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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067512 ID=TCONS_00067512|Name=TCONS_00067512|organism=Clytia hemisphaerica|type=transcript|length=2931bpRun BLAST on NCBI protein sequence of TCONS_00067512-protein >TCONS_00067512-protein ID=TCONS_00067512-protein|Name=TCONS_00067512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=922bp LYSMLPRESDSKECSASLLSIISYPAFAVEDTTIIDATKSEILGKLEGSYRun BLAST on NCBI transcript from alignment at scaffold_47:476012..507164- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067512 ID=TCONS_00067512|Name=TCONS_00067512|organism=Clytia hemisphaerica|type=transcript|length=31153bp|location=Sequence derived from alignment at scaffold_47:476012..507164- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:476012..507164- >TCONS_00067512 ID=TCONS_00067512|Name=TCONS_00067512|organism=Clytia hemisphaerica|type=CDS|length=2769bp|location=Sequence derived from alignment at scaffold_47:476012..507164- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067512 vs. Swiss-Prot (Human)
Match: KPB1 (Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform OS=Homo sapiens GN=PHKA1 PE=1 SV=2) HSP 1 Score: 395.971 bits (1016), Expect = 8.350e-119 Identity = 184/379 (48.55%), Postives = 268/379 (70.71%), Query Frame = 2
Query: 2 LYSMLPRESDSKECSASLLSIISYPAFAVEDTTIIDATKSEILGKLEGSYGCKRFLRDGHHCMNEDRHRLHYELHELSKFEKIECEWPLFFCYLLLDGIYNKNEAQVEKYSRLLERLLIQTEDGVYLLPELFYVPLEKLDAEREEPRSQQRLCGDHVPHLWTQSLFILGLLLKDGFVAAGELDPLNRRYVTAPKPELVVQVALIAEDEEIKDLLAEKGIESQTVEEVSPIRILPAKCLVRLYNNLGQNAKLGLSGRPNSSLGIFGIGSLYRSDGHLLAFTPQFLDYRQFYLCLDNELVIDSFKTEIEYLRSNWKQLGRPTLTLPITHALLE---GSLDSTAGKFLLQVNSGYLYSVRIRVGKLSEMQTRSSIKNIDFVD 1129
L S+LPR S SKE ASLLS++S+PAFAVED+ +++ TK EI+ KL+G YGC RFLRDG+ ED +RL+YE EL FE IECEWPLF+ Y +LDG+++ N QV++Y LE +LI+ ++GV LLPEL+ VP +++D E + P + R+ +PH+W QSL+ILG L+ +GF+A GE+DPLNRR+ T PKP++VVQV+++AE EEIK +L +KGI +T+ EV PIR+ PA+ L +Y++LG N ++ LSGRP +G+ G LY + FTPQF+D +QFYL LDN+++++ +T++ YL S W+ G+PT+T PI+H++L+ SL+S+ L ++ GY R++ GKLSE T S ++ F+D
Sbjct: 242 LNSLLPRASTSKEVDASLLSVVSFPAFAVEDSQLVELTKQEIITKLQGRYGCCRFLRDGYKTPKEDPNRLYYEPAELKLFENIECEWPLFWTYFILDGVFSGNAEQVQEYKEALEAVLIKGKNGVPLLPELYSVPPDRVDEEYQNPHTVDRVPMGKLPHMWGQSLYILGSLMAEGFLAPGEIDPLNRRFSTVPKPDVVVQVSILAETEEIKTILKDKGIYVETIAEVYPIRVQPARILSHIYSSLGCNNRMKLSGRPYRHMGVLGTSKLYDIRKTIFTFTPQFIDQQQFYLALDNKMIVEMLRTDLSYLCSRWRMTGQPTITFPISHSMLDEDGTSLNSSILAALRKMQDGYFGGARVQTGKLSEFLTTSCCTHLSFMD 620 HSP 2 Score: 322.398 bits (825), Expect = 8.529e-93 Identity = 192/463 (41.47%), Postives = 274/463 (59.18%), Query Frame = 2
Query: 1448 QLENSTDINEQADILQFLYKTRGYHFDVALNGNPGCTVEKLLRELYEKACHLKSWGLIRHISGMLRKQVEYLGPNCTELLVHQKQIGVGLPHLQREEIIDQPLPPRALKKLIYSSCGCDSSSAVLTQEILTYLAMFVKTHPALFDGMLQIRIGLIMEVMAAEYARTTGLTGEEAADQLMSLTPFQMKSLLYYILTGKEFGVK-----MDLNKSVVIDTGE--------SSHSGLAMFRTAVKRIS-QILRMKKKEVGGG--------------DNENMHPRKIGQWLRRRCLDGALNRVPSNFYVKIWHVLTRCHGLSVDGNFFLEHRLTQENTSGEMKFALRVENELNKIVYPEYRQLVVEVLMVLYVFMERDIHLNVDKMIPLDTFVSKANKLFLNEQREGFGDATLCCASREETNMTRPCNASNNICRYFYDSAPSGTYGTMTYFTKVVLQYLYKDREHS 2752
QL+ ++ + EQADIL LY +G ++ L TV +LL ELY K ++ WGLIR+ISG+LRK+VE L CT+LL HQK + VGLP RE+ I PLP AL +LI + D S ++LTQEI+ YLAM+++T P LF M ++RIGLI++VMA E A + + EEA + LM+L+P MK+LL++IL+GKEFGV+ D N S I E + +G+ ++ +K++ + L + + G D ++ + GQW RRR LDGALNRVP FY K+W VL +CHGLSV+G F L T+E T GE+KF++ VE+ LN++ PEYRQL+VE ++VL + + +IH ++ +I ++ V AN LFL EQ+ D T+ + ++ IC YDSAPSG +GTMTY +K Y+ + HS
Sbjct: 769 QLKETSSLQEQADILYMLYTMKGPDWNTELYNERSATVRELLTELYGKVGEIRHWGLIRYISGILRKKVEALDEACTDLLSHQKHLTVGLPPEPREKTISAPLPYEALTQLIDEASEGDMSISILTQEIMVYLAMYMRTQPGLFAEMFRLRIGLIIQVMATELAHSLRCSAEEATEGLMNLSPSAMKNLLHHILSGKEFGVERSVRPTDSNVSPAISIHEIGAVGATKTERTGIMQLKSEIKQVEFRRLSISAESQSPGTSMTPSSGSFPSAYDQQSSKDSRQGQWQRRRRLDGALNRVPVGFYQKVWKVLQKCHGLSVEG-FVLPSSTTREMTPGEIKFSVHVESVLNRVPQPEYRQLLVEAILVLTMLADIEIH-SIGSIIAVEKIVHIANDLFLQEQKTLGADDTMLAK-----------DPASGICTLLYDSAPSGRFGTMTYLSKAAATYVQEFLPHS 1218 The following BLAST results are available for this feature:
BLAST of TCONS_00067512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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