|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067538 ID=TCONS_00067538|Name=TCONS_00067538|organism=Clytia hemisphaerica|type=transcript|length=1583bp
NNCACCAAATTCTAGATGGGAGGATGAAAGTTTACGATCAGACCCAGAAT
TATGGTCACTTTTAACTGATAAGAATGCTCAACCTCAGGAAGATGAAAGC
GATAGTGATGATAACATTGAAGGAAATGATCACAATCTTGAAAGACAAAT
GAAAAATAGTAACTCCTCTCAACCAACTTTGTTATATGATATTGATGGTG
CAACGATTTCTTCAGATAACGCTATCGATATTGCTCACCAACAATCTACT
ACTGACATAACATCTGATCAAGTCGTCAATATTGCTCCctgtgaaaatga
aataccaGTATCATTTTATTCGGAACCTGATTGGGAAGCTCTTGCATATC
CAGCCCACTATCCTgatgcaaaaaattattttaattctCCGAGAGATAAG
AACATAACCCTATCAAAATATATTCATACTCGATTGAAATCCTCAGATGA
TCGATTCGCTTCAGATCCACAATATATTTTTAGTTCGTTGAATTGGATTG
AAAGCTCTAATGTTGCTAGTGCAATTAGTTTCTCACAACAAAAGCATTTT
CAAAGTGATATATCAGCAGGTAGATTAATGAACCCTAATAATGTTAGGCA
AATGATATCGgatgatcaaatttttcaaaattctttcaaaaatataagAG
GAACTCCACAGTGGTGTCATAATATGATGCTAGATGTTTTAGCAAAATGT
CGAGTTTACGGACCAAGCACATATTTTCTTACGTGGACTGCAGCGTTATT
CAAATGGACTAATATTATCAAAGTAGTTGCTACACAATACGGAGAAAATC
TAAGTGATGAAGATGTGAATAGGATGGACTggagtcaaaaaattcaatat
tttaaaagaaaccCCGTGACAGTTGCCAGACAAATTGACCATGTTTTTAA
TAAGGTTTTCCCGAAAATGCTCATGAATGGTATGCATCCAATAGGACAAA
TTTTAAACTATGATGATCGCAGAGAATTCCAACACCGATCAGGTCTAGAA
CATGTTCATGCTCAAATTCATATTAAAGATGCCCCTGTAATTGACGAAAA
TGACAGTAGCAAAGACAATCAAGTTATTGATTTTATCGACAGATACATTA
CATGCTCATTACCAGACAAAGAGGAATATCCAAAACTTTACGAATTGGTA
AATACTGTACAAAAACATCATCATACAACAACCTGTAGAAAGAAAAGTGG
ATCGAGATGTAGATTTAAAGCTCCATGGCCACCATGTGAAGAAACCCAAA
TCATTCGAGGAAAACAAATCGACAAAAACGATTATAAAGCAAGTAAAAAA
ATCTTAGATAAAGTTCTAGATGAAATAAATAATTGCAATAGTGACCTGCA
AGATGTTACCCTTGATGATTTGTTGCAATCATGTGATCTTTCAAGAGAGG
AATATTTCACTGCTTTAAACATGGTTCAAAAGAAACTAACAGTGCTCTAT
AAAAGAAGTCCAAATGAAACTAATATCGATCCATACAATACTGTAATGAT
TAGTATCTTACAATCCAACATGAATATTCAGTATGTGACAAACATGTATG
CAGTGTTAGCTTATATTACTTCTTACATGTGCA Run BLAST on NCBI protein sequence of TCONS_00067538-protein >TCONS_00067538-protein ID=TCONS_00067538-protein|Name=TCONS_00067538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
XPNSRWEDESLRSDPELWSLLTDKNAQPQEDESDSDDNIEGNDHNLERQM
KNSNSSQPTLLYDIDGATISSDNAIDIAHQQSTTDITSDQVVNIAPCENE
IPVSFYSEPDWEALAYPAHYPDAKNYFNSPRDKNITLSKYIHTRLKSSDD
RFASDPQYIFSSLNWIESSNVASAISFSQQKHFQSDISAGRLMNPNNVRQ
MISDDQIFQNSFKNIRGTPQWCHNMMLDVLAKCRVYGPSTYFLTWTAALF
KWTNIIKVVATQYGENLSDEDVNRMDWSQKIQYFKRNPVTVARQIDHVFN
KVFPKMLMNGMHPIGQILNYDDRREFQHRSGLEHVHAQIHIKDAPVIDEN
DSSKDNQVIDFIDRYITCSLPDKEEYPKLYELVNTVQKHHHTTTCRKKSG
SRCRFKAPWPPCEETQIIRGKQIDKNDYKASKKILDKVLDEINNCNSDLQ
DVTLDDLLQSCDLSREEYFTALNMVQKKLTVLYKRSPNETNIDPYNTVMI
SILQSNMNIQYVTNMYAVLAYITSYMC Run BLAST on NCBI transcript from alignment at scaffold_470:8..1590 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067538 ID=TCONS_00067538|Name=TCONS_00067538|organism=Clytia hemisphaerica|type=transcript|length=1583bp|location=Sequence derived from alignment at scaffold_470:8..1590 (Clytia hemisphaerica)
TGCACATGTAAGAAGTAATATAAGCTAACACTGCATACATGTTTGTCACA
TACTGAATATTCATGTTGGATTGTAAGATACTAATCATTACAGTATTGTA
TGGATCGATATTAGTTTCATTTGGACTTCTTTTATAGAGCACTGTTAGTT
TCTTTTGAACCATGTTTAAAGCAGTGAAATATTCCTCTCTTGAAAGATCA
CATGATTGCAACAAATCATCAAGGGTAACATCTTGCAGGTCACTATTGCA
ATTATTTATTTCATCTAGAACTTTATCTAAGATTTTTTTACTTGCTTTAT
AATCGTTTTTGTCGATTTGTTTTCCTCGAATGATTTGGGTTTCTTCACAT
GGTGGCCATGGAGCTTTAAATCTACATCTCGATCCACTTTTCTTTCTACA
GGTTGTTGTATGATGATGTTTTTGTACAGTATTTACCAATTCGTAAAGTT
TTGGATATTCCTCTTTGTCTGGTAATGAGCATGTAATGTATCTGTCGATA
AAATCAATAACTTGATTGTCTTTGCTACTGTCATTTTCGTCAATTACAGG
GGCATCTTTAATATGAATTTGAGCATGAACATGTTCTAGACCTGATCGGT
GTTGGAATTCTCTGCGATCATCATAGTTTAAAATTTGTCCTATTGGATGC
ATACCATTCATGAGCATTTTCGGGAAAACCTTATTAAAAACATGGTCAAT
TTGTCTGGCAACTGTCACGGggtttcttttaaaatattgaattttttgac
tccAGTCCATCCTATTCACATCTTCATCACTTAGATTTTCTCCGTATTGT
GTAGCAACTACTTTGATAATATTAGTCCATTTGAATAACGCTGCAGTCCA
CGTAAGAAAATATGTGCTTGGTCCGTAAACTCGACATTTTGCTAAAACAT
CTAGCATCATATTATGACACCACTGTGGAGTTCCTcttatatttttgaaa
gaattttgaaaaatttgatcatcCGATATCATTTGCCTAACATTATTAGG
GTTCATTAATCTACCTGCTGATATATCACTTTGAAAATGCTTTTGTTGTG
AGAAACTAATTGCACTAGCAACATTAGAGCTTTCAATCCAATTCAACGAA
CTAAAAATATATTGTGGATCTGAAGCGAATCGATCATCTGAGGATTTCAA
TCGAGTATGAATATATTTTGATAGGGTTATGTTCTTATCTCTCGGagaat
taaaataattttttgcatcAGGATAGTGGGCTGGATATGCAAGAGCTTCC
CAATCAGGTTCCGAATAAAATGATACtggtatttcattttcacagGGAGC
AATATTGACGACTTGATCAGATGTTATGTCAGTAGTAGATTGTTGGTGAG
CAATATCGATAGCGTTATCTGAAGAAATCGTTGCACCATCAATATCATAT
AACAAAGTTGGTTGAGAGGAGTTACTATTTTTCATTTGTCTTTCAAGATT
GTGATCATTTCCTTCAATGTTATCATCACTATCGCTTTCATCTTCCTGAG
GTTGAGCATTCTTATCAGTTAAAAGTGACCATAATTCTGGGTCTGATCGT
AAACTTTCATCCTCCCATCTAGAATTTGGTGNN Coding sequence (CDS) from alignment at scaffold_470:8..1590 >TCONS_00067538 ID=TCONS_00067538|Name=TCONS_00067538|organism=Clytia hemisphaerica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_470:8..1590 (Clytia hemisphaerica)
GCACATGTAAGAAGTAATATAAGCTAACACTGCATACATGTTTGTCACAT
ACTGAATATTCATGTTGGATTGTAAGATACTAATCATTACAGTATTGTAT
GGATCGATATTAGTTTCATTTGGACTTCTTTTATAGAGCACTGTTAGTTT
CTTTTGAACCATGTTTAAAGCAGTGAAATATTCCTCTCTTGAAAGATCAC
ATGATTGCAACAAATCATCAAGGGTAACATCTTGCAGGTCACTATTGCAA
TTATTTATTTCATCTAGAACTTTATCTAAGATTTTTTTACTTGCTTTATA
ATCGTTTTTGTCGATTTGTTTTCCTCGAATGATTTGGGTTTCTTCACATG
GTGGCCATGGAGCTTTAAATCTACATCTCGATCCACTTTTCTTTCTACAG
GTTGTTGTATGATGATGTTTTTGTACAGTATTTACCAATTCGTAAAGTTT
TGGATATTCCTCTTTGTCTGGTAATGAGCATGTAATGTATCTGTCGATAA
AATCAATAACTTGATTGTCTTTGCTACTGTCATTTTCGTCAATTACAGGG
GCATCTTTAATATGAATTTGAGCATGAACATGTTCTAGACCTGATCGGTG
TTGGAATTCTCTGCGATCATCATAGTTTAAAATTTGTCCTATTGGATGCA
TACCATTCATGAGCATTTTCGGGAAAACCTTATTAAAAACATGGTCAATT
TGTCTGGCAACTGTCACGGggtttcttttaaaatattgaattttttgact
ccAGTCCATCCTATTCACATCTTCATCACTTAGATTTTCTCCGTATTGTG
TAGCAACTACTTTGATAATATTAGTCCATTTGAATAACGCTGCAGTCCAC
GTAAGAAAATATGTGCTTGGTCCGTAAACTCGACATTTTGCTAAAACATC
TAGCATCATATTATGACACCACTGTGGAGTTCCTcttatatttttgaaag
aattttgaaaaatttgatcatcCGATATCATTTGCCTAACATTATTAGGG
TTCATTAATCTACCTGCTGATATATCACTTTGAAAATGCTTTTGTTGTGA
GAAACTAATTGCACTAGCAACATTAGAGCTTTCAATCCAATTCAACGAAC
TAAAAATATATTGTGGATCTGAAGCGAATCGATCATCTGAGGATTTCAAT
CGAGTATGAATATATTTTGATAGGGTTATGTTCTTATCTCTCGGagaatt
aaaataattttttgcatcAGGATAGTGGGCTGGATATGCAAGAGCTTCCC
AATCAGGTTCCGAATAAAATGATACtggtatttcattttcacagGGAGCA
ATATTGACGACTTGATCAGATGTTATGTCAGTAGTAGATTGTTGGTGAGC
AATATCGATAGCGTTATCTGAAGAAATCGTTGCACCATCAATATCATATA
ACAAAGTTGGTTGAGAGGAGTTACTATTTTTCATTTGTCTTTCAAGATTG
TGATCATTTCCTTCAATGTTATCATCACTATCGCTTTCATCTTCCTGAGG
TTGAGCATTCTTATCAGTTAAAAGTGACCATAATTCTGGGTCTGATCGTA
AACTTTCATCCTCCCATCTAGAATTTGGTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067538-exon-scaffold_470-1491911889:8..1590 | TCONS_00067538-exon-scaffold_470-1491911889:8..1590 | Clytia hemisphaerica | exon |
| TCONS_00067538-exon-scaffold_470-1510915933:8..1590 | TCONS_00067538-exon-scaffold_470-1510915933:8..1590 | Clytia hemisphaerica | exon |
| TCONS_00067538-exon-scaffold_470-1575043694:8..1590 | TCONS_00067538-exon-scaffold_470-1575043694:8..1590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_470 | supercontig | scaffold_470:8..1590 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
|
