGATGGTGCGTGGAATGATGAGG
ACTGTTCAGTTACCAAGTACTACGTGTGCAAACTTGATTCTGGTGAGTTT
CTCATCATTTGTTGTTTGGTATTAATAAATTAGTTCATTATCCAGCGCGT
GTTTAAATAGCGTAAAATGATAAAAAATGGGTATTGCTCCACAACAGAAT
TTAAAATAATTCCCGCCCAACAACATTTAATTTGCTTTCCTGTCCAATAT
TTTCTGATTAATAGCTTCTGTAGAGGCTATATATTTCCAATACTGTATTG
ATGTCACATAAAGAAATGGAACATTTGAACATTCTACTCTTTTCCTTTGA
TTAATTGTTAATTTTATTTAATGACTTAAGTGATTAAATAGTTCACAAAT
CCCCCCCCTTTTATCAACTATCTTTAATAACAACAAAATGAAAATGACAG
TTTTCAAATTCAGAAAGCAAAATTTGAAAAATAAATTCTGCAGTGGTATA
ACAGTGGTTGTATATCATAAGGAAAATTATTCAATGCTATTTTTGCCTAC
GGGCATATAATAATTAATTGAAATATGCTTGAAAATGAGAATGATTATTT
AGTGATGAACGAATAATACACCAATTATATTGACGCAGTCTCAGCCAACA
TGAAAATTATTGGGCTGTGACGAGAACATATATTTTTGTATATCGGATTC
AACTTTTTCCAATAACTGATATGCTAACTTATATTAGGAAACTAATTCTT
GGTTATAACAACAATTGCTTTTTAATTCTGTATTTTTTATTTGCTCTTTC
AACAGAATTTACTCTGCGATTCCTCACAAAGCCATCAGTTAGAAAAAGTG
AGAGTGGCAACGAGGTAATCATTTCTGGTTGCAGTTATTCTTCGTCAACT
CATTCCAGTTGGATGGCAAAATCTTTTATTCAAAGAAACAATGATGACTT
GATTGCAATTTTCAATGCAACCCAAGTTACTGATGAAACAAAAGATGAAA
ATGTTTTCACTCTACCTTCTGTCAAATTGTCCAATGTTGAGGGTGGTGAT
TTCAGTTGTGTGGTTGTTATTGACAACATGACGTTTTTTTCAAATACAAC
AAAATTCATTCCTGGTAAGTAAATTTACCATTTTAATGATGCTGATCCTT
AGTTCAGCTATTTTACATTGCAGTCAATACACACCAGATACACACCATGC
TTTCCATCAGAATTTTTATCACTTTGCACACAGACCAAGTGACAAGTAAA
GGTTTTATTATTGTAACCTGAGTTCTTTTTTGTGATTTTTTAGAGAACCA
AGTCACAAGTTTCAATGAAGCTCAATATTACTTTAGCATTTCCAAGAAGA
ATTGGCAGTCTGCAGAAAATGATTGTATTTACCTTGGAGGTCACCTAACA
AGTGTCCACTCTCAGGCTGAAAATGAGTTTATTAACCAAGAAATCAAGAG
GTTTGTATCATCAAGTTTCATTTCATGGTGAAATTTGCTTAAATACATAT
TGACTAGATTATAGTCCTTCTATAATGATATTACCCTCTGAGAAGTCACC
GGGTTCTTTGGAAAACTAACAATTTTACTTTTACTTTATTATCAATTCAG
AGTTTTTGGGACAGCCAGCCATATGAATAAGATTTAAATTTTAAATTTTT
TGATTATACTAAAGATTTTTTATTTACTATTCTCTGATAGGACAACAGGG
AATGTTATTGTTTGGTACGGTGGTGAAAGAAAAAACAATGTTTTTGTTTG
GACTGATGGTACAATTTTTACCAAAACTTTCTGGAATACTGGTGAACCAA
ATAACTTGGGTGGAAATGAAAATTGTCTTAACGTATATGCAACTGGAATG
TGGAATGACATCAGCTGTCATAACTTGTTTTATTACGTATGCAAACTTCG
CTCATCAGGTAAAAGAAATTATTGGGTGGGGGGGGTTCGGTAATTCTTCC
ATCAGCTCACTATAGCTAACTGTAATCTGATTACTCATCTGTTAAAGATA
TTCTATTATTCGAGCAATNGGGGGGGGGGGGGGGTTGATAACTCTTCCAT
CAGCTGACTATAGCTAACAGTAGTTTGATCGCTCATCTGTTAAAGATATT
CTATCATTCGAGCAATACTTTCTTTAGTGAGTTAATTTGCGTCCACAGTA
CAACCTTATTACATACTATTAACCCAAAACTAGGGGAGGTACCCGCCCTT
TCTCCCTAAATTACTCCGTTTAATTTTTCCTGATAGTTATTGTGTAGAGA
CATCAAATAAAAGTTTAGGTTCTTAGAAACATCCTTGGACAATTTAGATG
AATCAAATTCAAATTAATCACCTTTACGCTACCTCCAAGTCTGGGCCGTG
ATAACATTTCCACTTGGAAACATTTTCGATCTTCTTTTAAAAACCCACAA
TTTATGTTATTTAATTTGTATTTTTGAAATTCTTATATAGATTTTACATT
GCAATTCCTCACAAAGCCATCATTAAGAAGAAGTGAGAGCAGAAAAGAAA
CAATTGTTTCTGGCTGCAGTTATTCTTCGTCAACTCACTCCAGTTGGATG
GCAAAATCTTTTATTCAAAGAAATAATGATGACTTGATTGCGATTTCTAC
TGCAGTGCAAGTTACTAATGAAACAAGTCGTGACAATGTTTTCACTCTAC
CTTCTGTTAAATTGTCGTATATTGAACATGGAGATTTCAGATGCGTGATA
ATCCATGACAGTATAACGTATTACTCTTTTGCATCCAAATTGTATAAATC
TCCAGGTATATATTTCTTTTTCAGCTAATAATCACACAAATGTTATTACT
TTAGTAGTAGTAAGTCTGCGGCCCGAAGGCTTGTCTTTCAATAGCTATCT
ACCCGAAGGTAGGAGAGGGCGCCATTCTCTCCCTGGATTGCTCCACTTAC
CCTTAATCCTTCTCTTAATTGCTAAGCATCAAGCAGAGAGACATCAAGTA
CCATTTCGGGAATCTTTGGTATGACCCGGCTGGAAATTTACCTCCACAAC
CTTGCGAAAACTAGCCGGATGCTCTACCACTGCACTACGATTGCTTTACC
CTACGGTAGTTACTTTAAGGCGCCTGATAAGTGCATTCCTGTTGTCAGTT
TTTTTCATTTTGCTTCCAGCTCTCGTTCATTGCACCCTCTGTTTATGAAG
ACACATTAGAGTAATTGTTTCAAATGAAAATTGTCAGAAATTAACCACCT
TTCAAGTTTACCGTGAGTGGAAATTCATGTAACTAATCAAATTATTGTTC
AACGTTTCAGATTTTATCGATGTTCCAACATTTGCGAGAGAATCACAACA
TTTGCTGTCTGGATGTAATTTCTTGTATCACGAGGCACCACAAACTGACA
ACGTTTTCTTCAATCTCTACAACGATGCAAAACAATTGACAAACAGAAGA
CGCACAACCTTCAAAAACTCCACAATTCCAAACCAGTATCATTTCAACCN
ATGCAAAACAATTGACAAACAGAAGACGCACAACCATCAAAAACTCCACA
ATTCCAAACCAGTATCATTTCAACCAAGTTACAGTTACCAATTATACAGA
TGTGGGAAATTACATTCGATGTCAAATTGATATCGAAACAAACACTACCA
TGTCCAATTTCTCAGATATCATCAATGTTCATTGTAAGTTTTCGGTAACA
TCTAAGTCAGAATATTATAATCTTACACTGTTATCTGGATTCCATGTATT
TTTAGATAAACATCCAGTATAATAATTTAATGTTTTTTTTCGACAAATGA
CCAGATCCTCCTTGGATAATTTTGTATTCTGCAGACCTTGATTTATATTT
GCTATTGTTATGTTTTTAGACCCATCAGTTATAGACCACCCTACATCAAA
TTCCACCATCTATTTTGTTGGTGATCCAATTCAAATTGGTGGTTGCGCAT
TTAAGTCCACGTTTCGTCAAGGTGTCCAAGGTTACTGGTTAAAAAATGGT
GCCGTGTACAATGAGAACGTAAACTTGGTGTACGAGTTAGCAACAGATGG
GCTGATAGTGTTGAAACTACCTGCCCTTATCATTGACGAGGCAATTGAGA
GTGCTAATTATTCTTGCCAACTTGATGCTATAGTTAATGGTGATGGTGAT
ATTAGAATCACTCGTTCAAACCCTGTTCAGGCACTTGTGTATGGTAAGTT
CATCTTTGATTTATAGTTGATTGTCCTCAAGTCTCTGTAACCTTATAAAC
TGCTCGAAGTACCAAAGTTCTGTACTGTTGCAATGTTTTTCGTTGTATGA
TCTTTAAAACTCTAAAATTAGTTCACATCGATACTTTGTCATAGATCCGT
ATGCTACTTTCAATGGAGTTCGATACTACTTTAGTATAACAAAAAAAGAC
TGGCAATCTGCAGAAAATGATTGTGTAGATCTTGGAGGACATTTAACAAG
TGTTCACTCGCAAGCTGAAAATGATTTCCTTCATCAGCAACTTCTGAACA
GGTTCGTAAGGTACCTAATTTAAGTTGGTTTGCTGGTCTGTTAATAAGGG
GGACATGACACATCTTTTTCACTGGATATTGACACTTGGTTTATTAAATT
GGGTTATCCCAAAAAATAAAATATAAAAATTGAACCCCCTCCCTCATATC
GAGGAAAATCCAGGGTTCCCTGAAATTTTCGGAAACTCCATTGAGTTTTT
AAAATAACTTAATTTATTCATCGTCATTACAAGAAGACGATAAATCAAGG
GACATTTAAAAATTTGTTATAAGACTTGTCCCAAAGGTGATCACCTCGAC
AAGGGGCAATCAATTTCTATTATGGCCCATCTTTTTATTAAACTGTACTT
AATTTATTAATTTTGAATCAAATTTCACAATTATTCTCTTAATATACAGA
ACAGGGAGTGGAGATGCTTGGTATGGTGGTCTTAGAAGTGAAAATGTTTT
TTTTCTTTGGTCAGATGGCTCAGGATTTCTCACAACATTTTGGAATCCTG
GAGAGCCCAATGACAGTGGAGGGGCTGAGGATTGTTTACAAGGTTGGGCT
GCTAATGATCATTGGAACGATGCATGGTGTGGAAAGAAATTTCATTTTGT
GTGCAAAATTTATTCAGGTTAGTTATCAGTTTACTAAGTTTTCCATTTTT
CGTTTATTTGTGACAGAGAAATTGACCCTTCCCTTCTCCGAAAGATTTCC
CTTGGAAAACTTTATTAGTCAAATTTGATCGACATTCACTATTCGTATTA
CAAATGCTTGAAAAATAACTCTTGAAAAACTTCTGCTTGAAAATCAAAGC
GAAGATCAACCCTAAAAAAGTACGGTAGTTGTCTTTGCCTTGGAGGGAGC
ACGAGCAAAGCTCTGTTTCGTTACAATAGATTTGGTACAATAGATTTCTT
ATTTTTACGCCTAAAATGGTCAATCAAGGAACGATTTCGGGGGTTTCGGG
GCTGAAGGGAAAATATCGGGGGGTATATTCTCCACACAGTTCGAATAAAC
TTAAAGTTACGGTTAGAGTTTCTCTGGGACATTTTTCCAAAGGCGAAGTG
CCAGGGGGTAGATTTCAAACTTCAATTCTAGTTTCACCTGGTTTCACTAG
TTTTGATACCAATTAATGTTTTAATATTTTAATGTGAAAATGATTTATGT
ATCAAATATTATTGTCAAATACATAATAATTTTATAATATTCCGGTTTGA
AGGATGCGATGAATAGCAGCAGCCTTTGTGTTCTTCTCCTATCTAGCTTT
TCTTTATTATTTTTCTAAATATTCTTAACTTCAGTTGAGCTAGAATCTGT
GAATGTCTGTGTGTGTGTCTGTCCAGGTCTGTATGTGTGTATGTTCCAAA
ACTTTGGGGCAACCTGAAGACTTCAAAAATTGTTCGATTTGGCTGAAATT
TTGCACACCTGTTTTTTGGGTGAATATTTGTTTTTTTTTTTCATTTTTTG
AAAACTTTGATTTTCAAGGCCTGGACTCTAATCTTTTGGTTTGTTTTGCT
ACAATCGGGCCTATGAATAATTTGAAGCATCTGAAGTTGAGTCCAGTGCG
TTGCGCACGTTCGACTATTTAATTATCATCTTGAACCTCTAAAAGTTAAA
CGACTCTTATTTCTGAATTGTGAAAACTTTGAAAGTTATTTTAACTGAAC
TCTCTTTTATTTTAGATTTTACACTGCAATTCCTCACAAAGCCATCATTA
AGAAGAAGTGAGAGCAGAAAAGAAACAATTGTTTCTGGCTGCAGTTATTC
TTCGTCAACTCACTCAAGTTGGACACCAAAATCTTTTATTCAAAGAAACA
ATGATGACTTGATTGCGATTTCTACTGCAGTACAAGTTACTAATGAAACA
AGTTATGACAATGTTTTCTCTCTACCCTCTGTTAAATTGCCGTATATTGA
AAATGGAGATTTCAGATGCGTGATTATTGTTGCGGACAAAACATTTTATT
CAAACAGCTCCAAGTTGTATAAATCTGCAGGTAATTTTATTTGGAAACTT
GAAAAAAATTTTTGCTTTGTTAGTTTCACTTTTTTTATGTCAAAGTTGAT
TTCACATTGCTTGGTCAGGGTCTTACTTAAGTCATTTGCCTGGCAAATGT
ATCAATCATCTATTCAATCGTTTTTGTTATACATGAAAGCTTCTGTCACC
ACTCCAAGACAATCAAATTAATAATATATTTTAACACTTTAGAATTTATC
AAAGTCCCAACATTTGAAAGCGGAACACAACATTTGCTGTCTGGATGTCA
TTTTTTGTATCACGAGGCACCACAAACTTATGACGTTTTCTTCAATCTCT
TCAACAATGCGAAACAATTAACCAAAAGAAGACGCACAACCATAAAAAAC
TCCACAATTCCAAACCAGTATCATTTCAACCAAGTTACAGTTACCAATTA
TACAGATGTGGGAAATTACATTCGATGTCAAATTGATATCGAAACAACCG
CTACCATGTCCAATTTCTCAGATATCATCAATGTTCATTGTAAGTGTAGC
TCAGTTTGAGAAGTTTGTTTGATTAGTAATACTAATTCCTATCTTTTTAA
TAGCATCTAAATTTATTATAAAATTGGCTCATGAAAAATGTAGAAATTCA
CGCGATTGACTTCAATGATCCTACCTTTGACAAATATTTAGTTCCACTTT
TTTAGTGATATTGCATCGACAAGTTATTTATTGCTGAATTTCGTATCTCG
GCATAATAACAGATTTTCAACATTTCAAAAAATCTCTTCCTTTAGACCCA
TCAGTTTTAAACCAACCGACATCAAACTTCACAAATTATTTCATTGGTGA
TCCAATTCAAGTTGGTGGTTGCGCATTTAAGTCCATGTTTCATCAAGGTG
TCCAAGGTTACTGGTTAAAAAATGGTGCCGTGTACACTGAAAACGTAACC
TTGGTGTACGAGATAGCAACAGATGGACTCCTAGTGTTGAAACTACTTGA
CCTTATCATTGACGAGGCATCTGAAAGTGCTAATTATTCTTGCCAACTTG
ATGTTATAGTCAACGGGGATGGTGGTATCAGAACTGCTCGCTCAAATATA
GTGCAAACAACTGTCTTCAGTAAGTCTATCGCTTTCATGGTTTTTTGTAA
TTTTAACATTTTTACGATGCATAGGCTAATCAATTTCAGCCTAACTTCTC
CAAATGTAATCAGATTCTTAATTCAATTAATCTCAGAACCCCTAAATTCT
TACATATTGGATAATCCTTGTGCCGAACATGCTTGTCAATGAATCTCCAG
TTGATTAATTCACTCTTAAAACATTTAGGTAACGGAGTACGATTCTTAAC
AAAACCTACAATCAAGAGAACATCGAAC

Coding sequence (CDS) from alignment at scaffold_47:289378..297955-

>TCONS_00067484 ID=TCONS_00067484|Name=TCONS_00067484|organism=Clytia hemisphaerica|type=CDS|length=1587bp|location=Sequence derived from alignment at scaffold_47:289378..297955- (Clytia hemisphaerica)
CTCACAAGTGTTCACTCACAGGCTGAAAACAATTTCCTAAAACAAGAATT
TCATAACAGGACTGGAAGGCGAATCGCTTGGTATGGTGGAGAGAAAAAGA
ATGGTGTATTTATCTGGTCTGATGGAACCAGTTTTACAAAAACTTTTTGG
AAAAGTGGCGAACCAAATAACTTAAACGGAAATGAAAATTGTCTTTTAAC
AAATGATGGTGCGTGGAATGATGAGGACTGTTCAGTTACCAAGTACTACG
TGTGCAAACTTGATTCTGAATTTACTCTGCGATTCCTCACAAAGCCATCA
GTTAGAAAAAGTGAGAGTGGCAACGAGGTAATCATTTCTGGTTGCAGTTA
TTCTTCGTCAACTCATTCCAGTTGGATGGCAAAATCTTTTATTCAAAGAA
ACAATGATGACTTGATTGCAATTTTCAATGCAACCCAAGTTACTGATGAA
ACAAAAGATGAAAATGTTTTCACTCTACCTTCTGTCAAATTGTCCAATGT
TGAGGGTGGTGATTTCAGTTGTGTGGTTGTTATTGACAACATGACGTTTT
TTTCAAATACAACAAAATTCATTCCTGAGAACCAAGTCACAAGTTTCAAT
GAAGCTCAATATTACTTTAGCATTTCCAAGAAGAATTGGCAGTCTGCAGA
AAATGATTGTATTTACCTTGGAGGTCACCTAACAAGTGTCCACTCTCAGG
CTGAAAATGAGTTTATTAACCAAGAAATCAAGAGGACAACAGGGAATGTT
ATTGTTTGGTACGGTGGTGAAAGAAAAAACAATGTTTTTGTTTGGACTGA
TGGTACAATTTTTACCAAAACTTTCTGGAATACTGGTGAACCAAATAACT
TGGGTGGAAATGAAAATTGTCTTAACGTATATGCAACTGGAATGTGGAAT
GACATCAGCTGTCATAACTTGTTTTATTACGTATGCAAACTTCGCTCATC
AGATTTTACATTGCAATTCCTCACAAAGCCATCATTAAGAAGAAGTGAGA
GCAGAAAAGAAACAATTGTTTCTGGCTGCAGTTATTCTTCGTCAACTCAC
TCCAGTTGGATGGCAAAATCTTTTATTCAAAGAAATAATGATGACTTGAT
TGCGATTTCTACTGCAGTGCAAGTTACTAATGAAACAAGTCGTGACAATG
TTTTCACTCTACCTTCTGTTAAATTGTCGTATATTGAACATGGAGATTTC
AGATGCGTGATAATCCATGACAGTATAACGTATTACTCTTTTGCATCCAA
ATTGTATAAATCTCCAGATTTTATCGATGTTCCAACATTTGCGAGAGAAT
CACAACATTTGCTGTCTGGATGTAATTTCTTGTATCACGAGGCACCACAA
ACTGACAACGTTTTCTTCAATCTCTACAACGATGCAAAACAATTGACAAA
CAGAAGACGCACAACCTTCAAAAACTCCACAATTCCAAACCAGTATCATT
TCAACCNATGCAAAACAATTGACAAACAGAAGACGCACAACCATCAAAAA
CTCCACAATTCCAAACCAGTATCATTTCAACCAAGTTACAGTTACCAATT
ATACAGATGTGGGAAATTACATTCGATGTCAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042146XLOC_042146Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067484-proteinTCONS_00067484-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067484-exon-scaffold_47-1575043694:297896..297955TCONS_00067484-exon-scaffold_47-1575043694:297896..297955Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:297064..297272TCONS_00067484-exon-scaffold_47-1575043694:297064..297272Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:296042..296350TCONS_00067484-exon-scaffold_47-1575043694:296042..296350Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:295706..295862TCONS_00067484-exon-scaffold_47-1575043694:295706..295862Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:295248..295465TCONS_00067484-exon-scaffold_47-1575043694:295248..295465Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:294401..294715TCONS_00067484-exon-scaffold_47-1575043694:294401..294715Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:293523..293895TCONS_00067484-exon-scaffold_47-1575043694:293523..293895Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:289637..289960TCONS_00067484-exon-scaffold_47-1575043694:289637..289960Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1575043694:289378..289427TCONS_00067484-exon-scaffold_47-1575043694:289378..289427Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:297896..297955TCONS_00067484-exon-scaffold_47-1510915933:297896..297955Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:297064..297272TCONS_00067484-exon-scaffold_47-1510915933:297064..297272Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:296042..296350TCONS_00067484-exon-scaffold_47-1510915933:296042..296350Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:295706..295862TCONS_00067484-exon-scaffold_47-1510915933:295706..295862Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:295248..295465TCONS_00067484-exon-scaffold_47-1510915933:295248..295465Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:294401..294715TCONS_00067484-exon-scaffold_47-1510915933:294401..294715Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:293523..293895TCONS_00067484-exon-scaffold_47-1510915933:293523..293895Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:289637..289960TCONS_00067484-exon-scaffold_47-1510915933:289637..289960Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1510915933:289378..289427TCONS_00067484-exon-scaffold_47-1510915933:289378..289427Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:297896..297955TCONS_00067484-exon-scaffold_47-1491911889:297896..297955Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:297064..297272TCONS_00067484-exon-scaffold_47-1491911889:297064..297272Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:296042..296350TCONS_00067484-exon-scaffold_47-1491911889:296042..296350Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:295706..295862TCONS_00067484-exon-scaffold_47-1491911889:295706..295862Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:295248..295465TCONS_00067484-exon-scaffold_47-1491911889:295248..295465Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:294401..294715TCONS_00067484-exon-scaffold_47-1491911889:294401..294715Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:293523..293895TCONS_00067484-exon-scaffold_47-1491911889:293523..293895Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:289637..289960TCONS_00067484-exon-scaffold_47-1491911889:289637..289960Clytia hemisphaericaexon
TCONS_00067484-exon-scaffold_47-1491911889:289378..289427TCONS_00067484-exon-scaffold_47-1491911889:289378..289427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:289378..297955 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0383127	0	0.108803	0	0	0	0	0	0.0205047	0	0	0	0.013568	0	0	0	0	0	0	0.362377	0.0356944	0	0.184297	0.254329	0.334546	0.188554	0.138922	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
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BLAST of TCONS_00067484 vs. Swiss-Prot (Human)
Match: CLC4K (C-type lectin domain family 4 member K OS=Homo sapiens GN=CD207 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.196e-20
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  611 YYFSISKKNWQSAENDCIYLGGHLTSVHSQAENEFINQEIKRTTGNVIVWYGGERKN--NVFVWTDGTIFTKT----FWNTGEPNNLGGNENCLNVYATGM--WNDISCHNLFYYVCK 940
            YYFS+  K W SAE  C+    HLTSV S++E EF+     +T G +I W G  +      + W D T F K     FW  GEPNN G NE+C N+ A  +  WND  C   F ++CK
Sbjct:  207 YYFSLIPKTWYSAEQFCVSRNSHLTSVTSESEQEFLY----KTAGGLIYWIGLTKAGMEGDWSWVDDTPFNKVQSVRFWIPGEPNNAGNNEHCGNIKAPSLQAWNDAPCDKTFLFICK 320
The following BLAST results are available for this feature:
BLAST of TCONS_00067484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLC4K9.196e-2041.53C-type lectin domain family 4 member K OS=Homo sap... [more]
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